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PMC:1359074 / 3802-4032 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-11818535-85760958 227-228 11818535 denotes 7
T40137 227-228 11818535 denotes 7

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1904 228-229 -RRB- denotes ]
T1903 227-228 CD denotes 7
T1902 226-227 -LRB- denotes [
T1901 217-225 NN denotes proteins
T1900 211-216 DT denotes these
T1899 208-210 IN denotes of
T1898 200-207 NN denotes overlap
T1897 189-199 JJ denotes functional
T1896 178-188 VB denotes indicating
T1895 176-177 -COMMA- denotes ,
T1894 168-176 NN denotes splicing
T1893 159-167 VB denotes restored
T1892 150-158 NN denotes extracts
T1891 146-149 DT denotes the
T1890 143-145 IN denotes in
T1889 139-142 NN denotes Sry
T1888 136-138 CC denotes or
T1887 134-135 -COMMA- denotes ,
T1886 130-134 NN denotes Sox9
T1885 128-129 -COMMA- denotes ,
T1884 124-128 NN denotes Sox6
T1883 117-123 DT denotes either
T1882 114-116 IN denotes of
T1881 107-113 NN denotes domain
T1880 103-106 NN denotes HMG
T1879 99-102 DT denotes the
T1878 96-98 IN denotes of
T1877 85-95 NN denotes expression
T1876 81-84 CC denotes and
T1875 79-80 -COMMA- denotes ,
T1874 69-79 NN denotes substrates
T1873 60-68 JJ denotes multiple
T1872 57-59 IN denotes of
T1871 48-56 NN denotes splicing
T1870 40-47 VB denotes blocked
T1869 31-39 NN denotes extracts
T1868 26-30 NN denotes cell
T1867 21-25 NN denotes HeLa
T1866 18-20 IN denotes in
T1865 13-17 NN denotes Sox6
T1864 10-12 IN denotes of
T1863 0-9 NN denotes Depletion
R977 T1863 T1864 arg1Of Depletion,of
R978 T1863 T1866 arg1Of Depletion,in
R979 T1863 T1870 arg1Of Depletion,blocked
R980 T1865 T1864 arg2Of Sox6,of
R981 T1869 T1866 arg2Of extracts,in
R982 T1869 T1867 arg1Of extracts,HeLa
R983 T1869 T1868 arg1Of extracts,cell
R984 T1870 T1876 arg1Of blocked,and
R985 T1871 T1870 arg2Of splicing,blocked
R986 T1871 T1872 arg1Of splicing,of
R987 T1874 T1872 arg2Of substrates,of
R988 T1874 T1873 arg1Of substrates,multiple
R989 T1876 T1875 arg1Of and,","
R990 T1876 T1896 modOf and,indicating
R991 T1876 T1902 arg1Of and,[
R992 T1877 T1878 arg1Of expression,of
R993 T1877 T1893 arg1Of expression,restored
R994 T1881 T1878 arg2Of domain,of
R995 T1881 T1879 arg1Of domain,the
R996 T1881 T1880 arg1Of domain,HMG
R997 T1881 T1882 arg1Of domain,of
R998 T1881 T1890 arg1Of domain,in
R999 T1884 T1885 arg1Of Sox6,","
R1000 T1885 T1888 arg1Of ",",or
R1001 T1886 T1885 arg2Of Sox9,","
R1002 T1888 T1882 arg2Of or,of
R1003 T1888 T1883 arg1Of or,either
R1004 T1888 T1887 arg1Of or,","
R1005 T1889 T1888 arg2Of Sry,or
R1006 T1892 T1890 arg2Of extracts,in
R1007 T1892 T1891 arg1Of extracts,the
R1008 T1893 T1876 arg2Of restored,and
R1009 T1893 T1895 arg1Of restored,","
R1010 T1894 T1893 arg2Of splicing,restored
R1011 T1898 T1896 arg2Of overlap,indicating
R1012 T1898 T1897 arg1Of overlap,functional
R1013 T1898 T1899 arg1Of overlap,of
R1014 T1901 T1899 arg2Of proteins,of
R1015 T1901 T1900 arg1Of proteins,these
R1016 T1903 T1902 arg2Of 7,[
R1017 T1904 T1902 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1422 139-142 Protein denotes Sry
T1421 130-134 Protein denotes Sox9
T1420 124-128 Protein denotes Sox6
T1419 13-17 Protein denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T1246 168-176 http://purl.obolibrary.org/obo/GO_0045292 denotes splicing
T1245 48-56 http://purl.obolibrary.org/obo/GO_0045292 denotes splicing

GO-CC

Id Subject Object Predicate Lexical cue
T1491 26-30 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T1205 0-230 Sentence denotes Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7].
T25 0-230 Sentence denotes Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7].

simple1

Id Subject Object Predicate Lexical cue
T1649 139-142 Protein denotes Sry
T1648 130-134 Protein denotes Sox9
T1647 124-128 Protein denotes Sox6
T1646 13-17 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4276 85-95 Gene_expression denotes expression
T4275 159-167 Positive_regulation denotes restored
T4274 0-9 Negative_regulation denotes Depletion
T4227 139-142 Protein denotes Sry
T4226 130-134 Protein denotes Sox9
T4225 124-128 Protein denotes Sox6
T4224 13-17 Protein denotes Sox6
R3021 T4224 T4274 themeOf Sox6,Depletion
R3025 T4225 T4276 themeOf Sox6,expression
R3026 T4226 T4276 themeOf Sox9,expression
R3027 T4227 T4276 themeOf Sry,expression
R3059 T4276 T4275 themeOf expression,restored
R3060 T4276 T4275 themeOf expression,restored
R3061 T4276 T4275 themeOf expression,restored

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2740 0-9 Negative_regulation denotes Depletion
T2739 159-167 Positive_regulation denotes restored
T2738 85-95 Gene_expression denotes expression
T2691 139-142 Protein denotes Sry
T2690 130-134 Protein denotes Sox9
T2689 124-128 Protein denotes Sox6
T2688 13-17 Protein denotes Sox6
R1774 T2688 T2740 themeOf Sox6,Depletion
R1775 T2689 T2738 themeOf Sox6,expression
R1780 T2690 T2738 themeOf Sox9,expression
R1782 T2691 T2738 themeOf Sry,expression
R1849 T2738 T2739 themeOf expression,restored
R1851 T2738 T2739 themeOf expression,restored
R1852 T2738 T2739 themeOf expression,restored

DLUT931

Id Subject Object Predicate Lexical cue
T2818 85-95 Gene_expression denotes expression
T2817 0-9 Negative_regulation denotes Depletion
T2769 139-142 Protein denotes Sry
T2768 130-134 Protein denotes Sox9
T2767 124-128 Protein denotes Sox6
T2766 13-17 Protein denotes Sox6
R1850 T2768 T2818 themeOf Sox9,expression
R1853 T2769 T2818 themeOf Sry,expression
R1846 T2766 T2817 themeOf Sox6,Depletion
R1848 T2767 T2818 themeOf Sox6,expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4117 96-113 Entity denotes of the HMG domain
T4115 130-134 Protein denotes Sox9
T4088 139-142 Protein denotes Sry
T4066 208-229 Protein denotes of these proteins [7]
T4065 146-158 Entity denotes the extracts
T4055 57-79 Entity denotes of multiple substrates
T4219 139-176 Binding denotes Sry in the extracts restored splicing
T4187 10-17 Protein denotes of Sox6
T4176 21-39 Entity denotes HeLa cell extracts
T4160 124-135 Protein denotes Sox6, Sox9,
R3013 T4088 T4219 themeOf Sry,Sry in the extracts restored splicing

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3130 229-230 . denotes .
T3129 228-229 NNP denotes ]
T3128 227-228 CD denotes 7
T3127 226-227 VBP denotes [
T3126 217-225 NNS denotes proteins
T3125 211-216 DT denotes these
T3124 208-210 IN denotes of
T3123 200-207 VBP denotes overlap
T3122 189-199 JJ denotes functional
T3121 178-188 VBG denotes indicating
T3120 176-177 , denotes ,
T3119 168-176 NN denotes splicing
T3118 159-167 VBD denotes restored
T3117 150-158 NNS denotes extracts
T3116 146-149 DT denotes the
T3115 143-145 IN denotes in
T3114 139-142 NNP denotes Sry
T3113 136-138 CC denotes or
T3112 134-135 , denotes ,
T3111 130-134 NNP denotes Sox9
T3110 128-129 , denotes ,
T3109 124-128 NNP denotes Sox6
T3108 117-123 DT denotes either
T3107 114-116 IN denotes of
T3106 107-113 NN denotes domain
T3105 103-106 NNP denotes HMG
T3104 99-102 DT denotes the
T3103 96-98 IN denotes of
T3102 85-95 NN denotes expression
T3101 81-84 CC denotes and
T3100 79-80 , denotes ,
T3099 69-79 NNS denotes substrates
T3098 60-68 JJ denotes multiple
T3097 57-59 IN denotes of
T3096 48-56 NN denotes splicing
T3095 40-47 VBN denotes blocked
T3094 31-39 VBZ denotes extracts
T3093 26-30 NN denotes cell
T3092 21-25 NNP denotes HeLa
T3091 18-20 IN denotes in
T3090 13-17 NNP denotes Sox6
T3089 10-12 IN denotes of
T3088 0-9 NN denotes Depletion
R2061 T3120 T3118 punct ",",restored
R2063 T3121 T3118 advcl indicating,restored
R2064 T3122 T3123 amod functional,overlap
R2065 T3123 T3121 dobj overlap,indicating
R2066 T3124 T3123 prep of,overlap
R2067 T3125 T3126 det these,proteins
R2069 T3126 T3124 pobj proteins,of
R2070 T3127 T3123 conj [,overlap
R2071 T3128 T3129 nummod 7,]
R2073 T3129 T3127 dobj ],[
R2074 T3130 T3118 punct .,restored
R2187 T3088 T3095 nsubj Depletion,blocked
R2190 T3089 T3088 prep of,Depletion
R2191 T3090 T3089 pobj Sox6,of
R2192 T3091 T3090 prep in,Sox6
R2196 T3092 T3093 compound HeLa,cell
R2199 T3093 T3094 compound cell,extracts
R2203 T3094 T3095 nsubj extracts,blocked
R2207 T3095 T3095 ROOT blocked,blocked
R2210 T3096 T3095 dobj splicing,blocked
R2217 T3097 T3096 prep of,splicing
R2221 T3098 T3099 amod multiple,substrates
R2225 T3099 T3097 pobj substrates,of
R2229 T3100 T3095 punct ",",blocked
R2233 T3101 T3095 cc and,blocked
R2237 T3102 T3095 conj expression,blocked
R2240 T3103 T3102 prep of,expression
R2244 T3104 T3106 det the,domain
R2247 T3105 T3106 compound HMG,domain
R2252 T3106 T3103 pobj domain,of
R2255 T3107 T3106 prep of,domain
R2259 T3108 T3118 preconj either,restored
R2262 T3109 T3118 nsubj Sox6,restored
R2264 T3110 T3109 punct ",",Sox6
R2270 T3111 T3109 conj Sox9,Sox6
R2273 T3112 T3111 punct ",",Sox9
R2278 T3113 T3111 cc or,Sox9
R2282 T3114 T3111 conj Sry,Sox9
R2286 T3115 T3109 prep in,Sox6
R2290 T3116 T3117 det the,extracts
R2294 T3117 T3115 pobj extracts,in
R2298 T3118 T3095 conj restored,blocked
R2302 T3119 T3118 dobj splicing,restored

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1520 85-95 Gene_expression denotes expression
T1519 85-95 Gene_expression denotes expression
T1518 85-95 Gene_expression denotes expression
T1517 85-95 Gene_expression denotes expression
T1516 0-9 Localization denotes Depletion
T1515 139-142 Protein denotes Sry
T1514 130-134 Protein denotes Sox9
T1513 124-128 Protein denotes Sox6
T1512 103-113 Protein denotes HMG domain
T1511 13-17 Protein denotes Sox6
R759 T1511 T1516 themeOf Sox6,Depletion
R760 T1512 T1517 themeOf HMG domain,expression
R761 T1513 T1518 themeOf Sox6,expression
R762 T1514 T1519 themeOf Sox9,expression
R763 T1515 T1520 themeOf Sry,expression

testone

Id Subject Object Predicate Lexical cue
T1034 85-95 Gene_expression denotes expression
T985 139-142 Protein denotes Sry
T984 130-134 Protein denotes Sox9
T983 124-128 Protein denotes Sox6
T982 13-17 Protein denotes Sox6
R599 T983 T1034 themeOf Sox6,expression
R600 T984 T1034 themeOf Sox9,expression
R601 T985 T1034 themeOf Sry,expression

test3

Id Subject Object Predicate Lexical cue
T1130 139-142 Protein denotes Sry
T1129 130-134 Protein denotes Sox9
T1128 124-128 Protein denotes Sox6
T1127 107-113 Entity denotes domain
T1126 85-95 Gene_expression denotes expression
T1125 13-17 Protein denotes Sox6
T1073 139-142 Protein denotes Sry
T1072 130-134 Protein denotes Sox9
T1071 124-128 Protein denotes Sox6
T1070 13-17 Protein denotes Sox6
R639 T1128 T1126 themeOf Sox6,expression
R640 T1129 T1126 themeOf Sox9,expression
R641 T1130 T1126 themeOf Sry,expression