PMC:1359074 / 3802-4032
Annnotations
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
16462943-11818535-85760958 | 227-228 | 11818535 | denotes | 7 |
T40137 | 227-228 | 11818535 | denotes | 7 |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1904 | 228-229 | -RRB- | denotes | ] |
T1903 | 227-228 | CD | denotes | 7 |
T1902 | 226-227 | -LRB- | denotes | [ |
T1901 | 217-225 | NN | denotes | proteins |
T1900 | 211-216 | DT | denotes | these |
T1899 | 208-210 | IN | denotes | of |
T1898 | 200-207 | NN | denotes | overlap |
T1897 | 189-199 | JJ | denotes | functional |
T1896 | 178-188 | VB | denotes | indicating |
T1895 | 176-177 | -COMMA- | denotes | , |
T1894 | 168-176 | NN | denotes | splicing |
T1893 | 159-167 | VB | denotes | restored |
T1892 | 150-158 | NN | denotes | extracts |
T1891 | 146-149 | DT | denotes | the |
T1890 | 143-145 | IN | denotes | in |
T1889 | 139-142 | NN | denotes | Sry |
T1888 | 136-138 | CC | denotes | or |
T1887 | 134-135 | -COMMA- | denotes | , |
T1886 | 130-134 | NN | denotes | Sox9 |
T1885 | 128-129 | -COMMA- | denotes | , |
T1884 | 124-128 | NN | denotes | Sox6 |
T1883 | 117-123 | DT | denotes | either |
T1882 | 114-116 | IN | denotes | of |
T1881 | 107-113 | NN | denotes | domain |
T1880 | 103-106 | NN | denotes | HMG |
T1879 | 99-102 | DT | denotes | the |
T1878 | 96-98 | IN | denotes | of |
T1877 | 85-95 | NN | denotes | expression |
T1876 | 81-84 | CC | denotes | and |
T1875 | 79-80 | -COMMA- | denotes | , |
T1874 | 69-79 | NN | denotes | substrates |
T1873 | 60-68 | JJ | denotes | multiple |
T1872 | 57-59 | IN | denotes | of |
T1871 | 48-56 | NN | denotes | splicing |
T1870 | 40-47 | VB | denotes | blocked |
T1869 | 31-39 | NN | denotes | extracts |
T1868 | 26-30 | NN | denotes | cell |
T1867 | 21-25 | NN | denotes | HeLa |
T1866 | 18-20 | IN | denotes | in |
T1865 | 13-17 | NN | denotes | Sox6 |
T1864 | 10-12 | IN | denotes | of |
T1863 | 0-9 | NN | denotes | Depletion |
R977 | T1863 | T1864 | arg1Of | Depletion,of |
R978 | T1863 | T1866 | arg1Of | Depletion,in |
R979 | T1863 | T1870 | arg1Of | Depletion,blocked |
R980 | T1865 | T1864 | arg2Of | Sox6,of |
R981 | T1869 | T1866 | arg2Of | extracts,in |
R982 | T1869 | T1867 | arg1Of | extracts,HeLa |
R983 | T1869 | T1868 | arg1Of | extracts,cell |
R984 | T1870 | T1876 | arg1Of | blocked,and |
R985 | T1871 | T1870 | arg2Of | splicing,blocked |
R986 | T1871 | T1872 | arg1Of | splicing,of |
R987 | T1874 | T1872 | arg2Of | substrates,of |
R988 | T1874 | T1873 | arg1Of | substrates,multiple |
R989 | T1876 | T1875 | arg1Of | and,"," |
R990 | T1876 | T1896 | modOf | and,indicating |
R991 | T1876 | T1902 | arg1Of | and,[ |
R992 | T1877 | T1878 | arg1Of | expression,of |
R993 | T1877 | T1893 | arg1Of | expression,restored |
R994 | T1881 | T1878 | arg2Of | domain,of |
R995 | T1881 | T1879 | arg1Of | domain,the |
R996 | T1881 | T1880 | arg1Of | domain,HMG |
R997 | T1881 | T1882 | arg1Of | domain,of |
R998 | T1881 | T1890 | arg1Of | domain,in |
R999 | T1884 | T1885 | arg1Of | Sox6,"," |
R1000 | T1885 | T1888 | arg1Of | ",",or |
R1001 | T1886 | T1885 | arg2Of | Sox9,"," |
R1002 | T1888 | T1882 | arg2Of | or,of |
R1003 | T1888 | T1883 | arg1Of | or,either |
R1004 | T1888 | T1887 | arg1Of | or,"," |
R1005 | T1889 | T1888 | arg2Of | Sry,or |
R1006 | T1892 | T1890 | arg2Of | extracts,in |
R1007 | T1892 | T1891 | arg1Of | extracts,the |
R1008 | T1893 | T1876 | arg2Of | restored,and |
R1009 | T1893 | T1895 | arg1Of | restored,"," |
R1010 | T1894 | T1893 | arg2Of | splicing,restored |
R1011 | T1898 | T1896 | arg2Of | overlap,indicating |
R1012 | T1898 | T1897 | arg1Of | overlap,functional |
R1013 | T1898 | T1899 | arg1Of | overlap,of |
R1014 | T1901 | T1899 | arg2Of | proteins,of |
R1015 | T1901 | T1900 | arg1Of | proteins,these |
R1016 | T1903 | T1902 | arg2Of | 7,[ |
R1017 | T1904 | T1902 | arg3Of | ],[ |
bionlp-st-ge-2016-test-proteins
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1422 | 139-142 | Protein | denotes | Sry |
T1421 | 130-134 | Protein | denotes | Sox9 |
T1420 | 124-128 | Protein | denotes | Sox6 |
T1419 | 13-17 | Protein | denotes | Sox6 |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1246 | 168-176 | http://purl.obolibrary.org/obo/GO_0045292 | denotes | splicing |
T1245 | 48-56 | http://purl.obolibrary.org/obo/GO_0045292 | denotes | splicing |
GO-CC
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1491 | 26-30 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1205 | 0-230 | Sentence | denotes | Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]. |
T25 | 0-230 | Sentence | denotes | Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7]. |
simple1
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1649 | 139-142 | Protein | denotes | Sry |
T1648 | 130-134 | Protein | denotes | Sox9 |
T1647 | 124-128 | Protein | denotes | Sox6 |
T1646 | 13-17 | Protein | denotes | Sox6 |
BioNLP16_DUT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4276 | 85-95 | Gene_expression | denotes | expression |
T4275 | 159-167 | Positive_regulation | denotes | restored |
T4274 | 0-9 | Negative_regulation | denotes | Depletion |
T4227 | 139-142 | Protein | denotes | Sry |
T4226 | 130-134 | Protein | denotes | Sox9 |
T4225 | 124-128 | Protein | denotes | Sox6 |
T4224 | 13-17 | Protein | denotes | Sox6 |
R3021 | T4224 | T4274 | themeOf | Sox6,Depletion |
R3025 | T4225 | T4276 | themeOf | Sox6,expression |
R3026 | T4226 | T4276 | themeOf | Sox9,expression |
R3027 | T4227 | T4276 | themeOf | Sry,expression |
R3059 | T4276 | T4275 | themeOf | expression,restored |
R3060 | T4276 | T4275 | themeOf | expression,restored |
R3061 | T4276 | T4275 | themeOf | expression,restored |
BioNLP16_Messiy
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2740 | 0-9 | Negative_regulation | denotes | Depletion |
T2739 | 159-167 | Positive_regulation | denotes | restored |
T2738 | 85-95 | Gene_expression | denotes | expression |
T2691 | 139-142 | Protein | denotes | Sry |
T2690 | 130-134 | Protein | denotes | Sox9 |
T2689 | 124-128 | Protein | denotes | Sox6 |
T2688 | 13-17 | Protein | denotes | Sox6 |
R1774 | T2688 | T2740 | themeOf | Sox6,Depletion |
R1775 | T2689 | T2738 | themeOf | Sox6,expression |
R1780 | T2690 | T2738 | themeOf | Sox9,expression |
R1782 | T2691 | T2738 | themeOf | Sry,expression |
R1849 | T2738 | T2739 | themeOf | expression,restored |
R1851 | T2738 | T2739 | themeOf | expression,restored |
R1852 | T2738 | T2739 | themeOf | expression,restored |
DLUT931
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2818 | 85-95 | Gene_expression | denotes | expression |
T2817 | 0-9 | Negative_regulation | denotes | Depletion |
T2769 | 139-142 | Protein | denotes | Sry |
T2768 | 130-134 | Protein | denotes | Sox9 |
T2767 | 124-128 | Protein | denotes | Sox6 |
T2766 | 13-17 | Protein | denotes | Sox6 |
R1850 | T2768 | T2818 | themeOf | Sox9,expression |
R1853 | T2769 | T2818 | themeOf | Sry,expression |
R1846 | T2766 | T2817 | themeOf | Sox6,Depletion |
R1848 | T2767 | T2818 | themeOf | Sox6,expression |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T4117 | 96-113 | Entity | denotes | of the HMG domain |
T4115 | 130-134 | Protein | denotes | Sox9 |
T4088 | 139-142 | Protein | denotes | Sry |
T4066 | 208-229 | Protein | denotes | of these proteins [7] |
T4065 | 146-158 | Entity | denotes | the extracts |
T4055 | 57-79 | Entity | denotes | of multiple substrates |
T4219 | 139-176 | Binding | denotes | Sry in the extracts restored splicing |
T4187 | 10-17 | Protein | denotes | of Sox6 |
T4176 | 21-39 | Entity | denotes | HeLa cell extracts |
T4160 | 124-135 | Protein | denotes | Sox6, Sox9, |
R3013 | T4088 | T4219 | themeOf | Sry,Sry in the extracts restored splicing |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3130 | 229-230 | . | denotes | . |
T3129 | 228-229 | NNP | denotes | ] |
T3128 | 227-228 | CD | denotes | 7 |
T3127 | 226-227 | VBP | denotes | [ |
T3126 | 217-225 | NNS | denotes | proteins |
T3125 | 211-216 | DT | denotes | these |
T3124 | 208-210 | IN | denotes | of |
T3123 | 200-207 | VBP | denotes | overlap |
T3122 | 189-199 | JJ | denotes | functional |
T3121 | 178-188 | VBG | denotes | indicating |
T3120 | 176-177 | , | denotes | , |
T3119 | 168-176 | NN | denotes | splicing |
T3118 | 159-167 | VBD | denotes | restored |
T3117 | 150-158 | NNS | denotes | extracts |
T3116 | 146-149 | DT | denotes | the |
T3115 | 143-145 | IN | denotes | in |
T3114 | 139-142 | NNP | denotes | Sry |
T3113 | 136-138 | CC | denotes | or |
T3112 | 134-135 | , | denotes | , |
T3111 | 130-134 | NNP | denotes | Sox9 |
T3110 | 128-129 | , | denotes | , |
T3109 | 124-128 | NNP | denotes | Sox6 |
T3108 | 117-123 | DT | denotes | either |
T3107 | 114-116 | IN | denotes | of |
T3106 | 107-113 | NN | denotes | domain |
T3105 | 103-106 | NNP | denotes | HMG |
T3104 | 99-102 | DT | denotes | the |
T3103 | 96-98 | IN | denotes | of |
T3102 | 85-95 | NN | denotes | expression |
T3101 | 81-84 | CC | denotes | and |
T3100 | 79-80 | , | denotes | , |
T3099 | 69-79 | NNS | denotes | substrates |
T3098 | 60-68 | JJ | denotes | multiple |
T3097 | 57-59 | IN | denotes | of |
T3096 | 48-56 | NN | denotes | splicing |
T3095 | 40-47 | VBN | denotes | blocked |
T3094 | 31-39 | VBZ | denotes | extracts |
T3093 | 26-30 | NN | denotes | cell |
T3092 | 21-25 | NNP | denotes | HeLa |
T3091 | 18-20 | IN | denotes | in |
T3090 | 13-17 | NNP | denotes | Sox6 |
T3089 | 10-12 | IN | denotes | of |
T3088 | 0-9 | NN | denotes | Depletion |
R2061 | T3120 | T3118 | punct | ",",restored |
R2063 | T3121 | T3118 | advcl | indicating,restored |
R2064 | T3122 | T3123 | amod | functional,overlap |
R2065 | T3123 | T3121 | dobj | overlap,indicating |
R2066 | T3124 | T3123 | prep | of,overlap |
R2067 | T3125 | T3126 | det | these,proteins |
R2069 | T3126 | T3124 | pobj | proteins,of |
R2070 | T3127 | T3123 | conj | [,overlap |
R2071 | T3128 | T3129 | nummod | 7,] |
R2073 | T3129 | T3127 | dobj | ],[ |
R2074 | T3130 | T3118 | punct | .,restored |
R2187 | T3088 | T3095 | nsubj | Depletion,blocked |
R2190 | T3089 | T3088 | prep | of,Depletion |
R2191 | T3090 | T3089 | pobj | Sox6,of |
R2192 | T3091 | T3090 | prep | in,Sox6 |
R2196 | T3092 | T3093 | compound | HeLa,cell |
R2199 | T3093 | T3094 | compound | cell,extracts |
R2203 | T3094 | T3095 | nsubj | extracts,blocked |
R2207 | T3095 | T3095 | ROOT | blocked,blocked |
R2210 | T3096 | T3095 | dobj | splicing,blocked |
R2217 | T3097 | T3096 | prep | of,splicing |
R2221 | T3098 | T3099 | amod | multiple,substrates |
R2225 | T3099 | T3097 | pobj | substrates,of |
R2229 | T3100 | T3095 | punct | ",",blocked |
R2233 | T3101 | T3095 | cc | and,blocked |
R2237 | T3102 | T3095 | conj | expression,blocked |
R2240 | T3103 | T3102 | prep | of,expression |
R2244 | T3104 | T3106 | det | the,domain |
R2247 | T3105 | T3106 | compound | HMG,domain |
R2252 | T3106 | T3103 | pobj | domain,of |
R2255 | T3107 | T3106 | prep | of,domain |
R2259 | T3108 | T3118 | preconj | either,restored |
R2262 | T3109 | T3118 | nsubj | Sox6,restored |
R2264 | T3110 | T3109 | punct | ",",Sox6 |
R2270 | T3111 | T3109 | conj | Sox9,Sox6 |
R2273 | T3112 | T3111 | punct | ",",Sox9 |
R2278 | T3113 | T3111 | cc | or,Sox9 |
R2282 | T3114 | T3111 | conj | Sry,Sox9 |
R2286 | T3115 | T3109 | prep | in,Sox6 |
R2290 | T3116 | T3117 | det | the,extracts |
R2294 | T3117 | T3115 | pobj | extracts,in |
R2298 | T3118 | T3095 | conj | restored,blocked |
R2302 | T3119 | T3118 | dobj | splicing,restored |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1520 | 85-95 | Gene_expression | denotes | expression |
T1519 | 85-95 | Gene_expression | denotes | expression |
T1518 | 85-95 | Gene_expression | denotes | expression |
T1517 | 85-95 | Gene_expression | denotes | expression |
T1516 | 0-9 | Localization | denotes | Depletion |
T1515 | 139-142 | Protein | denotes | Sry |
T1514 | 130-134 | Protein | denotes | Sox9 |
T1513 | 124-128 | Protein | denotes | Sox6 |
T1512 | 103-113 | Protein | denotes | HMG domain |
T1511 | 13-17 | Protein | denotes | Sox6 |
R759 | T1511 | T1516 | themeOf | Sox6,Depletion |
R760 | T1512 | T1517 | themeOf | HMG domain,expression |
R761 | T1513 | T1518 | themeOf | Sox6,expression |
R762 | T1514 | T1519 | themeOf | Sox9,expression |
R763 | T1515 | T1520 | themeOf | Sry,expression |
testone
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1034 | 85-95 | Gene_expression | denotes | expression |
T985 | 139-142 | Protein | denotes | Sry |
T984 | 130-134 | Protein | denotes | Sox9 |
T983 | 124-128 | Protein | denotes | Sox6 |
T982 | 13-17 | Protein | denotes | Sox6 |
R599 | T983 | T1034 | themeOf | Sox6,expression |
R600 | T984 | T1034 | themeOf | Sox9,expression |
R601 | T985 | T1034 | themeOf | Sry,expression |
test3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1130 | 139-142 | Protein | denotes | Sry |
T1129 | 130-134 | Protein | denotes | Sox9 |
T1128 | 124-128 | Protein | denotes | Sox6 |
T1127 | 107-113 | Entity | denotes | domain |
T1126 | 85-95 | Gene_expression | denotes | expression |
T1125 | 13-17 | Protein | denotes | Sox6 |
T1073 | 139-142 | Protein | denotes | Sry |
T1072 | 130-134 | Protein | denotes | Sox9 |
T1071 | 124-128 | Protein | denotes | Sox6 |
T1070 | 13-17 | Protein | denotes | Sox6 |
R639 | T1128 | T1126 | themeOf | Sox6,expression |
R640 | T1129 | T1126 | themeOf | Sox9,expression |
R641 | T1130 | T1126 | themeOf | Sry,expression |