PMC:1359074 / 3802-4032 JSONTXT

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    2_test

    {"project":"2_test","denotations":[{"id":"16462943-11818535-85760958","span":{"begin":227,"end":228},"obj":"11818535"},{"id":"T40137","span":{"begin":227,"end":228},"obj":"11818535"}],"text":"Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    pmc-enju-pas

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of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T1422","span":{"begin":139,"end":142},"obj":"Protein"},{"id":"T1421","span":{"begin":130,"end":134},"obj":"Protein"},{"id":"T1420","span":{"begin":124,"end":128},"obj":"Protein"},{"id":"T1419","span":{"begin":13,"end":17},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T1246","span":{"begin":168,"end":176},"obj":"http://purl.obolibrary.org/obo/GO_0045292"},{"id":"T1245","span":{"begin":48,"end":56},"obj":"http://purl.obolibrary.org/obo/GO_0045292"}],"text":"Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T1491","span":{"begin":26,"end":30},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    sentences

    {"project":"sentences","denotations":[{"id":"T1205","span":{"begin":0,"end":230},"obj":"Sentence"},{"id":"T25","span":{"begin":0,"end":230},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    simple1

    {"project":"simple1","denotations":[{"id":"T1649","span":{"begin":139,"end":142},"obj":"Protein"},{"id":"T1648","span":{"begin":130,"end":134},"obj":"Protein"},{"id":"T1647","span":{"begin":124,"end":128},"obj":"Protein"},{"id":"T1646","span":{"begin":13,"end":17},"obj":"Protein"}],"text":"Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T4276","span":{"begin":85,"end":95},"obj":"Gene_expression"},{"id":"T4275","span":{"begin":159,"end":167},"obj":"Positive_regulation"},{"id":"T4274","span":{"begin":0,"end":9},"obj":"Negative_regulation"},{"id":"T4227","span":{"begin":139,"end":142},"obj":"Protein"},{"id":"T4226","span":{"begin":130,"end":134},"obj":"Protein"},{"id":"T4225","span":{"begin":124,"end":128},"obj":"Protein"},{"id":"T4224","span":{"begin":13,"end":17},"obj":"Protein"}],"relations":[{"id":"R3021","pred":"themeOf","subj":"T4224","obj":"T4274"},{"id":"R3025","pred":"themeOf","subj":"T4225","obj":"T4276"},{"id":"R3026","pred":"themeOf","subj":"T4226","obj":"T4276"},{"id":"R3027","pred":"themeOf","subj":"T4227","obj":"T4276"},{"id":"R3059","pred":"themeOf","subj":"T4276","obj":"T4275"},{"id":"R3060","pred":"themeOf","subj":"T4276","obj":"T4275"},{"id":"R3061","pred":"themeOf","subj":"T4276","obj":"T4275"}],"text":"Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T2740","span":{"begin":0,"end":9},"obj":"Negative_regulation"},{"id":"T2739","span":{"begin":159,"end":167},"obj":"Positive_regulation"},{"id":"T2738","span":{"begin":85,"end":95},"obj":"Gene_expression"},{"id":"T2691","span":{"begin":139,"end":142},"obj":"Protein"},{"id":"T2690","span":{"begin":130,"end":134},"obj":"Protein"},{"id":"T2689","span":{"begin":124,"end":128},"obj":"Protein"},{"id":"T2688","span":{"begin":13,"end":17},"obj":"Protein"}],"relations":[{"id":"R1774","pred":"themeOf","subj":"T2688","obj":"T2740"},{"id":"R1775","pred":"themeOf","subj":"T2689","obj":"T2738"},{"id":"R1780","pred":"themeOf","subj":"T2690","obj":"T2738"},{"id":"R1782","pred":"themeOf","subj":"T2691","obj":"T2738"},{"id":"R1849","pred":"themeOf","subj":"T2738","obj":"T2739"},{"id":"R1851","pred":"themeOf","subj":"T2738","obj":"T2739"},{"id":"R1852","pred":"themeOf","subj":"T2738","obj":"T2739"}],"text":"Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T2818","span":{"begin":85,"end":95},"obj":"Gene_expression"},{"id":"T2817","span":{"begin":0,"end":9},"obj":"Negative_regulation"},{"id":"T2769","span":{"begin":139,"end":142},"obj":"Protein"},{"id":"T2768","span":{"begin":130,"end":134},"obj":"Protein"},{"id":"T2767","span":{"begin":124,"end":128},"obj":"Protein"},{"id":"T2766","span":{"begin":13,"end":17},"obj":"Protein"}],"relations":[{"id":"R1850","pred":"themeOf","subj":"T2768","obj":"T2818"},{"id":"R1853","pred":"themeOf","subj":"T2769","obj":"T2818"},{"id":"R1846","pred":"themeOf","subj":"T2766","obj":"T2817"},{"id":"R1848","pred":"themeOf","subj":"T2767","obj":"T2818"}],"text":"Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T4117","span":{"begin":96,"end":113},"obj":"Entity"},{"id":"T4115","span":{"begin":130,"end":134},"obj":"Protein"},{"id":"T4088","span":{"begin":139,"end":142},"obj":"Protein"},{"id":"T4066","span":{"begin":208,"end":229},"obj":"Protein"},{"id":"T4065","span":{"begin":146,"end":158},"obj":"Entity"},{"id":"T4055","span":{"begin":57,"end":79},"obj":"Entity"},{"id":"T4219","span":{"begin":139,"end":176},"obj":"Binding"},{"id":"T4187","span":{"begin":10,"end":17},"obj":"Protein"},{"id":"T4176","span":{"begin":21,"end":39},"obj":"Entity"},{"id":"T4160","span":{"begin":124,"end":135},"obj":"Protein"}],"relations":[{"id":"R3013","pred":"themeOf","subj":"T4088","obj":"T4219"}],"text":"Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    bionlp-st-ge-2016-spacy-parsed

    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of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T1520","span":{"begin":85,"end":95},"obj":"Gene_expression"},{"id":"T1519","span":{"begin":85,"end":95},"obj":"Gene_expression"},{"id":"T1518","span":{"begin":85,"end":95},"obj":"Gene_expression"},{"id":"T1517","span":{"begin":85,"end":95},"obj":"Gene_expression"},{"id":"T1516","span":{"begin":0,"end":9},"obj":"Localization"},{"id":"T1515","span":{"begin":139,"end":142},"obj":"Protein"},{"id":"T1514","span":{"begin":130,"end":134},"obj":"Protein"},{"id":"T1513","span":{"begin":124,"end":128},"obj":"Protein"},{"id":"T1512","span":{"begin":103,"end":113},"obj":"Protein"},{"id":"T1511","span":{"begin":13,"end":17},"obj":"Protein"}],"relations":[{"id":"R759","pred":"themeOf","subj":"T1511","obj":"T1516"},{"id":"R760","pred":"themeOf","subj":"T1512","obj":"T1517"},{"id":"R761","pred":"themeOf","subj":"T1513","obj":"T1518"},{"id":"R762","pred":"themeOf","subj":"T1514","obj":"T1519"},{"id":"R763","pred":"themeOf","subj":"T1515","obj":"T1520"}],"text":"Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    testone

    {"project":"testone","denotations":[{"id":"T1034","span":{"begin":85,"end":95},"obj":"Gene_expression"},{"id":"T985","span":{"begin":139,"end":142},"obj":"Protein"},{"id":"T984","span":{"begin":130,"end":134},"obj":"Protein"},{"id":"T983","span":{"begin":124,"end":128},"obj":"Protein"},{"id":"T982","span":{"begin":13,"end":17},"obj":"Protein"}],"relations":[{"id":"R599","pred":"themeOf","subj":"T983","obj":"T1034"},{"id":"R600","pred":"themeOf","subj":"T984","obj":"T1034"},{"id":"R601","pred":"themeOf","subj":"T985","obj":"T1034"}],"text":"Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}

    test3

    {"project":"test3","denotations":[{"id":"T1130","span":{"begin":139,"end":142},"obj":"Protein"},{"id":"T1129","span":{"begin":130,"end":134},"obj":"Protein"},{"id":"T1128","span":{"begin":124,"end":128},"obj":"Protein"},{"id":"T1127","span":{"begin":107,"end":113},"obj":"Entity"},{"id":"T1126","span":{"begin":85,"end":95},"obj":"Gene_expression"},{"id":"T1125","span":{"begin":13,"end":17},"obj":"Protein"},{"id":"T1073","span":{"begin":139,"end":142},"obj":"Protein"},{"id":"T1072","span":{"begin":130,"end":134},"obj":"Protein"},{"id":"T1071","span":{"begin":124,"end":128},"obj":"Protein"},{"id":"T1070","span":{"begin":13,"end":17},"obj":"Protein"}],"relations":[{"id":"R639","pred":"themeOf","subj":"T1128","obj":"T1126"},{"id":"R640","pred":"themeOf","subj":"T1129","obj":"T1126"},{"id":"R641","pred":"themeOf","subj":"T1130","obj":"T1126"}],"text":"Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]."}