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PMC:1359074 / 40246-40767 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-14530442-85761028 276-278 14530442 denotes 15
T81428 276-278 14530442 denotes 15

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T19240 513-520 NN denotes control
T19239 504-512 JJ denotes negative
T19238 502-503 DT denotes a
T19237 499-501 IN denotes as
T19236 488-498 VB denotes translated
T19235 483-487 RB denotes also
T19234 479-482 VB denotes was
T19233 470-478 NN denotes sequence
T19232 463-469 NN denotes coding
T19231 458-462 NN denotes Sox6
T19230 454-457 DT denotes the
T19229 446-453 IN denotes without
T19228 439-445 NN denotes vector
T19227 437-438 DT denotes A
T19226 434-435 -RRB- denotes )
T19225 427-434 NNP denotes Promega
T19224 425-426 -COMMA- denotes ,
T19223 418-425 NNP denotes Systems
T19222 392-417 NNP denotes Transcription/Translation
T19221 384-391 NNP denotes Coupled
T19220 378-383 NNP denotes Quick
T19219 373-377 NNP denotes TNT®
T19218 372-373 -LRB- denotes (
T19217 365-371 NN denotes system
T19216 351-364 JJ denotes translational
T19215 345-350 FW denotes vitro
T19214 342-344 FW denotes in
T19213 336-341 VB denotes based
T19212 329-335 NN denotes lysate
T19211 316-328 NN denotes reticulocyte
T19210 314-315 DT denotes a
T19209 311-313 IN denotes in
T19208 301-310 VB denotes performed
T19207 297-300 VB denotes was
T19206 285-296 NN denotes translation
T19205 281-284 DT denotes The
T19204 278-279 -RRB- denotes ]
T19203 276-278 CD denotes 15
T19202 275-276 -LRB- denotes [
T19201 268-274 IN denotes before
T19199 254-257 VB denotes was
T19198 252-253 -COMMA- denotes ,
T19197 250-252 NN denotes HA
T19196 246-249 CC denotes and
T19195 240-245 NN denotes c-Myc
T19194 235-239 IN denotes with
T19193 228-234 VB denotes tagged
T19192 226-227 -COMMA- denotes ,
T19191 220-226 NN denotes vector
T19190 209-219 NN denotes expression
T19189 197-208 NN denotes translation
T19188 191-196 FW denotes vitro
T19187 188-190 FW denotes in
T19186 183-187 NN denotes Sox6
T19185 179-182 DT denotes The
T19184 176-177 -RRB- denotes )
T19183 170-176 NNP denotes States
T19182 163-169 NNP denotes United
T19181 161-162 -COMMA- denotes ,
T19180 151-161 NNP denotes California
T19179 149-150 -COMMA- denotes ,
T19178 141-149 NNP denotes Carlsbad
T19177 139-140 -COMMA- denotes ,
T19176 134-139 NNP denotes Motif
T19175 127-133 JJ denotes Active
T19174 126-127 -LRB- denotes (
T19173 122-125 NN denotes kit
T19172 120-121 DT denotes a
T19171 114-119 VB denotes using
T19170 112-113 -RRB- denotes )
T19169 109-112 CD denotes 107
T19168 107-108 CC denotes ×
T19167 105-106 CD denotes 2
T19166 104-105 -LRB- denotes (
T19165 98-103 NN denotes cells
T19164 94-97 NN denotes MEL
T19163 89-93 IN denotes from
T19162 80-88 VB denotes prepared
T19161 75-79 VB denotes were
T19160 66-74 NN denotes extracts
T19159 58-65 JJ denotes Nuclear
T19158 52-56 NN denotes Sox6
T19157 49-51 IN denotes of
T19156 37-48 NN denotes translation
T19155 31-36 FW denotes vitro
T19154 28-30 FW denotes in
T19153 24-27 CC denotes and
T19152 16-23 NN denotes extract
T19151 8-15 NN denotes protein
T19150 0-7 JJ denotes Nuclear
T19200 258-267 VB denotes described
R13578 T19152 T19150 arg1Of extract,Nuclear
R13579 T19152 T19151 arg1Of extract,protein
R13580 T19152 T19153 arg1Of extract,and
R13581 T19155 T19154 arg1Of vitro,in
R13582 T19156 T19153 arg2Of translation,and
R13583 T19156 T19155 arg1Of translation,vitro
R13584 T19156 T19157 arg1Of translation,of
R13585 T19158 T19157 arg2Of Sox6,of
R13586 T19160 T19159 arg1Of extracts,Nuclear
R13587 T19160 T19161 arg1Of extracts,were
R13588 T19160 T19162 arg2Of extracts,prepared
R13589 T19162 T19161 arg2Of prepared,were
R13590 T19162 T19163 arg1Of prepared,from
R13591 T19165 T19163 arg2Of cells,from
R13592 T19165 T19164 arg1Of cells,MEL
R13593 T19165 T19166 arg1Of cells,(
R13594 T19165 T19171 arg1Of cells,using
R13595 T19167 T19168 arg1Of 2,×
R13596 T19168 T19166 arg2Of ×,(
R13597 T19169 T19168 arg2Of 107,×
R13598 T19170 T19166 arg3Of ),(
R13599 T19173 T19171 arg2Of kit,using
R13600 T19173 T19172 arg1Of kit,a
R13601 T19173 T19174 arg1Of kit,(
R13602 T19176 T19177 arg1Of Motif,","
R13603 T19177 T19179 arg1Of ",",","
R13604 T19178 T19177 arg2Of Carlsbad,","
R13605 T19179 T19175 arg1Of ",",Active
R13606 T19179 T19181 arg1Of ",",","
R13607 T19180 T19179 arg2Of California,","
R13608 T19181 T19174 arg2Of ",",(
R13609 T19183 T19181 arg2Of States,","
R13610 T19183 T19182 arg1Of States,United
R13611 T19184 T19174 arg3Of ),(
R13612 T19188 T19187 arg1Of vitro,in
R13613 T19191 T19185 arg1Of vector,The
R13614 T19191 T19186 arg1Of vector,Sox6
R13615 T19191 T19188 arg1Of vector,vitro
R13616 T19191 T19189 arg1Of vector,translation
R13617 T19191 T19190 arg1Of vector,expression
R13618 T19191 T19192 arg1Of vector,","
R13619 T19191 T19193 arg2Of vector,tagged
R13620 T19191 T19199 arg1Of vector,was
R13621 T19191 T19200 arg2Of vector,described
R13622 T19193 T19194 arg1Of tagged,with
R13623 T19195 T19196 arg1Of c-Myc,and
R13624 T19196 T19194 arg2Of and,with
R13625 T19197 T19196 arg2Of HA,and
R13626 T19200 T19198 arg1Of described,","
R13627 T19200 T19199 arg2Of described,was
R13628 T19200 T19201 arg1Of described,before
R13629 T19203 T19201 arg2Of 15,before
R13630 T19203 T19202 arg2Of 15,[
R13631 T19204 T19202 arg3Of ],[
R13632 T19206 T19205 arg1Of translation,The
R13633 T19206 T19207 arg1Of translation,was
R13634 T19206 T19208 arg2Of translation,performed
R13635 T19208 T19207 arg2Of performed,was
R13636 T19208 T19209 arg1Of performed,in
R13637 T19212 T19209 arg2Of lysate,in
R13638 T19212 T19210 arg1Of lysate,a
R13639 T19212 T19211 arg1Of lysate,reticulocyte
R13640 T19212 T19213 arg2Of lysate,based
R13641 T19213 T19215 arg1Of based,vitro
R13642 T19215 T19214 arg1Of vitro,in
R13643 T19217 T19209 arg3Of system,in
R13644 T19217 T19216 arg1Of system,translational
R13645 T19217 T19218 arg1Of system,(
R13646 T19223 T19218 arg2Of Systems,(
R13647 T19223 T19219 arg1Of Systems,TNT®
R13648 T19223 T19220 arg1Of Systems,Quick
R13649 T19223 T19221 arg1Of Systems,Coupled
R13650 T19223 T19222 arg1Of Systems,Transcription/Translation
R13651 T19223 T19224 arg1Of Systems,","
R13652 T19223 T19225 arg1Of Systems,Promega
R13653 T19226 T19218 arg3Of ),(
R13654 T19228 T19227 arg1Of vector,A
R13655 T19228 T19229 arg1Of vector,without
R13656 T19228 T19234 arg1Of vector,was
R13657 T19228 T19236 arg2Of vector,translated
R13658 T19233 T19229 arg2Of sequence,without
R13659 T19233 T19230 arg1Of sequence,the
R13660 T19233 T19231 arg1Of sequence,Sox6
R13661 T19233 T19232 arg1Of sequence,coding
R13662 T19236 T19234 arg2Of translated,was
R13663 T19236 T19235 arg1Of translated,also
R13664 T19236 T19237 arg1Of translated,as
R13665 T19240 T19237 arg2Of control,as
R13666 T19240 T19238 arg1Of control,a
R13667 T19240 T19239 arg1Of control,negative

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T19138 458-462 Protein denotes Sox6
T19137 250-252 Protein denotes HA
T19136 240-245 Protein denotes c-Myc
T19135 183-187 Protein denotes Sox6
T19134 52-56 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T19243 458-462 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T19242 183-187 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T19241 52-56 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T19128 392-405 http://purl.obolibrary.org/obo/GO_0006351 denotes Transcription
T19127 488-498 http://purl.obolibrary.org/obo/GO_0006412 denotes translated
T19126 285-296 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T19125 197-208 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T19124 37-48 http://purl.obolibrary.org/obo/GO_0006412 denotes translation

GO-CC

Id Subject Object Predicate Lexical cue
T19139 98-103 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T19123 437-521 Sentence denotes A vector without the Sox6 coding sequence was also translated as a negative control.
T19122 281-436 Sentence denotes The translation was performed in a reticulocyte lysate based in vitro translational system (TNT® Quick Coupled Transcription/Translation Systems, Promega).
T19121 179-280 Sentence denotes The Sox6 in vitro translation expression vector, tagged with c-Myc and HA, was described before [15].
T19120 58-178 Sentence denotes Nuclear extracts were prepared from MEL cells (2 × 107) using a kit (Active Motif, Carlsbad, California, United States).
T19119 0-57 Sentence denotes Nuclear protein extract and in vitro translation of Sox6.
T307 0-57 Sentence denotes Nuclear protein extract and in vitro translation of Sox6.
T308 58-178 Sentence denotes Nuclear extracts were prepared from MEL cells (2 × 107) using a kit (Active Motif, Carlsbad, California, United States).
T309 179-280 Sentence denotes The Sox6 in vitro translation expression vector, tagged with c-Myc and HA, was described before [15].
T310 281-436 Sentence denotes The translation was performed in a reticulocyte lysate based in vitro translational system (TNT® Quick Coupled Transcription/Translation Systems, Promega).
T311 437-521 Sentence denotes A vector without the Sox6 coding sequence was also translated as a negative control.

simple1

Id Subject Object Predicate Lexical cue
T19149 458-462 Protein denotes Sox6
T19148 250-252 Protein denotes HA
T19147 240-245 Protein denotes c-Myc
T19146 183-187 Protein denotes Sox6
T19145 52-56 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T19384 209-219 Gene_expression denotes expression
T19383 458-462 Protein denotes Sox6
T19382 250-252 Protein denotes HA
T19381 240-245 Protein denotes c-Myc
T19380 183-187 Protein denotes Sox6
T19379 52-56 Protein denotes Sox6
R13771 T19380 T19384 themeOf Sox6,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T19249 209-219 Gene_expression denotes expression
T19248 458-462 Protein denotes Sox6
T19247 250-252 Protein denotes HA
T19246 240-245 Protein denotes c-Myc
T19245 183-187 Protein denotes Sox6
T19244 52-56 Protein denotes Sox6
R13668 T19245 T19249 themeOf Sox6,expression

DLUT931

Id Subject Object Predicate Lexical cue
T19260 209-219 Gene_expression denotes expression
T19259 458-462 Protein denotes Sox6
T19258 250-252 Protein denotes HA
T19257 240-245 Protein denotes c-Myc
T19256 183-187 Protein denotes Sox6
T19255 52-56 Protein denotes Sox6
R13669 T19256 T19260 themeOf Sox6,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T19378 28-56 Translation denotes in vitro translation of Sox6
T19377 316-328 Entity denotes reticulocyte
T19376 250-252 Protein denotes HA
T19375 58-74 Entity denotes Nuclear extracts
T19374 240-245 Protein denotes c-Myc
T19373 0-23 Protein denotes Nuclear protein extract
T19372 183-187 Protein denotes Sox6
T19371 49-56 Protein denotes of Sox6
T19370 0-23 Entity denotes Nuclear protein extract
T19369 458-462 Protein denotes Sox6
R13770 T19371 T19378 themeOf of Sox6,in vitro translation of Sox6

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T19273 37-48 NN denotes translation
T19272 31-36 NN denotes vitro
T19271 28-30 IN denotes in
T19270 24-27 CC denotes and
T19269 16-23 VB denotes extract
T19268 8-15 NN denotes protein
T19267 0-7 NNP denotes Nuclear
T19363 520-521 . denotes .
T19362 513-520 NN denotes control
T19361 504-512 JJ denotes negative
T19360 502-503 DT denotes a
T19359 499-501 IN denotes as
T19358 488-498 VBN denotes translated
T19357 483-487 RB denotes also
T19356 479-482 VBD denotes was
T19355 470-478 NN denotes sequence
T19354 463-469 NN denotes coding
T19353 458-462 JJ denotes Sox6
T19352 454-457 DT denotes the
T19351 446-453 IN denotes without
T19350 439-445 NN denotes vector
T19349 437-438 DT denotes A
T19348 435-436 . denotes .
T19347 434-435 -RRB- denotes )
T19346 427-434 NNP denotes Promega
T19345 425-426 , denotes ,
T19344 418-425 NNPS denotes Systems
T19343 392-417 NNP denotes Transcription/Translation
T19342 384-391 NNP denotes Coupled
T19341 378-383 NNP denotes Quick
T19340 376-377 CD denotes ®
T19339 373-376 NNP denotes TNT
T19338 372-373 -LRB- denotes (
T19337 365-371 NN denotes system
T19336 351-364 JJ denotes translational
T19335 345-350 NN denotes vitro
T19334 342-344 IN denotes in
T19333 336-341 VBN denotes based
T19332 329-335 NN denotes lysate
T19331 316-328 NN denotes reticulocyte
T19330 314-315 DT denotes a
T19329 311-313 IN denotes in
T19328 301-310 VBN denotes performed
T19327 297-300 VBD denotes was
T19314 240-245 JJ denotes c-Myc
T19313 235-239 IN denotes with
T19312 228-234 VBN denotes tagged
T19311 226-227 , denotes ,
T19310 220-226 NN denotes vector
T19309 209-219 NN denotes expression
T19308 197-208 NN denotes translation
T19307 191-196 NN denotes vitro
T19306 188-190 IN denotes in
T19305 183-187 NNP denotes Sox6
T19304 179-182 DT denotes The
T19303 177-178 . denotes .
T19302 176-177 -RRB- denotes )
T19301 170-176 NNPS denotes States
T19300 163-169 NNP denotes United
T19299 161-162 , denotes ,
T19298 151-161 NNP denotes California
T19297 149-150 , denotes ,
T19296 141-149 NNP denotes Carlsbad
T19295 139-140 , denotes ,
T19294 134-139 NN denotes Motif
T19293 127-133 JJ denotes Active
T19292 126-127 -LRB- denotes (
T19291 122-125 NN denotes kit
T19290 120-121 DT denotes a
T19289 114-119 VBG denotes using
T19288 112-113 -RRB- denotes )
T19287 109-112 CD denotes 107
T19286 107-108 CD denotes ×
T19285 105-106 CD denotes 2
T19284 104-105 -LRB- denotes (
T19283 98-103 NNS denotes cells
T19282 94-97 NNP denotes MEL
T19281 89-93 IN denotes from
T19280 80-88 VBN denotes prepared
T19279 75-79 VBD denotes were
T19278 66-74 NNS denotes extracts
T19277 58-65 NNP denotes Nuclear
T19276 56-57 . denotes .
T19275 52-56 NNP denotes Sox6
T19274 49-51 IN denotes of
T19326 285-296 NN denotes translation
T19325 281-284 DT denotes The
T19324 279-280 . denotes .
T19323 278-279 NNP denotes ]
T19322 276-278 CD denotes 15
T19321 275-276 NNP denotes [
T19320 268-274 IN denotes before
T19319 258-267 VBN denotes described
T19318 254-257 VBD denotes was
T19317 252-253 , denotes ,
T19316 250-252 NNP denotes HA
T19315 246-249 CC denotes and
R13673 T19267 T19268 compound Nuclear,protein
R13674 T19268 T19269 nsubj protein,extract
R13675 T19269 T19269 ROOT extract,extract
R13676 T19270 T19269 cc and,extract
R13677 T19271 T19269 prep in,extract
R13678 T19272 T19273 amod vitro,translation
R13679 T19273 T19271 pobj translation,in
R13680 T19274 T19273 prep of,translation
R13681 T19275 T19274 pobj Sox6,of
R13682 T19276 T19269 punct .,extract
R13683 T19277 T19278 compound Nuclear,extracts
R13684 T19278 T19280 nsubjpass extracts,prepared
R13685 T19279 T19280 auxpass were,prepared
R13686 T19280 T19280 ROOT prepared,prepared
R13687 T19281 T19280 prep from,prepared
R13688 T19282 T19283 compound MEL,cells
R13689 T19283 T19281 pobj cells,from
R13690 T19284 T19283 punct (,cells
R13691 T19285 T19286 nummod 2,×
R13692 T19286 T19287 nummod ×,107
R13693 T19287 T19283 appos 107,cells
R13694 T19288 T19283 punct ),cells
R13695 T19289 T19280 advcl using,prepared
R13696 T19290 T19291 det a,kit
R13697 T19291 T19289 dobj kit,using
R13698 T19292 T19291 punct (,kit
R13699 T19293 T19294 amod Active,Motif
R13700 T19294 T19291 appos Motif,kit
R13701 T19295 T19294 punct ",",Motif
R13702 T19296 T19294 conj Carlsbad,Motif
R13703 T19297 T19296 punct ",",Carlsbad
R13704 T19298 T19296 conj California,Carlsbad
R13705 T19299 T19298 punct ",",California
R13706 T19300 T19301 compound United,States
R13707 T19301 T19298 conj States,California
R13708 T19302 T19296 punct ),Carlsbad
R13709 T19303 T19280 punct .,prepared
R13710 T19304 T19305 det The,Sox6
R13711 T19305 T19312 nsubjpass Sox6,tagged
R13712 T19306 T19312 prep in,tagged
R13713 T19307 T19309 amod vitro,expression
R13714 T19308 T19309 compound translation,expression
R13715 T19309 T19310 compound expression,vector
R13716 T19310 T19306 pobj vector,in
R13717 T19311 T19312 punct ",",tagged
R13718 T19312 T19312 ROOT tagged,tagged
R13719 T19313 T19312 prep with,tagged
R13720 T19314 T19313 pobj c-Myc,with
R13721 T19315 T19314 cc and,c-Myc
R13722 T19316 T19314 conj HA,c-Myc
R13723 T19317 T19319 punct ",",described
R13724 T19318 T19319 auxpass was,described
R13725 T19319 T19312 conj described,tagged
R13726 T19320 T19319 prep before,described
R13727 T19321 T19323 nmod [,]
R13728 T19322 T19321 nummod 15,[
R13729 T19323 T19320 pobj ],before
R13730 T19324 T19319 punct .,described
R13731 T19325 T19326 det The,translation
R13732 T19326 T19328 nsubjpass translation,performed
R13733 T19327 T19328 auxpass was,performed
R13734 T19328 T19328 ROOT performed,performed
R13735 T19329 T19328 prep in,performed
R13736 T19330 T19332 det a,lysate
R13737 T19331 T19332 amod reticulocyte,lysate
R13738 T19332 T19329 pobj lysate,in
R13739 T19333 T19332 acl based,lysate
R13740 T19334 T19333 prep in,based
R13741 T19335 T19337 amod vitro,system
R13742 T19336 T19337 amod translational,system
R13743 T19337 T19334 pobj system,in
R13744 T19338 T19337 punct (,system
R13745 T19339 T19344 nmod TNT,Systems
R13746 T19340 T19339 nummod ®,TNT
R13747 T19341 T19344 compound Quick,Systems
R13748 T19342 T19344 compound Coupled,Systems
R13749 T19343 T19344 compound Transcription/Translation,Systems
R13750 T19344 T19337 appos Systems,system
R13751 T19345 T19344 punct ",",Systems
R13752 T19346 T19344 appos Promega,Systems
R13753 T19347 T19337 punct ),system
R13754 T19348 T19328 punct .,performed
R13755 T19349 T19350 det A,vector
R13756 T19350 T19358 nsubjpass vector,translated
R13757 T19351 T19350 prep without,vector
R13758 T19352 T19355 det the,sequence
R13759 T19353 T19355 amod Sox6,sequence
R13760 T19354 T19355 compound coding,sequence
R13761 T19355 T19351 pobj sequence,without
R13762 T19356 T19358 auxpass was,translated
R13763 T19357 T19358 advmod also,translated
R13764 T19358 T19358 ROOT translated,translated
R13765 T19359 T19358 prep as,translated
R13766 T19360 T19362 det a,control
R13767 T19361 T19362 amod negative,control
R13768 T19362 T19359 pobj control,as
R13769 T19363 T19358 punct .,translated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T19254 458-478 Protein denotes Sox6 coding sequence
T19253 250-252 Protein denotes HA
T19252 240-245 Protein denotes c-Myc
T19251 183-187 Protein denotes Sox6
T19250 52-56 Protein denotes Sox6

testone

Id Subject Object Predicate Lexical cue
T19108 458-462 Protein denotes Sox6
T19107 250-252 Protein denotes HA
T19106 240-245 Protein denotes c-Myc
T19105 183-187 Protein denotes Sox6
T19104 52-56 Protein denotes Sox6

test3

Id Subject Object Predicate Lexical cue
T19118 458-462 Protein denotes Sox6
T19117 250-252 Protein denotes HA
T19116 240-245 Protein denotes c-Myc
T19115 183-187 Protein denotes Sox6
T19114 52-56 Protein denotes Sox6
T19113 458-462 Protein denotes Sox6
T19112 250-252 Protein denotes HA
T19111 240-245 Protein denotes c-Myc
T19110 183-187 Protein denotes Sox6
T19109 52-56 Protein denotes Sox6
R13575 T19116 T19115 themeOf c-Myc,Sox6
R13576 T19117 T19115 themeOf HA,Sox6