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PMC:1359074 / 41349-41502 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19738 152-153 -COLON- denotes :
T19737 146-152 NN denotes buffer
T19736 138-145 NN denotes binding
T19735 135-137 IN denotes in
T19734 128-134 NN denotes lysate
T19733 115-127 NN denotes reticulocyte
T19732 111-114 DT denotes the
T19731 106-110 IN denotes with
T19730 100-105 IN denotes along
T19729 95-99 NN denotes Sox6
T19728 78-94 JJ denotes vitro-translated
T19727 75-77 FW denotes in
T19726 72-74 IN denotes of
T19725 69-71 NN denotes μl
T19724 67-68 CD denotes 3
T19723 64-66 CC denotes or
T19722 58-63 NN denotes cells
T19721 54-57 NN denotes MEL
T19720 49-53 IN denotes from
T19719 40-48 NN denotes proteins
T19718 32-39 JJ denotes nuclear
T19717 29-31 IN denotes of
T19716 26-28 NN denotes μg
T19715 24-25 CD denotes 5
T19714 19-23 IN denotes with
T19713 9-18 VB denotes performed
T19712 5-8 VB denotes was
T19711 0-4 NN denotes EMSA
R13952 T19711 T19712 arg1Of EMSA,was
R13953 T19711 T19713 arg2Of EMSA,performed
R13954 T19713 T19712 arg2Of performed,was
R13955 T19713 T19714 arg1Of performed,with
R13956 T19713 T19738 arg1Of performed,:
R13957 T19716 T19715 arg1Of μg,5
R13958 T19716 T19717 arg1Of μg,of
R13959 T19716 T19723 arg1Of μg,or
R13960 T19719 T19717 arg2Of proteins,of
R13961 T19719 T19718 arg1Of proteins,nuclear
R13962 T19719 T19720 arg1Of proteins,from
R13963 T19722 T19720 arg2Of cells,from
R13964 T19722 T19721 arg1Of cells,MEL
R13965 T19723 T19714 arg2Of or,with
R13966 T19723 T19731 arg1Of or,with
R13967 T19725 T19723 arg2Of μl,or
R13968 T19725 T19724 arg1Of μl,3
R13969 T19725 T19726 arg1Of μl,of
R13970 T19728 T19727 arg1Of vitro-translated,in
R13971 T19729 T19726 arg2Of Sox6,of
R13972 T19729 T19728 arg1Of Sox6,vitro-translated
R13973 T19731 T19730 arg1Of with,along
R13974 T19734 T19731 arg2Of lysate,with
R13975 T19734 T19732 arg1Of lysate,the
R13976 T19734 T19733 arg1Of lysate,reticulocyte
R13977 T19734 T19735 arg1Of lysate,in
R13978 T19737 T19735 arg2Of buffer,in
R13979 T19737 T19736 arg1Of buffer,binding

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T19670 95-99 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19958 95-99 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T19662 84-94 http://purl.obolibrary.org/obo/GO_0006412 denotes translated

GO-MF

Id Subject Object Predicate Lexical cue
T19675 138-145 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T19678 58-63 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T19650 0-153 Sentence denotes EMSA was performed with 5 μg of nuclear proteins from MEL cells or 3 μl of in vitro-translated Sox6 along with the reticulocyte lysate in binding buffer:
T318 0-153 Sentence denotes EMSA was performed with 5 μg of nuclear proteins from MEL cells or 3 μl of in vitro-translated Sox6 along with the reticulocyte lysate in binding buffer:

simple1

Id Subject Object Predicate Lexical cue
T19689 95-99 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20312 95-99 Protein denotes Sox6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T19961 95-99 Protein denotes Sox6

DLUT931

Id Subject Object Predicate Lexical cue
T19978 138-145 Binding denotes binding
T19973 95-99 Protein denotes Sox6
R14198 T19973 T19978 themeOf Sox6,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T20305 75-99 Protein denotes in vitro-translated Sox6
T20300 115-127 Entity denotes reticulocyte
T20286 32-63 Protein denotes nuclear proteins from MEL cells

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20031 152-153 : denotes :
T20030 146-152 NN denotes buffer
T20029 138-145 JJ denotes binding
T20028 135-137 IN denotes in
T20027 128-134 NN denotes lysate
T20026 115-127 NN denotes reticulocyte
T20025 111-114 DT denotes the
T20024 106-110 IN denotes with
T20023 100-105 IN denotes along
T20022 95-99 NNS denotes Sox6
T20021 78-94 JJ denotes vitro-translated
T20020 75-77 IN denotes in
T20019 72-74 IN denotes of
T20018 69-71 NN denotes μl
T20017 67-68 CD denotes 3
T20016 64-66 CC denotes or
T20015 58-63 NNS denotes cells
T20014 54-57 NNP denotes MEL
T20013 49-53 IN denotes from
T20012 40-48 NNS denotes proteins
T20011 32-39 JJ denotes nuclear
T20010 29-31 IN denotes of
T20009 26-28 NN denotes μg
T20008 24-25 CD denotes 5
T20007 19-23 IN denotes with
T20006 9-18 VBN denotes performed
T20005 5-8 VBD denotes was
T20004 0-4 NNP denotes EMSA
R14218 T20004 T20006 nsubjpass EMSA,performed
R14219 T20005 T20006 auxpass was,performed
R14220 T20006 T20006 ROOT performed,performed
R14221 T20007 T20006 prep with,performed
R14222 T20008 T20009 nummod 5,μg
R14223 T20009 T20007 pobj μg,with
R14224 T20010 T20009 prep of,μg
R14225 T20011 T20012 amod nuclear,proteins
R14226 T20012 T20010 pobj proteins,of
R14227 T20013 T20009 prep from,μg
R14228 T20014 T20015 compound MEL,cells
R14229 T20015 T20013 pobj cells,from
R14230 T20016 T20015 cc or,cells
R14231 T20017 T20018 nummod 3,μl
R14232 T20018 T20015 conj μl,cells
R14233 T20019 T20018 prep of,μl
R14234 T20020 T20018 prep in,μl
R14235 T20021 T20022 amod vitro-translated,Sox6
R14236 T20022 T20020 pobj Sox6,in
R14237 T20023 T20009 prep along,μg
R14238 T20024 T20023 prep with,along
R14239 T20025 T20027 det the,lysate
R14240 T20026 T20027 compound reticulocyte,lysate
R14241 T20027 T20024 pobj lysate,with
R14242 T20028 T20027 prep in,lysate
R14243 T20029 T20030 amod binding,buffer
R14244 T20030 T20028 pobj buffer,in
R14245 T20031 T20009 punct :,μg

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T19684 95-99 Protein denotes Sox6

testone

Id Subject Object Predicate Lexical cue
T19631 95-99 Protein denotes Sox6

test3

Id Subject Object Predicate Lexical cue
T19643 95-99 Protein denotes Sox6
T19637 95-99 Protein denotes Sox6