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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19941 1283-1323 NN denotes 5′AATGCAGAACAAAGGGTCAGAtgagTGTCTGCGAAG3′
T19957 1409-1410 -RRB- denotes )
T19956 1402-1409 NN denotes MHB1650
T19955 1401-1402 -LRB- denotes (
T19954 1360-1400 NN denotes 5′AATGCAGtgccAAGGGTCAGAACATTGTCTGCGAAG3′
T19953 1358-1359 -COLON- denotes :
T19952 1357-1358 -RRB- denotes )
T19951 1355-1357 NN denotes M3
T19950 1354-1355 -LRB- denotes (
T19949 1352-1353 CD denotes 3
T19948 1346-1351 NN denotes probe
T19947 1339-1345 JJ denotes mutant
T19946 1335-1338 IN denotes for
T19945 1333-1334 -COLON- denotes ;
T19944 1332-1333 -RRB- denotes )
T19943 1325-1332 NN denotes MHB1648
T19942 1324-1325 -LRB- denotes (
T19940 1281-1282 -COLON- denotes :
T19939 1280-1281 -RRB- denotes )
T19938 1278-1280 NN denotes M2
T19937 1277-1278 -LRB- denotes (
T19936 1275-1276 CD denotes 2
T19935 1269-1274 NN denotes probe
T19934 1262-1268 JJ denotes mutant
T19933 1258-1261 IN denotes for
T19932 1256-1257 -COLON- denotes ;
T19931 1255-1256 -RRB- denotes )
T19930 1248-1255 NN denotes MHB1644
T19929 1247-1248 -LRB- denotes (
T19928 1213-1246 NN denotes 5′AACAAAGGGTCAGAACATTGTCTGCGAAG3′
T19927 1211-1212 -COLON- denotes :
T19926 1210-1211 -RRB- denotes )
T19925 1208-1210 NN denotes M1
T19924 1207-1208 -LRB- denotes (
T19923 1205-1206 CD denotes 1
T19922 1199-1204 NN denotes probe
T19921 1192-1198 JJ denotes mutant
T19920 1188-1191 IN denotes for
T19919 1186-1187 -COLON- denotes ;
T19918 1185-1186 -RRB- denotes )
T19917 1178-1185 NN denotes MHB1556
T19916 1177-1178 -LRB- denotes (
T19915 1136-1176 NN denotes 5′AATGCAGAACAAAGGGTCAGAACATTGTCTGCGAAG3′
T19914 1134-1135 -COLON- denotes :
T19913 1129-1134 NN denotes probe
T19912 1126-1128 NN denotes WT
T19911 1120-1125 JJ denotes 36-bp
T19910 1116-1119 DT denotes the
T19909 1112-1115 IN denotes For
T19908 1110-1111 -COLON- denotes :
T19907 1109-1110 -RRB- denotes )
T19906 1103-1109 VB denotes listed
T19905 1099-1102 VB denotes are
T19904 1092-1098 NN denotes oligos
T19903 1084-1091 JJ denotes forward
T19902 1079-1083 RB denotes only
T19901 1078-1079 -LRB- denotes (
T19900 1070-1077 NN denotes follows
T19899 1067-1069 IN denotes as
T19898 1063-1066 VB denotes are
T19897 1046-1062 NN denotes oligonucleotides
T19896 1042-1045 DT denotes the
T19895 1039-1041 IN denotes of
T19894 1029-1038 NN denotes sequences
T19893 1025-1028 NN denotes DNA
T19892 1021-1024 DT denotes The
T19891 1018-1019 -RRB- denotes )
T19890 1013-1018 JJ denotes above
T19889 1010-1012 IN denotes as
T19888 1000-1009 VB denotes described
T19887 999-1000 -LRB- denotes (
T19886 988-998 NN denotes antibodies
T19885 983-987 NN denotes Sox6
T19884 979-982 CC denotes and
T19883 977-978 -COMMA- denotes ,
T19882 975-977 NN denotes HA
T19881 973-974 -COMMA- denotes ,
T19880 968-973 NN denotes c-Myc
T19879 959-967 VB denotes included
T19878 950-958 NN denotes analyses
T19877 939-949 NN denotes supershift
T19876 935-938 IN denotes for
T19874 919-929 NN denotes Antibodies
T19873 902-917 NN denotes autoradiography
T19872 899-901 TO denotes to
T19871 893-898 RB denotes prior
T19870 887-892 VB denotes dried
T19869 882-886 VB denotes were
T19868 877-881 NN denotes gels
T19867 873-876 DT denotes the
T19866 869-872 CC denotes and
T19865 867-868 -COMMA- denotes ,
T19864 856-867 NN denotes temperature
T19863 851-855 NN denotes room
T19862 848-850 IN denotes at
T19861 846-847 NN denotes h
T19860 842-845 CD denotes 4–8
T19859 838-841 IN denotes for
T19858 833-837 NN denotes mAmp
T19857 830-832 CD denotes 19
T19856 821-829 JJ denotes constant
T19855 819-820 DT denotes a
T19854 816-818 IN denotes at
T19853 806-815 VB denotes performed
T19852 802-805 VB denotes was
T19851 786-801 NN denotes Electrophoresis
T19850 781-784 NN denotes gel
T19849 766-780 NN denotes polyacrylamide
T19848 764-765 -RRB- denotes )
T19847 761-764 NN denotes w/v
T19846 760-761 -LRB- denotes (
T19845 758-759 NN denotes %
T19844 757-758 CD denotes 6
T19843 754-756 CC denotes or
T19842 752-753 NN denotes %
T19841 751-752 CD denotes 4
T19840 749-750 DT denotes a
T19839 746-748 IN denotes on
T19838 739-745 VB denotes loaded
T19837 735-738 CC denotes and
T19836 723-734 NN denotes temperature
T19835 718-722 NN denotes room
T19834 715-717 IN denotes at
T19833 711-714 NN denotes min
T19832 708-710 CD denotes 60
T19831 705-707 CC denotes or
T19830 701-704 NN denotes min
T19829 698-700 CD denotes 30
T19828 694-697 IN denotes for
T19827 684-693 VB denotes incubated
T19826 679-683 VB denotes were
T19825 671-678 NN denotes samples
T19824 667-670 DT denotes the
T19823 665-666 -COMMA- denotes ,
T19822 660-665 NN denotes probe
T19821 647-659 VB denotes radiolabeled
T19820 643-646 DT denotes the
T19819 640-642 IN denotes of
T19818 631-639 NN denotes addition
T19817 621-630 VB denotes Following
T19816 614-619 NN denotes probe
T19815 601-613 VB denotes radiolabeled
T19814 598-600 IN denotes of
T19813 589-597 NN denotes addition
T19812 586-588 TO denotes to
T19811 580-585 JJ denotes prior
T19810 576-579 NN denotes min
T19809 573-575 CD denotes 60
T19808 570-572 TO denotes to
T19807 566-569 NN denotes min
T19806 563-565 CD denotes 30
T19805 557-562 VB denotes added
T19804 553-556 VB denotes was
T19803 551-552 -RRB- denotes )
T19802 549-551 NN denotes μl
T19801 547-548 CD denotes 3
T19800 546-547 -LRB- denotes (
T19799 537-545 NN denotes antibody
T19798 534-536 CC denotes or
T19797 532-533 -RRB- denotes )
T19796 526-532 NN denotes excess
T19795 520-525 JJ denotes molar
T19794 511-519 JJ denotes 200-fold
T19793 510-511 -LRB- denotes (
T19792 499-509 NN denotes competitor
T19791 483-498 NN denotes oligonucleotide
T19790 472-482 JJ denotes unlabelled
T19789 462-471 VB denotes indicated
T19788 458-461 DT denotes the
T19787 456-457 -COMMA- denotes ,
T19786 450-456 NN denotes assays
T19785 439-449 NN denotes supershift
T19784 436-438 CC denotes or
T19783 424-435 NN denotes competition
T19782 420-423 IN denotes For
T19781 413-418 NN denotes MgCl2
T19780 410-412 NN denotes mM
T19779 406-409 CD denotes 0.6
T19778 404-405 -COMMA- denotes ,
T19777 401-404 NN denotes DTT
T19776 398-400 NN denotes mM
T19775 393-397 CD denotes 0.25
T19705 88-89 -RRB- denotes ]
T19704 83-88 NN denotes γ-32P
T19703 82-83 -LRB- denotes [
T19702 77-81 IN denotes with
T19701 65-76 VB denotes end-labeled
T19700 61-64 CC denotes and
T19699 52-60 VB denotes annealed
T19698 47-51 VB denotes were
T19697 30-46 NN denotes oligonucleotides
T19696 16-29 JJ denotes complementary
T19695 0-15 JJ denotes Single-stranded
T19774 391-392 -COMMA- denotes ,
T19773 387-391 NN denotes EDTA
T19772 384-386 NN denotes mM
T19771 380-383 CD denotes 0.1
T19770 378-379 -COMMA- denotes ,
T19769 377-378 -RRB- denotes )
T19768 376-377 CD denotes 7
T19767 373-375 NN denotes pH
T19766 372-373 -LRB- denotes (
T19765 366-371 NN denotes HEPES
T19764 363-365 NN denotes mM
T19763 360-362 CD denotes 10
T19762 358-359 -COMMA- denotes ,
T19761 357-358 -RRB- denotes )
T19760 352-357 NN denotes dG-dC
T19759 351-352 -LRB- denotes (
T19758 346-350 NN denotes poly
T19757 343-345 CC denotes or
T19756 341-342 -RRB- denotes )
T19755 336-341 NN denotes dI-dC
T19754 335-336 -LRB- denotes (
T19753 330-334 NN denotes poly
T19752 324-329 NN denotes ng/μl
T19751 321-323 CD denotes 50
T19750 319-320 -COMMA- denotes ,
T19749 316-319 NN denotes BSA
T19748 310-315 NN denotes ng/μl
T19747 306-309 CD denotes 200
T19746 304-305 -COMMA- denotes ,
T19745 296-304 NN denotes glycerol
T19744 294-295 NN denotes %
T19743 292-294 CD denotes 10
T19742 290-291 -COMMA- denotes ,
T19741 286-290 NN denotes NaCl
T19740 283-285 NN denotes mM
T19739 279-282 CD denotes 100
T19738 277-278 -COLON- denotes :
T19737 271-277 NN denotes buffer
T19736 263-270 NN denotes binding
T19735 260-262 IN denotes in
T19734 253-259 NN denotes lysate
T19733 240-252 NN denotes reticulocyte
T19732 236-239 DT denotes the
T19731 231-235 IN denotes with
T19730 225-230 IN denotes along
T19729 220-224 NN denotes Sox6
T19728 203-219 JJ denotes vitro-translated
T19727 200-202 FW denotes in
T19726 197-199 IN denotes of
T19725 194-196 NN denotes μl
T19724 192-193 CD denotes 3
T19723 189-191 CC denotes or
T19722 183-188 NN denotes cells
T19721 179-182 NN denotes MEL
T19720 174-178 IN denotes from
T19719 165-173 NN denotes proteins
T19718 157-164 JJ denotes nuclear
T19717 154-156 IN denotes of
T19716 151-153 NN denotes μg
T19715 149-150 CD denotes 5
T19714 144-148 IN denotes with
T19713 134-143 VB denotes performed
T19712 130-133 VB denotes was
T19711 125-129 NN denotes EMSA
T19710 117-123 NN denotes kinase
T19709 102-116 NN denotes polynucleotide
T19708 99-101 NN denotes T4
T19707 94-98 IN denotes with
T19706 90-93 NN denotes ATP
T19875 930-934 VB denotes used
R13935 T19697 T19695 arg1Of oligonucleotides,Single-stranded
R13936 T19697 T19696 arg1Of oligonucleotides,complementary
R13937 T19697 T19698 arg1Of oligonucleotides,were
R13938 T19697 T19699 arg2Of oligonucleotides,annealed
R13939 T19697 T19701 arg2Of oligonucleotides,end-labeled
R13940 T19699 T19700 arg1Of annealed,and
R13941 T19700 T19698 arg2Of and,were
R13942 T19701 T19700 arg2Of end-labeled,and
R13943 T19701 T19702 arg1Of end-labeled,with
R13944 T19704 T19703 arg2Of γ-32P,[
R13945 T19705 T19703 arg3Of ],[
R13946 T19706 T19702 arg2Of ATP,with
R13947 T19706 T19703 arg1Of ATP,[
R13948 T19706 T19707 arg1Of ATP,with
R13949 T19710 T19707 arg2Of kinase,with
R13950 T19710 T19708 arg1Of kinase,T4
R13951 T19710 T19709 arg1Of kinase,polynucleotide
R13952 T19711 T19712 arg1Of EMSA,was
R13953 T19711 T19713 arg2Of EMSA,performed
R13954 T19713 T19712 arg2Of performed,was
R13955 T19713 T19714 arg1Of performed,with
R13956 T19713 T19738 arg1Of performed,:
R13957 T19716 T19715 arg1Of μg,5
R13958 T19716 T19717 arg1Of μg,of
R13959 T19716 T19723 arg1Of μg,or
R13960 T19719 T19717 arg2Of proteins,of
R13961 T19719 T19718 arg1Of proteins,nuclear
R13962 T19719 T19720 arg1Of proteins,from
R13963 T19722 T19720 arg2Of cells,from
R13964 T19722 T19721 arg1Of cells,MEL
R13965 T19723 T19714 arg2Of or,with
R13966 T19723 T19731 arg1Of or,with
R13967 T19725 T19723 arg2Of μl,or
R13968 T19725 T19724 arg1Of μl,3
R13969 T19725 T19726 arg1Of μl,of
R13970 T19728 T19727 arg1Of vitro-translated,in
R13971 T19729 T19726 arg2Of Sox6,of
R13972 T19729 T19728 arg1Of Sox6,vitro-translated
R13973 T19731 T19730 arg1Of with,along
R13974 T19734 T19731 arg2Of lysate,with
R13975 T19734 T19732 arg1Of lysate,the
R13976 T19734 T19733 arg1Of lysate,reticulocyte
R13977 T19734 T19735 arg1Of lysate,in
R13978 T19737 T19735 arg2Of buffer,in
R13979 T19737 T19736 arg1Of buffer,binding
R13980 T19739 T19740 arg1Of 100,mM
R13981 T19741 T19739 arg1Of NaCl,100
R13982 T19741 T19742 arg1Of NaCl,","
R13983 T19742 T19746 arg1Of ",",","
R13984 T19743 T19744 arg1Of 10,%
R13985 T19745 T19742 arg2Of glycerol,","
R13986 T19745 T19743 arg1Of glycerol,10
R13987 T19746 T19750 arg1Of ",",","
R13988 T19749 T19746 arg2Of BSA,","
R13989 T19749 T19747 arg1Of BSA,200
R13990 T19749 T19748 arg1Of BSA,ng/μl
R13991 T19750 T19757 arg1Of ",",or
R13992 T19753 T19750 arg2Of poly,","
R13993 T19753 T19751 arg1Of poly,50
R13994 T19753 T19752 arg1Of poly,ng/μl
R13995 T19753 T19754 arg1Of poly,(
R13996 T19755 T19754 arg2Of dI-dC,(
R13997 T19756 T19754 arg3Of ),(
R13998 T19757 T19770 arg1Of or,","
R13999 T19758 T19759 arg1Of poly,(
R14000 T19758 T19762 arg1Of poly,","
R14001 T19760 T19759 arg2Of dG-dC,(
R14002 T19761 T19759 arg3Of ),(
R14003 T19762 T19757 arg2Of ",",or
R14004 T19763 T19764 arg1Of 10,mM
R14005 T19765 T19762 arg2Of HEPES,","
R14006 T19765 T19763 arg1Of HEPES,10
R14007 T19765 T19766 arg1Of HEPES,(
R14008 T19767 T19766 arg2Of pH,(
R14009 T19767 T19768 arg1Of pH,7
R14010 T19769 T19766 arg3Of ),(
R14011 T19771 T19772 arg1Of 0.1,mM
R14012 T19773 T19770 arg2Of EDTA,","
R14013 T19773 T19771 arg1Of EDTA,0.1
R14014 T19773 T19774 arg1Of EDTA,","
R14015 T19773 T19778 arg1Of EDTA,","
R14016 T19775 T19776 arg1Of 0.25,mM
R14017 T19777 T19774 arg2Of DTT,","
R14018 T19777 T19775 arg1Of DTT,0.25
R14019 T19779 T19780 arg1Of 0.6,mM
R14020 T19781 T19778 arg2Of MgCl2,","
R14021 T19781 T19779 arg1Of MgCl2,0.6
R14022 T19783 T19784 arg1Of competition,or
R14023 T19784 T19782 arg2Of or,For
R14024 T19786 T19784 arg2Of assays,or
R14025 T19786 T19785 arg1Of assays,supershift
R14026 T19792 T19789 arg2Of competitor,indicated
R14027 T19792 T19790 arg1Of competitor,unlabelled
R14028 T19792 T19791 arg1Of competitor,oligonucleotide
R14029 T19792 T19793 arg1Of competitor,(
R14030 T19792 T19798 arg1Of competitor,or
R14031 T19796 T19793 arg2Of excess,(
R14032 T19796 T19794 arg1Of excess,200-fold
R14033 T19796 T19795 arg1Of excess,molar
R14034 T19797 T19793 arg3Of ),(
R14035 T19798 T19788 arg1Of or,the
R14036 T19798 T19804 arg1Of or,was
R14037 T19798 T19805 arg2Of or,added
R14038 T19799 T19798 arg2Of antibody,or
R14039 T19799 T19800 arg1Of antibody,(
R14040 T19802 T19800 arg2Of μl,(
R14041 T19802 T19801 arg1Of μl,3
R14042 T19803 T19800 arg3Of ),(
R14043 T19805 T19782 arg1Of added,For
R14044 T19805 T19787 arg1Of added,","
R14045 T19805 T19804 arg2Of added,was
R14046 T19806 T19808 arg1Of 30,to
R14047 T19808 T19807 arg1Of to,min
R14048 T19809 T19808 arg2Of 60,to
R14049 T19810 T19805 arg3Of min,added
R14050 T19810 T19806 arg1Of min,30
R14051 T19810 T19811 arg1Of min,prior
R14052 T19811 T19812 arg1Of prior,to
R14053 T19813 T19812 arg2Of addition,to
R14054 T19813 T19814 arg1Of addition,of
R14055 T19816 T19814 arg2Of probe,of
R14056 T19816 T19815 arg2Of probe,radiolabeled
R14057 T19818 T19817 arg2Of addition,Following
R14058 T19818 T19819 arg1Of addition,of
R14059 T19822 T19819 arg2Of probe,of
R14060 T19822 T19820 arg1Of probe,the
R14061 T19822 T19821 arg2Of probe,radiolabeled
R14062 T19825 T19824 arg1Of samples,the
R14063 T19825 T19826 arg1Of samples,were
R14064 T19825 T19827 arg2Of samples,incubated
R14065 T19825 T19838 arg2Of samples,loaded
R14066 T19827 T19828 arg1Of incubated,for
R14067 T19827 T19837 arg1Of incubated,and
R14068 T19830 T19829 arg1Of min,30
R14069 T19830 T19831 arg1Of min,or
R14070 T19831 T19828 arg2Of or,for
R14071 T19831 T19834 arg1Of or,at
R14072 T19833 T19831 arg2Of min,or
R14073 T19833 T19832 arg1Of min,60
R14074 T19836 T19834 arg2Of temperature,at
R14075 T19836 T19835 arg1Of temperature,room
R14076 T19837 T19817 arg1Of and,Following
R14077 T19837 T19823 arg1Of and,","
R14078 T19837 T19826 arg2Of and,were
R14079 T19838 T19837 arg2Of loaded,and
R14080 T19838 T19839 arg1Of loaded,on
R14081 T19842 T19843 arg1Of %,or
R14082 T19843 T19841 arg1Of or,4
R14083 T19844 T19843 arg2Of 6,or
R14084 T19845 T19839 arg2Of %,on
R14085 T19845 T19840 arg1Of %,a
R14086 T19845 T19842 arg1Of %,%
R14087 T19845 T19844 arg1Of %,6
R14088 T19847 T19846 arg2Of w/v,(
R14089 T19848 T19846 arg3Of ),(
R14090 T19850 T19838 arg3Of gel,loaded
R14091 T19850 T19846 arg1Of gel,(
R14092 T19850 T19849 arg1Of gel,polyacrylamide
R14093 T19851 T19852 arg1Of Electrophoresis,was
R14094 T19851 T19853 arg2Of Electrophoresis,performed
R14095 T19853 T19852 arg2Of performed,was
R14096 T19853 T19854 arg1Of performed,at
R14097 T19853 T19859 arg1Of performed,for
R14098 T19853 T19862 arg1Of performed,at
R14099 T19853 T19866 arg1Of performed,and
R14100 T19858 T19854 arg2Of mAmp,at
R14101 T19858 T19855 arg1Of mAmp,a
R14102 T19858 T19856 arg1Of mAmp,constant
R14103 T19858 T19857 arg1Of mAmp,19
R14104 T19861 T19859 arg2Of h,for
R14105 T19861 T19860 arg1Of h,4–8
R14106 T19864 T19862 arg2Of temperature,at
R14107 T19864 T19863 arg1Of temperature,room
R14108 T19866 T19865 arg1Of and,","
R14109 T19868 T19867 arg1Of gels,the
R14110 T19868 T19869 arg1Of gels,were
R14111 T19868 T19870 arg2Of gels,dried
R14112 T19870 T19866 arg2Of dried,and
R14113 T19870 T19869 arg2Of dried,were
R14114 T19870 T19871 arg1Of dried,prior
R14115 T19871 T19872 arg1Of prior,to
R14116 T19873 T19872 arg2Of autoradiography,to
R14117 T19874 T19875 arg2Of Antibodies,used
R14118 T19874 T19879 arg1Of Antibodies,included
R14119 T19875 T19876 arg1Of used,for
R14120 T19878 T19876 arg2Of analyses,for
R14121 T19878 T19877 arg1Of analyses,supershift
R14122 T19880 T19881 arg1Of c-Myc,","
R14123 T19881 T19884 arg1Of ",",and
R14124 T19882 T19881 arg2Of HA,","
R14125 T19884 T19883 arg1Of and,","
R14126 T19885 T19884 arg2Of Sox6,and
R14127 T19886 T19879 arg2Of antibodies,included
R14128 T19886 T19880 arg1Of antibodies,c-Myc
R14129 T19886 T19882 arg1Of antibodies,HA
R14130 T19886 T19885 arg1Of antibodies,Sox6
R14131 T19886 T19887 arg1Of antibodies,(
R14132 T19888 T19887 arg2Of described,(
R14133 T19888 T19889 arg1Of described,as
R14134 T19890 T19889 arg2Of above,as
R14135 T19891 T19887 arg3Of ),(
R14136 T19894 T19892 arg1Of sequences,The
R14137 T19894 T19893 arg1Of sequences,DNA
R14138 T19894 T19895 arg1Of sequences,of
R14139 T19894 T19898 arg1Of sequences,are
R14140 T19894 T19899 arg1Of sequences,as
R14141 T19897 T19895 arg2Of oligonucleotides,of
R14142 T19897 T19896 arg1Of oligonucleotides,the
R14143 T19898 T19901 arg1Of are,(
R14144 T19898 T19908 arg1Of are,:
R14145 T19899 T19898 arg2Of as,are
R14146 T19900 T19899 arg2Of follows,as
R14147 T19904 T19902 arg1Of oligos,only
R14148 T19904 T19903 arg1Of oligos,forward
R14149 T19904 T19905 arg1Of oligos,are
R14150 T19904 T19906 arg2Of oligos,listed
R14151 T19906 T19901 arg2Of listed,(
R14152 T19906 T19905 arg2Of listed,are
R14153 T19907 T19901 arg3Of ),(
R14154 T19913 T19909 arg2Of probe,For
R14155 T19913 T19910 arg1Of probe,the
R14156 T19913 T19911 arg1Of probe,36-bp
R14157 T19913 T19912 arg1Of probe,WT
R14158 T19913 T19914 arg1Of probe,:
R14159 T19915 T19916 arg1Of 5′AATGCAGAACAAAGGGTCAGAACATTGTCTGCGAAG3′,(
R14160 T19915 T19919 arg1Of 5′AATGCAGAACAAAGGGTCAGAACATTGTCTGCGAAG3′,;
R14161 T19915 T19920 arg1Of 5′AATGCAGAACAAAGGGTCAGAACATTGTCTGCGAAG3′,for
R14162 T19915 T19927 arg1Of 5′AATGCAGAACAAAGGGTCAGAACATTGTCTGCGAAG3′,:
R14163 T19917 T19916 arg2Of MHB1556,(
R14164 T19918 T19916 arg3Of ),(
R14165 T19922 T19920 arg2Of probe,for
R14166 T19922 T19921 arg1Of probe,mutant
R14167 T19922 T19923 arg1Of probe,1
R14168 T19922 T19924 arg1Of probe,(
R14169 T19925 T19924 arg2Of M1,(
R14170 T19926 T19924 arg3Of ),(
R14171 T19928 T19929 arg1Of 5′AACAAAGGGTCAGAACATTGTCTGCGAAG3′,(
R14172 T19928 T19932 arg1Of 5′AACAAAGGGTCAGAACATTGTCTGCGAAG3′,;
R14173 T19928 T19933 arg1Of 5′AACAAAGGGTCAGAACATTGTCTGCGAAG3′,for
R14174 T19928 T19940 arg1Of 5′AACAAAGGGTCAGAACATTGTCTGCGAAG3′,:
R14175 T19930 T19929 arg2Of MHB1644,(
R14176 T19931 T19929 arg3Of ),(
R14177 T19935 T19933 arg2Of probe,for
R14178 T19935 T19934 arg1Of probe,mutant
R14179 T19935 T19936 arg1Of probe,2
R14180 T19935 T19937 arg1Of probe,(
R14181 T19938 T19937 arg2Of M2,(
R14182 T19939 T19937 arg3Of ),(
R14183 T19941 T19942 arg1Of 5′AATGCAGAACAAAGGGTCAGAtgagTGTCTGCGAAG3′,(
R14184 T19941 T19945 arg1Of 5′AATGCAGAACAAAGGGTCAGAtgagTGTCTGCGAAG3′,;
R14185 T19941 T19946 arg1Of 5′AATGCAGAACAAAGGGTCAGAtgagTGTCTGCGAAG3′,for
R14186 T19941 T19953 arg1Of 5′AATGCAGAACAAAGGGTCAGAtgagTGTCTGCGAAG3′,:
R14187 T19943 T19942 arg2Of MHB1648,(
R14188 T19944 T19942 arg3Of ),(
R14189 T19948 T19946 arg2Of probe,for
R14190 T19948 T19947 arg1Of probe,mutant
R14191 T19948 T19949 arg1Of probe,3
R14192 T19948 T19950 arg1Of probe,(
R14193 T19951 T19950 arg2Of M3,(
R14194 T19952 T19950 arg3Of ),(
R14195 T19954 T19955 arg1Of 5′AATGCAGtgccAAGGGTCAGAACATTGTCTGCGAAG3′,(
R14196 T19956 T19955 arg2Of MHB1650,(
R14197 T19957 T19955 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T19674 983-987 Protein denotes Sox6
T19673 975-977 Protein denotes HA
T19672 968-973 Protein denotes c-Myc
T19671 316-319 Protein denotes BSA
T19670 220-224 Protein denotes Sox6
T19669 99-123 Protein denotes T4 polynucleotide kinase

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19959 983-987 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T19958 220-224 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T19662 209-219 http://purl.obolibrary.org/obo/GO_0006412 denotes translated

GO-MF

Id Subject Object Predicate Lexical cue
T19677 988-998 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T19676 537-545 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T19675 263-270 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T19682 988-998 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T19681 537-545 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T19680 988-998 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies
T19679 537-545 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T19678 183-188 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T19661 1360-1411 Sentence denotes 5′AATGCAGtgccAAGGGTCAGAACATTGTCTGCGAAG3′ (MHB1650).
T19660 1283-1359 Sentence denotes 5′AATGCAGAACAAAGGGTCAGAtgagTGTCTGCGAAG3′ (MHB1648); for mutant probe 3 (M3):
T19659 1213-1282 Sentence denotes 5′AACAAAGGGTCAGAACATTGTCTGCGAAG3′ (MHB1644); for mutant probe 2 (M2):
T19658 1136-1212 Sentence denotes 5′AATGCAGAACAAAGGGTCAGAACATTGTCTGCGAAG3′ (MHB1556); for mutant probe 1 (M1):
T19657 1112-1135 Sentence denotes For the 36-bp WT probe:
T19656 1021-1111 Sentence denotes The DNA sequences of the oligonucleotides are as follows (only forward oligos are listed):
T19655 919-1020 Sentence denotes Antibodies used for supershift analyses included c-Myc, HA, and Sox6 antibodies (described as above).
T19654 786-918 Sentence denotes Electrophoresis was performed at a constant 19 mAmp for 4–8 h at room temperature, and the gels were dried prior to autoradiography.
T19653 621-785 Sentence denotes Following addition of the radiolabeled probe, the samples were incubated for 30 min or 60 min at room temperature and loaded on a 4% or 6% (w/v) polyacrylamide gel.
T19652 420-620 Sentence denotes For competition or supershift assays, the indicated unlabelled oligonucleotide competitor (200-fold molar excess) or antibody (3 μl) was added 30 min to 60 min prior to addition of radiolabeled probe.
T19651 279-419 Sentence denotes 100 mM NaCl, 10% glycerol, 200 ng/μl BSA, 50 ng/μl poly (dI-dC) or poly (dG-dC), 10 mM HEPES (pH 7), 0.1 mM EDTA, 0.25 mM DTT, 0.6 mM MgCl2.
T19650 125-278 Sentence denotes EMSA was performed with 5 μg of nuclear proteins from MEL cells or 3 μl of in vitro-translated Sox6 along with the reticulocyte lysate in binding buffer:
T19649 0-124 Sentence denotes Single-stranded complementary oligonucleotides were annealed and end-labeled with [γ-32P] ATP with T4 polynucleotide kinase.
T317 0-124 Sentence denotes Single-stranded complementary oligonucleotides were annealed and end-labeled with [γ-32P] ATP with T4 polynucleotide kinase.
T318 125-278 Sentence denotes EMSA was performed with 5 μg of nuclear proteins from MEL cells or 3 μl of in vitro-translated Sox6 along with the reticulocyte lysate in binding buffer:
T319 279-419 Sentence denotes 100 mM NaCl, 10% glycerol, 200 ng/μl BSA, 50 ng/μl poly (dI-dC) or poly (dG-dC), 10 mM HEPES (pH 7), 0.1 mM EDTA, 0.25 mM DTT, 0.6 mM MgCl2.
T320 420-620 Sentence denotes For competition or supershift assays, the indicated unlabelled oligonucleotide competitor (200-fold molar excess) or antibody (3 μl) was added 30 min to 60 min prior to addition of radiolabeled probe.
T321 621-785 Sentence denotes Following addition of the radiolabeled probe, the samples were incubated for 30 min or 60 min at room temperature and loaded on a 4% or 6% (w/v) polyacrylamide gel.
T322 786-918 Sentence denotes Electrophoresis was performed at a constant 19 mAmp for 4–8 h at room temperature, and the gels were dried prior to autoradiography.
T323 919-1020 Sentence denotes Antibodies used for supershift analyses included c-Myc, HA, and Sox6 antibodies (described as above).
T324 1021-1111 Sentence denotes The DNA sequences of the oligonucleotides are as follows (only forward oligos are listed):
T325 1112-1135 Sentence denotes For the 36-bp WT probe:
T326 1136-1212 Sentence denotes 5′AATGCAGAACAAAGGGTCAGAACATTGTCTGCGAAG3′ (MHB1556); for mutant probe 1 (M1):
T327 1213-1282 Sentence denotes 5′AACAAAGGGTCAGAACATTGTCTGCGAAG3′ (MHB1644); for mutant probe 2 (M2):
T328 1283-1359 Sentence denotes 5′AATGCAGAACAAAGGGTCAGAtgagTGTCTGCGAAG3′ (MHB1648); for mutant probe 3 (M3):
T329 1360-1411 Sentence denotes 5′AATGCAGtgccAAGGGTCAGAACATTGTCTGCGAAG3′ (MHB1650).

simple1

Id Subject Object Predicate Lexical cue
T19693 983-987 Protein denotes Sox6
T19692 975-977 Protein denotes HA
T19691 968-973 Protein denotes c-Myc
T19690 316-319 Protein denotes BSA
T19689 220-224 Protein denotes Sox6
T19688 99-123 Protein denotes T4 polynucleotide kinase

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T20316 983-987 Protein denotes Sox6
T20315 975-977 Protein denotes HA
T20314 968-973 Protein denotes c-Myc
T20313 316-319 Protein denotes BSA
T20312 220-224 Protein denotes Sox6
T20311 99-123 Protein denotes T4 polynucleotide kinase

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T19965 983-987 Protein denotes Sox6
T19964 975-977 Protein denotes HA
T19963 968-973 Protein denotes c-Myc
T19962 316-319 Protein denotes BSA
T19961 220-224 Protein denotes Sox6
T19960 99-123 Protein denotes T4 polynucleotide kinase

DLUT931

Id Subject Object Predicate Lexical cue
T19978 263-270 Binding denotes binding
T19977 983-987 Protein denotes Sox6
T19976 975-977 Protein denotes HA
T19975 968-973 Protein denotes c-Myc
T19974 316-319 Protein denotes BSA
T19973 220-224 Protein denotes Sox6
T19972 99-123 Protein denotes T4 polynucleotide kinase
R14198 T19973 T19978 themeOf Sox6,binding

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T20310 983-998 Entity denotes Sox6 antibodies
T20309 975-977 Protein denotes HA
T20308 749-784 Entity denotes a 4% or 6% (w/v) polyacrylamide gel
T20307 537-552 Protein denotes antibody (3 μl)
T20306 919-934 Entity denotes Antibodies used
T20305 200-224 Protein denotes in vitro-translated Sox6
T20304 352-357 Protein denotes dG-dC
T20303 1039-1062 Entity denotes of the oligonucleotides
T20302 90-123 Entity denotes ATP with T4 polynucleotide kinase
T20301 99-123 Protein denotes T4 polynucleotide kinase
T20300 240-252 Entity denotes reticulocyte
T20299 749-784 Entity denotes a 4% or 6% (w/v) polyacrylamide gel
T20298 968-973 Protein denotes c-Myc
T20297 292-304 Entity denotes 10% glycerol
T20296 0-46 Entity denotes Single-stranded complementary oligonucleotides
T20295 873-881 Entity denotes the gels
T20294 380-405 Entity denotes 0.1 mM EDTA, 0.25 mM DTT,
T20293 472-533 Entity denotes unlabelled oligonucleotide competitor (200-fold molar excess)
T20292 1208-1210 Entity denotes M1
T20291 1278-1280 Entity denotes M2
T20290 316-320 Protein denotes BSA,
T20289 330-342 Entity denotes poly (dI-dC)
T20288 1021-1077 Entity denotes The DNA sequences of the oligonucleotides are as follows
T20287 346-371 Entity denotes poly (dG-dC), 10 mM HEPES
T20286 157-188 Protein denotes nuclear proteins from MEL cells
T20285 842-867 Entity denotes 4–8 h at room temperature
T20284 393-404 Entity denotes 0.25 mM DTT
T20283 346-359 Entity denotes poly (dG-dC),
T20282 279-305 Entity denotes 100 mM NaCl, 10% glycerol,
T20281 819-837 Entity denotes a constant 19 mAmp
T20280 99-101 Entity denotes T4
T20279 983-987 Protein denotes Sox6

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T20273 1410-1411 . denotes .
T20272 1409-1410 -RRB- denotes )
T20271 1402-1409 NNP denotes MHB1650
T20270 1401-1402 -LRB- denotes (
T20269 1399-1400 NNP denotes ′
T20268 1362-1399 NNP denotes AATGCAGtgccAAGGGTCAGAACATTGTCTGCGAAG3
T20267 1361-1362 NN denotes ′
T20266 1360-1361 CD denotes 5
T20265 1358-1359 : denotes :
T20264 1357-1358 -RRB- denotes )
T20263 1355-1357 NN denotes M3
T20262 1354-1355 -LRB- denotes (
T20261 1352-1353 CD denotes 3
T20260 1346-1351 NN denotes probe
T20259 1339-1345 JJ denotes mutant
T20258 1335-1338 IN denotes for
T20226 1188-1191 IN denotes for
T20225 1186-1187 : denotes ;
T20224 1185-1186 -RRB- denotes )
T20223 1178-1185 NNP denotes MHB1556
T20222 1177-1178 -LRB- denotes (
T20221 1175-1176 NNP denotes ′
T20220 1138-1175 NNP denotes AATGCAGAACAAAGGGTCAGAACATTGTCTGCGAAG3
T20219 1137-1138 CD denotes ′
T20218 1136-1137 CD denotes 5
T20217 1134-1135 : denotes :
T20216 1129-1134 NN denotes probe
T20215 1126-1128 NNP denotes WT
T20214 1120-1125 JJ denotes 36-bp
T20213 1116-1119 DT denotes the
T20212 1112-1115 IN denotes For
T20211 1110-1111 : denotes :
T20210 1109-1110 -RRB- denotes )
T20209 1103-1109 VBN denotes listed
T20208 1099-1102 VBP denotes are
T20207 1092-1098 NNS denotes oligos
T20206 1084-1091 RB denotes forward
T20205 1079-1083 RB denotes only
T20204 1078-1079 -LRB- denotes (
T20203 1070-1077 VBZ denotes follows
T20202 1067-1069 IN denotes as
T20201 1063-1066 VBP denotes are
T20200 1046-1062 NNS denotes oligonucleotides
T20199 1042-1045 DT denotes the
T20198 1039-1041 IN denotes of
T20197 1029-1038 NNS denotes sequences
T20196 1025-1028 NNP denotes DNA
T20195 1021-1024 DT denotes The
T20194 1019-1020 . denotes .
T20193 1018-1019 -RRB- denotes )
T20192 1013-1018 IN denotes above
T20191 1010-1012 RB denotes as
T20190 1000-1009 VBN denotes described
T20189 999-1000 -LRB- denotes (
T20188 988-998 NNS denotes antibodies
T20187 983-987 NNP denotes Sox6
T20186 979-982 CC denotes and
T20185 977-978 , denotes ,
T20184 975-977 NNP denotes HA
T20183 973-974 , denotes ,
T20182 968-973 NNP denotes c-Myc
T20181 959-967 VBD denotes included
T20180 950-958 NNS denotes analyses
T20179 939-949 NN denotes supershift
T20178 935-938 IN denotes for
T20177 930-934 VBD denotes used
T20176 919-929 NNS denotes Antibodies
T20175 917-918 . denotes .
T20174 902-917 NN denotes autoradiography
T20173 899-901 TO denotes to
T20172 893-898 RB denotes prior
T20171 887-892 VBN denotes dried
T20170 882-886 VBD denotes were
T20169 877-881 NNS denotes gels
T20168 873-876 DT denotes the
T20167 869-872 CC denotes and
T20166 867-868 , denotes ,
T20165 856-867 NN denotes temperature
T20164 851-855 NN denotes room
T20163 848-850 IN denotes at
T20162 846-847 NN denotes h
T20161 844-845 CD denotes 8
T20160 842-843 CD denotes 4
T20159 838-841 IN denotes for
T20158 833-837 NN denotes mAmp
T20157 830-832 CD denotes 19
T20156 821-829 JJ denotes constant
T20155 819-820 DT denotes a
T20154 816-818 IN denotes at
T20153 806-815 VBN denotes performed
T20152 802-805 VBD denotes was
T20151 786-801 NNP denotes Electrophoresis
T20150 784-785 . denotes .
T20149 781-784 NN denotes gel
T20148 766-780 NN denotes polyacrylamide
T20147 764-765 -RRB- denotes )
T20146 761-764 FW denotes w/v
T20145 760-761 -LRB- denotes (
T20144 758-759 NN denotes %
T20143 757-758 CD denotes 6
T20142 754-756 CC denotes or
T20141 752-753 NN denotes %
T20140 751-752 CD denotes 4
T20139 749-750 DT denotes a
T20138 746-748 IN denotes on
T20137 739-745 VBN denotes loaded
T20136 735-738 CC denotes and
T20135 723-734 NN denotes temperature
T20134 718-722 NN denotes room
T20133 715-717 IN denotes at
T20132 711-714 NN denotes min
T20131 708-710 CD denotes 60
T20130 705-707 CC denotes or
T20129 701-704 NN denotes min
T20128 698-700 CD denotes 30
T20127 694-697 IN denotes for
T20126 684-693 VBN denotes incubated
T20125 679-683 VBD denotes were
T20124 671-678 NNS denotes samples
T20123 667-670 DT denotes the
T20122 665-666 , denotes ,
T20121 660-665 NN denotes probe
T20120 647-659 JJ denotes radiolabeled
T20119 643-646 DT denotes the
T20118 640-642 IN denotes of
T20117 631-639 NN denotes addition
T20116 621-630 VBG denotes Following
T20115 619-620 . denotes .
T20114 614-619 NN denotes probe
T20113 601-613 JJ denotes radiolabeled
T20112 598-600 IN denotes of
T20111 589-597 NN denotes addition
T20110 586-588 TO denotes to
T20109 580-585 RB denotes prior
T20108 576-579 NN denotes min
T20107 573-575 CD denotes 60
T20106 570-572 TO denotes to
T20105 566-569 NN denotes min
T20104 563-565 CD denotes 30
T20103 557-562 VBN denotes added
T20102 553-556 VBD denotes was
T20101 551-552 -RRB- denotes )
T20100 549-551 NN denotes μl
T20099 547-548 CD denotes 3
T20098 546-547 -LRB- denotes (
T20097 537-545 NN denotes antibody
T20096 534-536 CC denotes or
T20095 532-533 -RRB- denotes )
T20094 526-532 NN denotes excess
T20093 520-525 NN denotes molar
T20092 511-519 JJ denotes 200-fold
T20091 510-511 -LRB- denotes (
T20090 499-509 NN denotes competitor
T20089 483-498 NN denotes oligonucleotide
T20088 472-482 JJ denotes unlabelled
T20087 462-471 VBN denotes indicated
T20086 458-461 DT denotes the
T20085 456-457 , denotes ,
T20084 450-456 NNS denotes assays
T20083 439-449 NN denotes supershift
T20082 436-438 CC denotes or
T20081 424-435 NN denotes competition
T20080 420-423 IN denotes For
T20079 418-419 . denotes .
T20078 413-418 NNP denotes MgCl2
T20077 410-412 NNP denotes mM
T20076 406-409 CD denotes 0.6
T20075 404-405 , denotes ,
T20074 401-404 NNP denotes DTT
T20073 398-400 NNP denotes mM
T20072 393-397 CD denotes 0.25
T20071 391-392 , denotes ,
T20070 387-391 NNP denotes EDTA
T20069 384-386 NNP denotes mM
T20068 380-383 CD denotes 0.1
T20067 378-379 , denotes ,
T20066 377-378 -RRB- denotes )
T20065 376-377 CD denotes 7
T20064 373-375 NN denotes pH
T20063 372-373 -LRB- denotes (
T20062 366-371 NNS denotes HEPES
T20061 363-365 NN denotes mM
T20060 360-362 CD denotes 10
T20059 358-359 , denotes ,
T20058 357-358 -RRB- denotes )
T20057 352-357 JJ denotes dG-dC
T20056 351-352 -LRB- denotes (
T20055 346-350 NN denotes poly
T20054 343-345 CC denotes or
T20053 341-342 -RRB- denotes )
T20052 336-341 JJ denotes dI-dC
T20051 335-336 -LRB- denotes (
T20050 330-334 NN denotes poly
T20049 327-329 NN denotes μl
T20048 326-327 NN denotes /
T20047 324-326 NN denotes ng
T20046 321-323 CD denotes 50
T20045 319-320 , denotes ,
T20044 316-319 NNP denotes BSA
T20043 313-315 NN denotes μl
T20042 312-313 NN denotes /
T20041 310-312 NN denotes ng
T20040 306-309 CD denotes 200
T20039 304-305 , denotes ,
T20038 296-304 NN denotes glycerol
T20037 294-295 NN denotes %
T20036 292-294 CD denotes 10
T20035 290-291 , denotes ,
T20034 286-290 NNP denotes NaCl
T20033 283-285 NNP denotes mM
T20032 279-282 CD denotes 100
T20031 277-278 : denotes :
T20030 271-277 NN denotes buffer
T20029 263-270 JJ denotes binding
T20028 260-262 IN denotes in
T20027 253-259 NN denotes lysate
T20026 240-252 NN denotes reticulocyte
T20025 236-239 DT denotes the
T20024 231-235 IN denotes with
T20023 225-230 IN denotes along
T20022 220-224 NNS denotes Sox6
T20021 203-219 JJ denotes vitro-translated
T20020 200-202 IN denotes in
T20019 197-199 IN denotes of
T20018 194-196 NN denotes μl
T20017 192-193 CD denotes 3
T20016 189-191 CC denotes or
T20015 183-188 NNS denotes cells
T20014 179-182 NNP denotes MEL
T20013 174-178 IN denotes from
T20012 165-173 NNS denotes proteins
T20011 157-164 JJ denotes nuclear
T19990 47-51 VBD denotes were
T19989 30-46 NNS denotes oligonucleotides
T19988 16-29 JJ denotes complementary
T19987 0-15 JJ denotes Single-stranded
T20257 1333-1334 : denotes ;
T20256 1332-1333 -RRB- denotes )
T20255 1325-1332 NNP denotes MHB1648
T20254 1324-1325 -LRB- denotes (
T20253 1322-1323 NNP denotes ′
T20252 1285-1322 NNP denotes AATGCAGAACAAAGGGTCAGAtgagTGTCTGCGAAG3
T20251 1284-1285 NN denotes ′
T20250 1283-1284 CD denotes 5
T20249 1281-1282 : denotes :
T20248 1280-1281 -RRB- denotes )
T20247 1278-1280 NN denotes M2
T20246 1277-1278 -LRB- denotes (
T20245 1275-1276 CD denotes 2
T20244 1269-1274 NN denotes probe
T20243 1262-1268 JJ denotes mutant
T20242 1258-1261 IN denotes for
T20241 1256-1257 : denotes ;
T20240 1255-1256 -RRB- denotes )
T20239 1248-1255 NNP denotes MHB1644
T20238 1247-1248 -LRB- denotes (
T20237 1245-1246 NNP denotes ′
T20236 1215-1245 NNP denotes AACAAAGGGTCAGAACATTGTCTGCGAAG3
T20235 1214-1215 CD denotes ′
T20234 1213-1214 CD denotes 5
T20233 1211-1212 : denotes :
T20232 1210-1211 -RRB- denotes )
T20231 1208-1210 NN denotes M1
T20230 1207-1208 -LRB- denotes (
T20229 1205-1206 CD denotes 1
T20228 1199-1204 NN denotes probe
T20227 1192-1198 JJ denotes mutant
T20010 154-156 IN denotes of
T20009 151-153 NN denotes μg
T20008 149-150 CD denotes 5
T20007 144-148 IN denotes with
T20006 134-143 VBN denotes performed
T20005 130-133 VBD denotes was
T20004 125-129 NNP denotes EMSA
T20003 123-124 . denotes .
T20002 117-123 NN denotes kinase
T20001 102-116 NN denotes polynucleotide
T20000 99-101 CD denotes T4
T19999 94-98 IN denotes with
T19998 90-93 NNP denotes ATP
T19997 88-89 NNP denotes ]
T19996 83-88 NNP denotes γ-32P
T19995 82-83 NNP denotes [
T19994 77-81 IN denotes with
T19993 65-76 JJ denotes end-labeled
T19992 61-64 CC denotes and
T19991 52-60 JJ denotes annealed
R14201 T19987 T19989 amod Single-stranded,oligonucleotides
R14202 T19988 T19989 amod complementary,oligonucleotides
R14203 T19989 T19990 nsubj oligonucleotides,were
R14204 T19990 T19990 ROOT were,were
R14205 T19991 T19990 acomp annealed,were
R14206 T19992 T19991 cc and,annealed
R14207 T19993 T19991 conj end-labeled,annealed
R14208 T19994 T19991 prep with,annealed
R14209 T19995 T19998 compound [,ATP
R14210 T19996 T19998 compound γ-32P,ATP
R14211 T19997 T19998 compound ],ATP
R14212 T19998 T19994 pobj ATP,with
R14213 T19999 T19994 prep with,with
R14214 T20000 T20002 nummod T4,kinase
R14215 T20001 T20002 compound polynucleotide,kinase
R14216 T20002 T19999 pobj kinase,with
R14217 T20003 T19990 punct .,were
R14218 T20004 T20006 nsubjpass EMSA,performed
R14219 T20005 T20006 auxpass was,performed
R14220 T20006 T20006 ROOT performed,performed
R14221 T20007 T20006 prep with,performed
R14222 T20008 T20009 nummod 5,μg
R14223 T20009 T20007 pobj μg,with
R14224 T20010 T20009 prep of,μg
R14225 T20011 T20012 amod nuclear,proteins
R14226 T20012 T20010 pobj proteins,of
R14227 T20013 T20009 prep from,μg
R14228 T20014 T20015 compound MEL,cells
R14229 T20015 T20013 pobj cells,from
R14230 T20016 T20015 cc or,cells
R14231 T20017 T20018 nummod 3,μl
R14232 T20018 T20015 conj μl,cells
R14233 T20019 T20018 prep of,μl
R14234 T20020 T20018 prep in,μl
R14235 T20021 T20022 amod vitro-translated,Sox6
R14236 T20022 T20020 pobj Sox6,in
R14237 T20023 T20009 prep along,μg
R14238 T20024 T20023 prep with,along
R14239 T20025 T20027 det the,lysate
R14240 T20026 T20027 compound reticulocyte,lysate
R14241 T20027 T20024 pobj lysate,with
R14242 T20028 T20027 prep in,lysate
R14243 T20029 T20030 amod binding,buffer
R14244 T20030 T20028 pobj buffer,in
R14245 T20031 T20009 punct :,μg
R14246 T20032 T20034 nummod 100,NaCl
R14247 T20033 T20034 compound mM,NaCl
R14248 T20034 T20009 appos NaCl,μg
R14249 T20035 T20034 punct ",",NaCl
R14250 T20036 T20037 nummod 10,%
R14251 T20037 T20038 compound %,glycerol
R14252 T20038 T20034 appos glycerol,NaCl
R14253 T20039 T20038 punct ",",glycerol
R14254 T20040 T20041 nummod 200,ng
R14255 T20041 T20050 npadvmod ng,poly
R14256 T20042 T20044 nmod /,BSA
R14257 T20043 T20044 compound μl,BSA
R14258 T20044 T20050 nmod BSA,poly
R14259 T20045 T20050 punct ",",poly
R14260 T20046 T20047 nummod 50,ng
R14261 T20047 T20050 compound ng,poly
R14262 T20048 T20050 compound /,poly
R14263 T20049 T20050 compound μl,poly
R14264 T20050 T20009 appos poly,μg
R14265 T20051 T20050 punct (,poly
R14266 T20052 T20050 appos dI-dC,poly
R14267 T20053 T20052 punct ),dI-dC
R14268 T20054 T20052 cc or,dI-dC
R14269 T20055 T20055 ROOT poly,poly
R14270 T20056 T20057 punct (,dG-dC
R14271 T20057 T20055 appos dG-dC,poly
R14272 T20058 T20057 punct ),dG-dC
R14273 T20059 T20055 punct ",",poly
R14274 T20060 T20062 nummod 10,HEPES
R14275 T20061 T20062 compound mM,HEPES
R14276 T20062 T20055 appos HEPES,poly
R14277 T20063 T20064 punct (,pH
R14278 T20064 T20062 parataxis pH,HEPES
R14279 T20065 T20064 nummod 7,pH
R14280 T20066 T20064 punct ),pH
R14281 T20067 T20064 punct ",",pH
R14282 T20068 T20070 nummod 0.1,EDTA
R14283 T20069 T20070 compound mM,EDTA
R14284 T20070 T20064 appos EDTA,pH
R14285 T20071 T20070 punct ",",EDTA
R14286 T20072 T20074 nummod 0.25,DTT
R14287 T20073 T20074 compound mM,DTT
R14288 T20074 T20070 appos DTT,EDTA
R14289 T20075 T20074 punct ",",DTT
R14290 T20076 T20078 nummod 0.6,MgCl2
R14291 T20077 T20078 compound mM,MgCl2
R14292 T20078 T20074 appos MgCl2,DTT
R14293 T20079 T20006 punct .,performed
R14294 T20080 T20103 prep For,added
R14295 T20081 T20080 pobj competition,For
R14296 T20082 T20081 cc or,competition
R14297 T20083 T20084 compound supershift,assays
R14298 T20084 T20081 conj assays,competition
R14299 T20085 T20084 punct ",",assays
R14300 T20086 T20090 det the,competitor
R14301 T20087 T20090 amod indicated,competitor
R14302 T20088 T20090 amod unlabelled,competitor
R14303 T20089 T20090 compound oligonucleotide,competitor
R14304 T20090 T20084 conj competitor,assays
R14305 T20091 T20090 punct (,competitor
R14306 T20092 T20094 amod 200-fold,excess
R14307 T20093 T20094 compound molar,excess
R14308 T20094 T20090 appos excess,competitor
R14309 T20095 T20090 punct ),competitor
R14310 T20096 T20090 cc or,competitor
R14311 T20097 T20090 conj antibody,competitor
R14312 T20098 T20097 punct (,antibody
R14313 T20099 T20100 nummod 3,μl
R14314 T20100 T20097 appos μl,antibody
R14315 T20101 T20097 punct ),antibody
R14316 T20102 T20103 auxpass was,added
R14317 T20103 T20103 ROOT added,added
R14318 T20104 T20107 quantmod 30,60
R14319 T20105 T20107 quantmod min,60
R14320 T20106 T20107 quantmod to,60
R14321 T20107 T20103 dobj 60,added
R14322 T20108 T20107 quantmod min,60
R14323 T20109 T20103 advmod prior,added
R14324 T20110 T20103 prep to,added
R14325 T20111 T20110 pobj addition,to
R14326 T20112 T20111 prep of,addition
R14327 T20113 T20114 amod radiolabeled,probe
R14328 T20114 T20112 pobj probe,of
R14329 T20115 T20103 punct .,added
R14330 T20116 T20126 prep Following,incubated
R14331 T20117 T20116 pobj addition,Following
R14332 T20118 T20117 prep of,addition
R14333 T20119 T20121 det the,probe
R14334 T20120 T20121 compound radiolabeled,probe
R14335 T20121 T20118 pobj probe,of
R14336 T20122 T20126 punct ",",incubated
R14337 T20123 T20124 det the,samples
R14338 T20124 T20126 nsubjpass samples,incubated
R14339 T20125 T20126 auxpass were,incubated
R14340 T20126 T20126 ROOT incubated,incubated
R14341 T20127 T20126 prep for,incubated
R14342 T20128 T20129 nummod 30,min
R14343 T20129 T20127 pobj min,for
R14344 T20130 T20129 cc or,min
R14345 T20131 T20132 nummod 60,min
R14346 T20132 T20129 conj min,min
R14347 T20133 T20132 prep at,min
R14348 T20134 T20135 compound room,temperature
R14349 T20135 T20133 pobj temperature,at
R14350 T20136 T20132 cc and,min
R14351 T20137 T20129 acl loaded,min
R14352 T20138 T20137 prep on,loaded
R14353 T20139 T20141 det a,%
R14354 T20140 T20141 nummod 4,%
R14355 T20141 T20138 pobj %,on
R14356 T20142 T20141 cc or,%
R14357 T20143 T20144 nummod 6,%
R14358 T20144 T20141 conj %,%
R14359 T20145 T20146 punct (,w/v
R14360 T20146 T20144 appos w/v,%
R14361 T20147 T20126 punct ),incubated
R14362 T20148 T20149 compound polyacrylamide,gel
R14363 T20149 T20149 ROOT gel,gel
R14364 T20150 T20149 punct .,gel
R14365 T20151 T20153 nsubjpass Electrophoresis,performed
R14366 T20152 T20153 auxpass was,performed
R14367 T20153 T20153 ROOT performed,performed
R14368 T20154 T20153 prep at,performed
R14369 T20155 T20158 det a,mAmp
R14370 T20156 T20158 amod constant,mAmp
R14371 T20157 T20158 nummod 19,mAmp
R14372 T20158 T20154 pobj mAmp,at
R14373 T20159 T20153 prep for,performed
R14374 T20160 T20159 pobj 4,for
R14375 T20161 T20162 nummod 8,h
R14376 T20162 T20171 nsubjpass h,dried
R14377 T20163 T20162 prep at,h
R14378 T20164 T20165 compound room,temperature
R14379 T20165 T20163 pobj temperature,at
R14380 T20166 T20162 punct ",",h
R14381 T20167 T20162 cc and,h
R14382 T20168 T20169 det the,gels
R14383 T20169 T20162 conj gels,h
R14384 T20170 T20171 auxpass were,dried
R14385 T20171 T20153 conj dried,performed
R14386 T20172 T20171 advmod prior,dried
R14387 T20173 T20172 prep to,prior
R14388 T20174 T20173 pobj autoradiography,to
R14389 T20175 T20171 punct .,dried
R14390 T20176 T20177 nsubj Antibodies,used
R14391 T20177 T20177 ROOT used,used
R14392 T20178 T20177 prep for,used
R14393 T20179 T20180 compound supershift,analyses
R14394 T20180 T20178 pobj analyses,for
R14395 T20181 T20177 conj included,used
R14396 T20182 T20188 nmod c-Myc,antibodies
R14397 T20183 T20182 punct ",",c-Myc
R14398 T20184 T20182 conj HA,c-Myc
R14399 T20185 T20184 punct ",",HA
R14400 T20186 T20184 cc and,HA
R14401 T20187 T20184 conj Sox6,HA
R14402 T20188 T20181 dobj antibodies,included
R14403 T20189 T20188 punct (,antibodies
R14404 T20190 T20188 acl described,antibodies
R14405 T20191 T20190 prep as,described
R14406 T20192 T20191 pcomp above,as
R14407 T20193 T20188 punct ),antibodies
R14408 T20194 T20177 punct .,used
R14409 T20195 T20197 det The,sequences
R14410 T20196 T20197 compound DNA,sequences
R14411 T20197 T20201 nsubj sequences,are
R14412 T20198 T20197 prep of,sequences
R14413 T20199 T20200 det the,oligonucleotides
R14414 T20200 T20198 pobj oligonucleotides,of
R14415 T20201 T20201 ROOT are,are
R14416 T20202 T20203 mark as,follows
R14417 T20203 T20201 advcl follows,are
R14418 T20204 T20209 punct (,listed
R14419 T20205 T20206 advmod only,forward
R14420 T20206 T20209 advmod forward,listed
R14421 T20207 T20209 nsubjpass oligos,listed
R14422 T20208 T20209 auxpass are,listed
R14423 T20209 T20201 advcl listed,are
R14424 T20210 T20209 punct ),listed
R14425 T20211 T20237 punct :,′
R14426 T20212 T20237 prep For,′
R14427 T20213 T20216 det the,probe
R14428 T20214 T20216 amod 36-bp,probe
R14429 T20215 T20216 compound WT,probe
R14430 T20216 T20212 pobj probe,For
R14431 T20217 T20237 punct :,′
R14432 T20218 T20221 nummod 5,′
R14433 T20219 T20221 nummod ′,′
R14434 T20220 T20221 compound AATGCAGAACAAAGGGTCAGAACATTGTCTGCGAAG3,′
R14435 T20221 T20237 npadvmod ′,′
R14436 T20222 T20223 punct (,MHB1556
R14437 T20223 T20221 appos MHB1556,′
R14438 T20224 T20223 punct ),MHB1556
R14439 T20225 T20237 punct ;,′
R14440 T20226 T20237 prep for,′
R14441 T20227 T20228 amod mutant,probe
R14442 T20228 T20226 pobj probe,for
R14443 T20229 T20228 nummod 1,probe
R14444 T20230 T20228 punct (,probe
R14445 T20231 T20228 appos M1,probe
R14446 T20232 T20228 punct ),probe
R14447 T20233 T20237 punct :,′
R14448 T20234 T20237 nummod 5,′
R14449 T20235 T20237 nummod ′,′
R14450 T20236 T20237 compound AACAAAGGGTCAGAACATTGTCTGCGAAG3,′
R14451 T20237 T20237 ROOT ′,′
R14452 T20238 T20239 punct (,MHB1644
R14453 T20239 T20237 appos MHB1644,′
R14454 T20240 T20239 punct ),MHB1644
R14455 T20241 T20253 punct ;,′
R14456 T20242 T20253 prep for,′
R14457 T20243 T20244 amod mutant,probe
R14458 T20244 T20242 pobj probe,for
R14459 T20245 T20244 nummod 2,probe
R14460 T20246 T20244 punct (,probe
R14461 T20247 T20244 appos M2,probe
R14462 T20248 T20244 punct ),probe
R14463 T20249 T20253 punct :,′
R14464 T20250 T20251 nummod 5,′
R14465 T20251 T20253 compound ′,′
R14466 T20252 T20253 compound AATGCAGAACAAAGGGTCAGAtgagTGTCTGCGAAG3,′
R14467 T20253 T20237 conj ′,′
R14468 T20254 T20253 punct (,′
R14469 T20255 T20253 appos MHB1648,′
R14470 T20256 T20253 punct ),′
R14471 T20257 T20253 punct ;,′
R14472 T20258 T20258 ROOT for,for
R14473 T20259 T20260 amod mutant,probe
R14474 T20260 T20258 pobj probe,for
R14475 T20261 T20260 nummod 3,probe
R14476 T20262 T20260 punct (,probe
R14477 T20263 T20260 appos M3,probe
R14478 T20264 T20260 punct ),probe
R14479 T20265 T20258 punct :,for
R14480 T20266 T20267 nummod 5,′
R14481 T20267 T20269 compound ′,′
R14482 T20268 T20269 compound AATGCAGtgccAAGGGTCAGAACATTGTCTGCGAAG3,′
R14483 T20269 T20269 ROOT ′,′
R14484 T20270 T20269 punct (,′
R14485 T20271 T20269 appos MHB1650,′
R14486 T20272 T20269 punct ),′
R14487 T20273 T20237 punct .,′

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T19687 983-987 Protein denotes Sox6
T19686 975-977 Protein denotes HA
T19685 968-973 Protein denotes c-Myc
T19684 220-224 Protein denotes Sox6
T19683 99-123 Protein denotes T4 polynucleotide kinase

testone

Id Subject Object Predicate Lexical cue
T19635 983-987 Protein denotes Sox6
T19634 975-977 Protein denotes HA
T19633 968-973 Protein denotes c-Myc
T19632 316-319 Protein denotes BSA
T19631 220-224 Protein denotes Sox6
T19630 99-123 Protein denotes T4 polynucleotide kinase

test3

Id Subject Object Predicate Lexical cue
T19647 983-987 Protein denotes Sox6
T19646 975-977 Protein denotes HA
T19645 968-973 Protein denotes c-Myc
T19644 316-319 Protein denotes BSA
T19643 220-224 Protein denotes Sox6
T19642 99-123 Protein denotes T4 polynucleotide kinase
T19641 983-987 Protein denotes Sox6
T19640 975-977 Protein denotes HA
T19639 968-973 Protein denotes c-Myc
T19638 316-319 Protein denotes BSA
T19637 220-224 Protein denotes Sox6
T19636 99-123 Protein denotes T4 polynucleotide kinase
R13934 T19644 T19643 themeOf BSA,Sox6