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PMC:1359074 / 35568-35886 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16443 316-317 -RRB- denotes )
T16442 313-316 CD denotes −18
T16441 310-312 TO denotes to
T16440 306-309 CD denotes −63
T16439 305-306 -LRB- denotes (
T16438 302-304 NN denotes 3′
T16437 253-301 NN denotes 5′CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
T16436 251-252 -COMMA- denotes ,
T16435 244-251 NN denotes MHB1663
T16434 240-243 CC denotes and
T16433 238-239 -COLON- denotes ;
T16432 237-238 -RRB- denotes )
T16431 234-237 CD denotes −16
T16430 231-233 TO denotes to
T16429 227-230 CD denotes −63
T16428 226-227 -LRB- denotes (
T16427 174-225 NN denotes 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′
T16426 172-173 -COMMA- denotes ,
T16425 165-172 NN denotes MHB1662
T16424 163-164 -COLON- denotes ;
T16423 162-163 -RRB- denotes )
T16422 159-162 CD denotes −19
T16421 156-158 TO denotes to
T16420 152-155 CD denotes −63
T16419 151-152 -LRB- denotes (
T16418 101-150 NN denotes 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′
T16417 99-100 -COMMA- denotes ,
T16416 92-99 NN denotes MHB1661
T16415 90-91 -COLON- denotes :
T16414 83-90 VB denotes include
T16413 72-82 NN denotes constructs
T16412 63-71 NN denotes reporter
T16411 54-62 NN denotes promoter
T16410 51-53 NN denotes ɛy
T16409 39-50 VB denotes mutagenized
T16408 33-38 DT denotes these
T16407 24-32 VB denotes generate
T16406 21-23 TO denotes to
T16405 16-20 VB denotes used
T16404 8-15 NN denotes primers
T16403 0-7 JJ denotes Forward
R11415 T16404 T16403 arg1Of primers,Forward
R11416 T16404 T16405 arg2Of primers,used
R11417 T16404 T16414 arg1Of primers,include
R11418 T16407 T16405 arg3Of generate,used
R11419 T16407 T16406 arg1Of generate,to
R11420 T16413 T16407 arg2Of constructs,generate
R11421 T16413 T16408 arg1Of constructs,these
R11422 T16413 T16409 arg2Of constructs,mutagenized
R11423 T16413 T16410 arg1Of constructs,ɛy
R11424 T16413 T16411 arg1Of constructs,promoter
R11425 T16413 T16412 arg1Of constructs,reporter
R11426 T16414 T16415 arg1Of include,:
R11427 T16416 T16414 arg2Of MHB1661,include
R11428 T16416 T16417 arg1Of MHB1661,","
R11429 T16416 T16424 arg1Of MHB1661,;
R11430 T16418 T16417 arg2Of 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′,","
R11431 T16418 T16419 arg1Of 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′,(
R11432 T16422 T16419 arg2Of −19,(
R11433 T16422 T16420 arg1Of −19,−63
R11434 T16422 T16421 arg1Of −19,to
R11435 T16423 T16419 arg3Of ),(
R11436 T16425 T16426 arg1Of MHB1662,","
R11437 T16425 T16434 arg1Of MHB1662,and
R11438 T16427 T16426 arg2Of 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′,","
R11439 T16427 T16428 arg1Of 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′,(
R11440 T16431 T16428 arg2Of −16,(
R11441 T16431 T16429 arg1Of −16,−63
R11442 T16431 T16430 arg1Of −16,to
R11443 T16432 T16428 arg3Of ),(
R11444 T16434 T16424 arg2Of and,;
R11445 T16434 T16433 arg1Of and,;
R11446 T16435 T16434 arg2Of MHB1663,and
R11447 T16435 T16436 arg1Of MHB1663,","
R11448 T16438 T16436 arg2Of 3′,","
R11449 T16438 T16437 arg1Of 3′,5′CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
R11450 T16438 T16439 arg1Of 3′,(
R11451 T16442 T16439 arg2Of −18,(
R11452 T16442 T16440 arg1Of −18,−63
R11453 T16442 T16441 arg1Of −18,to
R11454 T16443 T16439 arg3Of ),(

sentences

Id Subject Object Predicate Lexical cue
T16008 0-318 Sentence denotes Forward primers used to generate these mutagenized ɛy promoter reporter constructs include: MHB1661, 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′ (−63 to −19); MHB1662, 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′ (−63 to −16); and MHB1663, 5′CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA 3′ (−63 to −18).
T264 0-318 Sentence denotes Forward primers used to generate these mutagenized ɛy promoter reporter constructs include: MHB1661, 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′ (−63 to −19); MHB1662, 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′ (−63 to −16); and MHB1663, 5′CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA 3′ (−63 to −18).

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17039 51-62 Entity denotes ɛy promoter
T17060 51-53 Protein denotes ɛy
R11925 T17039 T17060 partOf ɛy promoter,ɛy

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16996 317-318 . denotes .
T16995 316-317 -RRB- denotes )
T16994 314-316 CD denotes 18
T16993 313-314 CD denotes −
T16992 310-312 TO denotes to
T16991 307-309 CD denotes 63
T16990 306-307 FW denotes −
T16989 305-306 -LRB- denotes (
T16988 303-304 NN denotes ′
T16987 302-303 CD denotes 3
T16986 255-301 NNP denotes CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
T16985 254-255 NN denotes ′
T16984 253-254 CD denotes 5
T16983 251-252 , denotes ,
T16982 244-251 NNP denotes MHB1663
T16981 240-243 CC denotes and
T16980 238-239 : denotes ;
T16979 237-238 -RRB- denotes )
T16978 235-237 CD denotes 16
T16977 234-235 CD denotes −
T16976 231-233 TO denotes to
T16975 228-230 CD denotes 63
T16974 227-228 FW denotes −
T16973 226-227 -LRB- denotes (
T16972 224-225 NN denotes ′
T16971 176-224 CD denotes CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3
T16970 175-176 NN denotes ′
T16969 174-175 CD denotes 5
T16968 172-173 , denotes ,
T16967 165-172 NNP denotes MHB1662
T16966 163-164 : denotes ;
T16965 162-163 -RRB- denotes )
T16964 160-162 CD denotes 19
T16963 159-160 CD denotes −
T16962 156-158 TO denotes to
T16961 153-155 CD denotes 63
T16960 152-153 FW denotes −
T16959 151-152 -LRB- denotes (
T16958 149-150 NN denotes ′
T16957 103-149 CD denotes CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3
T16956 102-103 NN denotes ′
T16955 101-102 CD denotes 5
T16954 99-100 , denotes ,
T16953 92-99 CD denotes MHB1661
T16952 90-91 : denotes :
T16951 83-90 VBP denotes include
T16950 72-82 NNS denotes constructs
T16949 63-71 NN denotes reporter
T16948 54-62 NN denotes promoter
T16947 51-53 NN denotes ɛy
T16946 39-50 VBN denotes mutagenized
T16945 33-38 DT denotes these
T16944 24-32 VB denotes generate
T16943 21-23 TO denotes to
T16942 16-20 VBN denotes used
T16941 8-15 NNS denotes primers
T16940 0-7 RB denotes Forward
R11877 T16961 T16960 nummod 63,−
R11878 T16962 T16961 prep to,63
R11879 T16963 T16962 pobj −,to
R11880 T16964 T16963 appos 19,−
R11881 T16965 T16963 punct ),−
R11882 T16966 T16967 punct ;,MHB1662
R11883 T16967 T16951 dobj MHB1662,include
R11884 T16968 T16967 punct ",",MHB1662
R11885 T16969 T16970 nummod 5,′
R11886 T16970 T16986 nmod ′,CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
R11887 T16971 T16972 nummod CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3,′
R11888 T16972 T16970 appos ′,′
R11889 T16973 T16974 punct (,−
R11890 T16974 T16972 appos −,′
R11891 T16975 T16974 nummod 63,−
R11892 T16976 T16975 prep to,63
R11893 T16977 T16976 pobj −,to
R11894 T16978 T16977 appos 16,−
R11895 T16979 T16977 punct ),−
R11896 T16980 T16970 punct ;,′
R11897 T16981 T16970 cc and,′
R11898 T16982 T16970 conj MHB1663,′
R11899 T16983 T16982 punct ",",MHB1663
R11900 T16984 T16985 nummod 5,′
R11901 T16985 T16986 compound ′,CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
R11902 T16986 T16967 conj CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA,MHB1662
R11903 T16987 T16988 nummod 3,′
R11904 T16988 T16986 appos ′,CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
R11905 T16989 T16990 punct (,−
R11906 T16990 T16988 appos −,′
R11907 T16991 T16990 nummod 63,−
R11908 T16992 T16990 prep to,−
R11909 T16993 T16992 pobj −,to
R11910 T16994 T16993 appos 18,−
R11911 T16995 T16993 punct ),−
R11912 T16996 T16951 punct .,include
R11856 T16940 T16941 amod Forward,primers
R11857 T16941 T16951 nsubj primers,include
R11858 T16942 T16941 acl used,primers
R11859 T16943 T16944 aux to,generate
R11860 T16944 T16942 xcomp generate,used
R11861 T16945 T16950 det these,constructs
R11862 T16946 T16950 amod mutagenized,constructs
R11863 T16947 T16950 compound ɛy,constructs
R11864 T16948 T16949 compound promoter,reporter
R11865 T16949 T16950 compound reporter,constructs
R11866 T16950 T16951 nsubj constructs,include
R11867 T16951 T16951 ROOT include,include
R11868 T16952 T16951 punct :,include
R11869 T16953 T16967 nummod MHB1661,MHB1662
R11870 T16954 T16956 punct ",",′
R11871 T16955 T16956 nummod 5,′
R11872 T16956 T16967 nmod ′,MHB1662
R11873 T16957 T16958 nummod CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3,′
R11874 T16958 T16956 appos ′,′
R11875 T16959 T16960 punct (,−
R11876 T16960 T16958 appos −,′

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16520 39-82 Protein denotes mutagenized ɛy promoter reporter constructs