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PMC:1359074 / 35286-35886 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-14530442-85761024 15-17 14530442 denotes 15
16462943-12677004-85761025 192-194 12677004 denotes 32
T89386 15-17 14530442 denotes 15
T39276 192-194 12677004 denotes 32

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16443 598-599 -RRB- denotes )
T16442 595-598 CD denotes −18
T16441 592-594 TO denotes to
T16440 588-591 CD denotes −63
T16439 587-588 -LRB- denotes (
T16438 584-586 NN denotes 3′
T16437 535-583 NN denotes 5′CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
T16436 533-534 -COMMA- denotes ,
T16435 526-533 NN denotes MHB1663
T16434 522-525 CC denotes and
T16433 520-521 -COLON- denotes ;
T16432 519-520 -RRB- denotes )
T16431 516-519 CD denotes −16
T16430 513-515 TO denotes to
T16429 509-512 CD denotes −63
T16428 508-509 -LRB- denotes (
T16427 456-507 NN denotes 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′
T16426 454-455 -COMMA- denotes ,
T16425 447-454 NN denotes MHB1662
T16424 445-446 -COLON- denotes ;
T16423 444-445 -RRB- denotes )
T16422 441-444 CD denotes −19
T16421 438-440 TO denotes to
T16420 434-437 CD denotes −63
T16374 127-131 WDT denotes that
T16373 125-126 -RRB- denotes )
T16372 107-125 NN denotes Sox6-ΔHMG-pcDNA3.1
T16371 106-107 -LRB- denotes (
T16370 96-105 NN denotes construct
T16369 81-95 NN denotes overexpression
T16368 76-80 NN denotes Sox6
T16367 72-75 DT denotes the
T16366 69-71 IN denotes of
T16365 61-68 NN denotes version
T16364 51-60 VB denotes truncated
T16363 49-50 DT denotes A
T16362 43-47 NN denotes Sox6
T16361 31-42 VB denotes overexpress
T16360 28-30 TO denotes to
T16359 23-27 VB denotes used
T16358 19-22 VB denotes was
T16357 17-18 -RRB- denotes ]
T16356 15-17 CD denotes 15
T16355 14-15 -LRB- denotes [
T16354 0-13 NN denotes Sox6-pcDNA3.1
T16419 433-434 -LRB- denotes (
T16418 383-432 NN denotes 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′
T16417 381-382 -COMMA- denotes ,
T16416 374-381 NN denotes MHB1661
T16415 372-373 -COLON- denotes :
T16414 365-372 VB denotes include
T16413 354-364 NN denotes constructs
T16412 345-353 NN denotes reporter
T16411 336-344 NN denotes promoter
T16410 333-335 NN denotes ɛy
T16409 321-332 VB denotes mutagenized
T16408 315-320 DT denotes these
T16407 306-314 VB denotes generate
T16406 303-305 TO denotes to
T16405 298-302 VB denotes used
T16404 290-297 NN denotes primers
T16403 282-289 JJ denotes Forward
T16402 277-280 NN denotes PCR
T16401 274-276 IN denotes by
T16400 269-273 VB denotes done
T16399 264-268 VB denotes were
T16398 255-263 NN denotes promoter
T16397 252-254 JJ denotes ɛy
T16396 248-251 DT denotes the
T16395 245-247 IN denotes of
T16394 239-244 NN denotes sites
T16393 231-238 NN denotes binding
T16392 221-230 NN denotes consensus
T16391 212-220 NN denotes Sox/Sox6
T16390 209-211 IN denotes of
T16389 197-208 NN denotes Mutagenesis
T16388 194-195 -RRB- denotes ]
T16387 192-194 CD denotes 32
T16386 191-192 -LRB- denotes [
T16385 184-190 NN denotes others
T16384 181-183 IN denotes by
T16383 171-180 VB denotes described
T16382 168-170 IN denotes as
T16381 166-167 -COMMA- denotes ,
T16380 157-166 VB denotes generated
T16379 153-156 VB denotes was
T16378 146-152 NN denotes domain
T16377 142-145 NN denotes HMG
T16376 138-141 DT denotes the
T16375 132-137 VB denotes lacks
R11365 T16354 T16355 arg1Of Sox6-pcDNA3.1,[
R11366 T16354 T16358 arg1Of Sox6-pcDNA3.1,was
R11367 T16354 T16359 arg2Of Sox6-pcDNA3.1,used
R11368 T16354 T16361 arg1Of Sox6-pcDNA3.1,overexpress
R11369 T16356 T16355 arg2Of 15,[
R11370 T16357 T16355 arg3Of ],[
R11371 T16359 T16358 arg2Of used,was
R11372 T16361 T16359 arg3Of overexpress,used
R11373 T16361 T16360 arg1Of overexpress,to
R11374 T16362 T16361 arg2Of Sox6,overexpress
R11375 T16365 T16363 arg1Of version,A
R11376 T16365 T16364 arg2Of version,truncated
R11377 T16365 T16366 arg1Of version,of
R11378 T16365 T16379 arg1Of version,was
R11379 T16365 T16380 arg2Of version,generated
R11380 T16370 T16366 arg2Of construct,of
R11381 T16370 T16367 arg1Of construct,the
R11382 T16370 T16368 arg1Of construct,Sox6
R11383 T16370 T16369 arg1Of construct,overexpression
R11384 T16370 T16371 arg1Of construct,(
R11385 T16370 T16374 arg1Of construct,that
R11386 T16370 T16375 arg1Of construct,lacks
R11387 T16372 T16371 arg2Of Sox6-ΔHMG-pcDNA3.1,(
R11388 T16373 T16371 arg3Of ),(
R11389 T16378 T16375 arg2Of domain,lacks
R11390 T16378 T16376 arg1Of domain,the
R11391 T16378 T16377 arg1Of domain,HMG
R11392 T16380 T16379 arg2Of generated,was
R11393 T16380 T16381 arg1Of generated,","
R11394 T16380 T16382 arg1Of generated,as
R11395 T16383 T16382 arg2Of described,as
R11396 T16385 T16383 arg1Of others,described
R11397 T16385 T16384 arg2Of others,by
R11398 T16385 T16386 arg1Of others,[
R11399 T16387 T16386 arg2Of 32,[
R11400 T16388 T16386 arg3Of ],[
R11401 T16389 T16390 arg1Of Mutagenesis,of
R11402 T16389 T16399 arg1Of Mutagenesis,were
R11403 T16389 T16400 arg2Of Mutagenesis,done
R11404 T16394 T16390 arg2Of sites,of
R11405 T16394 T16391 arg1Of sites,Sox/Sox6
R11406 T16394 T16392 arg1Of sites,consensus
R11407 T16394 T16393 arg1Of sites,binding
R11408 T16394 T16395 arg1Of sites,of
R11409 T16398 T16395 arg2Of promoter,of
R11410 T16398 T16396 arg1Of promoter,the
R11411 T16398 T16397 arg1Of promoter,ɛy
R11412 T16400 T16399 arg2Of done,were
R11413 T16402 T16400 arg1Of PCR,done
R11414 T16402 T16401 arg2Of PCR,by
R11415 T16404 T16403 arg1Of primers,Forward
R11416 T16404 T16405 arg2Of primers,used
R11417 T16404 T16414 arg1Of primers,include
R11418 T16407 T16405 arg3Of generate,used
R11419 T16407 T16406 arg1Of generate,to
R11420 T16413 T16407 arg2Of constructs,generate
R11421 T16413 T16408 arg1Of constructs,these
R11422 T16413 T16409 arg2Of constructs,mutagenized
R11423 T16413 T16410 arg1Of constructs,ɛy
R11424 T16413 T16411 arg1Of constructs,promoter
R11425 T16413 T16412 arg1Of constructs,reporter
R11426 T16414 T16415 arg1Of include,:
R11427 T16416 T16414 arg2Of MHB1661,include
R11428 T16416 T16417 arg1Of MHB1661,","
R11429 T16416 T16424 arg1Of MHB1661,;
R11430 T16418 T16417 arg2Of 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′,","
R11431 T16418 T16419 arg1Of 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′,(
R11432 T16422 T16419 arg2Of −19,(
R11433 T16422 T16420 arg1Of −19,−63
R11434 T16422 T16421 arg1Of −19,to
R11435 T16423 T16419 arg3Of ),(
R11436 T16425 T16426 arg1Of MHB1662,","
R11437 T16425 T16434 arg1Of MHB1662,and
R11438 T16427 T16426 arg2Of 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′,","
R11439 T16427 T16428 arg1Of 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′,(
R11440 T16431 T16428 arg2Of −16,(
R11441 T16431 T16429 arg1Of −16,−63
R11442 T16431 T16430 arg1Of −16,to
R11443 T16432 T16428 arg3Of ),(
R11444 T16434 T16424 arg2Of and,;
R11445 T16434 T16433 arg1Of and,;
R11446 T16435 T16434 arg2Of MHB1663,and
R11447 T16435 T16436 arg1Of MHB1663,","
R11448 T16438 T16436 arg2Of 3′,","
R11449 T16438 T16437 arg1Of 3′,5′CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
R11450 T16438 T16439 arg1Of 3′,(
R11451 T16442 T16439 arg2Of −18,(
R11452 T16442 T16440 arg1Of −18,−63
R11453 T16442 T16441 arg1Of −18,to
R11454 T16443 T16439 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16053 252-254 Protein denotes ɛy
T16052 107-111 Protein denotes Sox6
T16051 76-80 Protein denotes Sox6
T16050 43-47 Protein denotes Sox6
T16049 0-4 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16450 216-220 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T16449 107-111 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T16448 76-80 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T16447 43-47 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T16446 0-4 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-MF

Id Subject Object Predicate Lexical cue
T16056 231-238 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T16008 282-600 Sentence denotes Forward primers used to generate these mutagenized ɛy promoter reporter constructs include: MHB1661, 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′ (−63 to −19); MHB1662, 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′ (−63 to −16); and MHB1663, 5′CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA 3′ (−63 to −18).
T16007 197-281 Sentence denotes Mutagenesis of Sox/Sox6 consensus binding sites of the ɛy promoter were done by PCR.
T16006 49-196 Sentence denotes A truncated version of the Sox6 overexpression construct (Sox6-ΔHMG-pcDNA3.1) that lacks the HMG domain was generated, as described by others [32].
T16005 0-48 Sentence denotes Sox6-pcDNA3.1 [15] was used to overexpress Sox6.
T261 0-48 Sentence denotes Sox6-pcDNA3.1 [15] was used to overexpress Sox6.
T262 49-196 Sentence denotes A truncated version of the Sox6 overexpression construct (Sox6-ΔHMG-pcDNA3.1) that lacks the HMG domain was generated, as described by others [32].
T263 197-281 Sentence denotes Mutagenesis of Sox/Sox6 consensus binding sites of the ɛy promoter were done by PCR.
T264 282-600 Sentence denotes Forward primers used to generate these mutagenized ɛy promoter reporter constructs include: MHB1661, 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′ (−63 to −19); MHB1662, 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′ (−63 to −16); and MHB1663, 5′CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA 3′ (−63 to −18).

simple1

Id Subject Object Predicate Lexical cue
T16072 252-254 Protein denotes ɛy
T16071 107-111 Protein denotes Sox6
T16070 76-80 Protein denotes Sox6
T16069 43-47 Protein denotes Sox6
T16068 0-4 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17096 31-42 Gene_expression denotes overexpress
T17095 31-42 Positive_regulation denotes overexpress
T17091 252-254 Protein denotes ɛy
T17090 107-111 Protein denotes Sox6
T17089 76-80 Protein denotes Sox6
T17088 43-47 Protein denotes Sox6
T17087 0-4 Protein denotes Sox6
R11934 T17088 T17096 themeOf Sox6,overexpress
R11936 T17096 T17095 themeOf overexpress,overexpress

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T16472 81-95 Positive_regulation denotes overexpression
T16471 31-42 Gene_expression denotes overexpress
T16466 252-254 Protein denotes ɛy
T16465 107-111 Protein denotes Sox6
T16464 76-80 Protein denotes Sox6
T16463 43-47 Protein denotes Sox6
T16462 0-4 Protein denotes Sox6
R11458 T16463 T16471 themeOf Sox6,overexpress
R11459 T16464 T16472 themeOf Sox6,overexpression

DLUT931

Id Subject Object Predicate Lexical cue
T16542 81-95 Positive_regulation denotes overexpression
T16541 31-42 Gene_expression denotes overexpress
T16536 252-254 Protein denotes ɛy
T16535 107-111 Protein denotes Sox6
T16534 76-80 Protein denotes Sox6
T16533 43-47 Protein denotes Sox6
T16532 0-4 Protein denotes Sox6
R11472 T16533 T16541 themeOf Sox6,overexpress
R11473 T16534 T16542 themeOf Sox6,overexpression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17054 252-254 Protein denotes ɛy
T17049 138-152 Entity denotes the HMG domain
T17042 76-80 Protein denotes Sox6
T17039 333-344 Entity denotes ɛy promoter
T17037 43-47 Protein denotes Sox6
T17031 245-263 Entity denotes of the ɛy promoter
T17030 274-280 Protein denotes by PCR
T17075 31-47 Gene_expression denotes overexpress Sox6
T17074 31-47 Positive_regulation denotes overexpress Sox6
T17073 69-126 Positive_regulation denotes of the Sox6 overexpression construct (Sox6-ΔHMG-pcDNA3.1)
T17072 69-126 Gene_expression denotes of the Sox6 overexpression construct (Sox6-ΔHMG-pcDNA3.1)
T17060 333-335 Protein denotes ɛy
T17059 212-280 Protein denotes Sox/Sox6 consensus binding sites of the ɛy promoter were done by PCR
R11921 T17031 T17054 partOf of the ɛy promoter,ɛy
R11922 T17037 T17074 themeOf Sox6,overexpress Sox6
R11923 T17037 T17075 themeOf Sox6,overexpress Sox6
R11925 T17039 T17060 partOf ɛy promoter,ɛy
R11926 T17042 T17072 themeOf Sox6,of the Sox6 overexpression construct (Sox6-ΔHMG-pcDNA3.1)
R11927 T17042 T17073 themeOf Sox6,of the Sox6 overexpression construct (Sox6-ΔHMG-pcDNA3.1)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16996 599-600 . denotes .
T16995 598-599 -RRB- denotes )
T16994 596-598 CD denotes 18
T16993 595-596 CD denotes −
T16992 592-594 TO denotes to
T16991 589-591 CD denotes 63
T16990 588-589 FW denotes −
T16989 587-588 -LRB- denotes (
T16988 585-586 NN denotes ′
T16987 584-585 CD denotes 3
T16986 537-583 NNP denotes CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
T16985 536-537 NN denotes ′
T16984 535-536 CD denotes 5
T16983 533-534 , denotes ,
T16982 526-533 NNP denotes MHB1663
T16981 522-525 CC denotes and
T16980 520-521 : denotes ;
T16979 519-520 -RRB- denotes )
T16978 517-519 CD denotes 16
T16977 516-517 CD denotes −
T16976 513-515 TO denotes to
T16975 510-512 CD denotes 63
T16974 509-510 FW denotes −
T16973 508-509 -LRB- denotes (
T16972 506-507 NN denotes ′
T16971 458-506 CD denotes CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3
T16970 457-458 NN denotes ′
T16969 456-457 CD denotes 5
T16968 454-455 , denotes ,
T16967 447-454 NNP denotes MHB1662
T16966 445-446 : denotes ;
T16965 444-445 -RRB- denotes )
T16964 442-444 CD denotes 19
T16963 441-442 CD denotes −
T16962 438-440 TO denotes to
T16961 435-437 CD denotes 63
T16960 434-435 FW denotes −
T16959 433-434 -LRB- denotes (
T16958 431-432 NN denotes ′
T16957 385-431 CD denotes CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3
T16956 384-385 NN denotes ′
T16955 383-384 CD denotes 5
T16954 381-382 , denotes ,
T16953 374-381 CD denotes MHB1661
T16952 372-373 : denotes :
T16951 365-372 VBP denotes include
T16950 354-364 NNS denotes constructs
T16949 345-353 NN denotes reporter
T16948 336-344 NN denotes promoter
T16947 333-335 NN denotes ɛy
T16946 321-332 VBN denotes mutagenized
T16945 315-320 DT denotes these
T16944 306-314 VB denotes generate
T16943 303-305 TO denotes to
T16942 298-302 VBN denotes used
T16941 290-297 NNS denotes primers
T16940 282-289 RB denotes Forward
T16939 280-281 . denotes .
T16938 277-280 NNP denotes PCR
T16937 274-276 IN denotes by
T16936 269-273 VBN denotes done
T16935 264-268 VBD denotes were
T16934 255-263 NN denotes promoter
T16933 252-254 JJ denotes ɛy
T16932 248-251 DT denotes the
T16931 245-247 IN denotes of
T16930 239-244 NNS denotes sites
T16929 231-238 JJ denotes binding
T16928 221-230 NN denotes consensus
T16927 212-220 NNP denotes Sox/Sox6
T16926 209-211 IN denotes of
T16925 197-208 NNP denotes Mutagenesis
T16924 195-196 . denotes .
T16923 194-195 NNP denotes ]
T16922 192-194 CD denotes 32
T16921 191-192 NNP denotes [
T16920 184-190 NNS denotes others
T16919 181-183 IN denotes by
T16918 171-180 VBN denotes described
T16917 168-170 IN denotes as
T16916 166-167 , denotes ,
T16915 157-166 VBN denotes generated
T16914 153-156 VBD denotes was
T16913 146-152 NN denotes domain
T16912 142-145 NNP denotes HMG
T16911 138-141 DT denotes the
T16910 132-137 VBZ denotes lacks
T16909 127-131 WDT denotes that
T16908 125-126 -RRB- denotes )
T16907 123-125 CD denotes .1
T16906 107-123 JJ denotes Sox6-ΔHMG-pcDNA3
T16905 106-107 -LRB- denotes (
T16904 96-105 VBP denotes construct
T16903 81-95 NN denotes overexpression
T16902 76-80 JJ denotes Sox6
T16901 72-75 DT denotes the
T16900 69-71 IN denotes of
T16899 61-68 NN denotes version
T16898 51-60 VBN denotes truncated
T16897 49-50 DT denotes A
T16896 47-48 . denotes .
T16895 43-47 NNP denotes Sox6
T16894 31-42 VB denotes overexpress
T16893 28-30 TO denotes to
T16892 23-27 VBN denotes used
T16891 19-22 VBD denotes was
T16890 17-18 NNP denotes ]
T16889 15-17 CD denotes 15
T16888 14-15 NNP denotes [
T16887 11-13 CD denotes .1
T16886 0-11 JJ denotes Sox6-pcDNA3
R11802 T16886 T16890 amod Sox6-pcDNA3,]
R11803 T16887 T16890 nummod .1,]
R11804 T16888 T16890 nmod [,]
R11805 T16889 T16890 nummod 15,]
R11806 T16890 T16892 nsubjpass ],used
R11807 T16891 T16892 auxpass was,used
R11808 T16892 T16892 ROOT used,used
R11809 T16893 T16894 aux to,overexpress
R11810 T16894 T16892 xcomp overexpress,used
R11811 T16895 T16894 dobj Sox6,overexpress
R11812 T16896 T16892 punct .,used
R11813 T16897 T16899 det A,version
R11877 T16961 T16960 nummod 63,−
R11878 T16962 T16961 prep to,63
R11879 T16963 T16962 pobj −,to
R11880 T16964 T16963 appos 19,−
R11881 T16965 T16963 punct ),−
R11882 T16966 T16967 punct ;,MHB1662
R11883 T16967 T16951 dobj MHB1662,include
R11884 T16968 T16967 punct ",",MHB1662
R11885 T16969 T16970 nummod 5,′
R11886 T16970 T16986 nmod ′,CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
R11887 T16971 T16972 nummod CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3,′
R11888 T16972 T16970 appos ′,′
R11889 T16973 T16974 punct (,−
R11890 T16974 T16972 appos −,′
R11891 T16975 T16974 nummod 63,−
R11892 T16976 T16975 prep to,63
R11893 T16977 T16976 pobj −,to
R11894 T16978 T16977 appos 16,−
R11895 T16979 T16977 punct ),−
R11896 T16980 T16970 punct ;,′
R11897 T16981 T16970 cc and,′
R11898 T16982 T16970 conj MHB1663,′
R11899 T16983 T16982 punct ",",MHB1663
R11900 T16984 T16985 nummod 5,′
R11901 T16985 T16986 compound ′,CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
R11902 T16986 T16967 conj CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA,MHB1662
R11903 T16987 T16988 nummod 3,′
R11904 T16988 T16986 appos ′,CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
R11905 T16989 T16990 punct (,−
R11906 T16990 T16988 appos −,′
R11907 T16991 T16990 nummod 63,−
R11908 T16992 T16990 prep to,−
R11909 T16993 T16992 pobj −,to
R11910 T16994 T16993 appos 18,−
R11911 T16995 T16993 punct ),−
R11912 T16996 T16951 punct .,include
R11814 T16898 T16899 amod truncated,version
R11815 T16899 T16904 nsubj version,construct
R11816 T16900 T16899 prep of,version
R11817 T16901 T16903 det the,overexpression
R11818 T16902 T16903 amod Sox6,overexpression
R11819 T16903 T16900 pobj overexpression,of
R11820 T16904 T16904 ROOT construct,construct
R11821 T16905 T16908 punct (,)
R11822 T16906 T16908 nmod Sox6-ΔHMG-pcDNA3,)
R11823 T16907 T16906 nummod .1,Sox6-ΔHMG-pcDNA3
R11824 T16908 T16904 punct ),construct
R11825 T16909 T16910 nsubj that,lacks
R11826 T16910 T16904 ccomp lacks,construct
R11827 T16911 T16913 det the,domain
R11828 T16912 T16913 compound HMG,domain
R11829 T16913 T16915 nsubjpass domain,generated
R11830 T16914 T16915 auxpass was,generated
R11831 T16915 T16910 ccomp generated,lacks
R11832 T16916 T16915 punct ",",generated
R11833 T16917 T16918 mark as,described
R11834 T16918 T16915 advcl described,generated
R11835 T16919 T16918 agent by,described
R11836 T16920 T16919 pobj others,by
R11837 T16921 T16923 nmod [,]
R11838 T16922 T16923 nummod 32,]
R11839 T16923 T16920 appos ],others
R11840 T16924 T16904 punct .,construct
R11841 T16925 T16936 nsubjpass Mutagenesis,done
R11842 T16926 T16925 prep of,Mutagenesis
R11843 T16927 T16928 compound Sox/Sox6,consensus
R11844 T16928 T16930 nmod consensus,sites
R11845 T16929 T16930 amod binding,sites
R11846 T16930 T16926 pobj sites,of
R11847 T16931 T16930 prep of,sites
R11848 T16932 T16934 det the,promoter
R11849 T16933 T16934 amod ɛy,promoter
R11850 T16934 T16931 pobj promoter,of
R11851 T16935 T16936 auxpass were,done
R11852 T16936 T16936 ROOT done,done
R11853 T16937 T16936 agent by,done
R11854 T16938 T16937 pobj PCR,by
R11855 T16939 T16936 punct .,done
R11856 T16940 T16941 amod Forward,primers
R11857 T16941 T16951 nsubj primers,include
R11858 T16942 T16941 acl used,primers
R11859 T16943 T16944 aux to,generate
R11860 T16944 T16942 xcomp generate,used
R11861 T16945 T16950 det these,constructs
R11862 T16946 T16950 amod mutagenized,constructs
R11863 T16947 T16950 compound ɛy,constructs
R11864 T16948 T16949 compound promoter,reporter
R11865 T16949 T16950 compound reporter,constructs
R11866 T16950 T16951 nsubj constructs,include
R11867 T16951 T16951 ROOT include,include
R11868 T16952 T16951 punct :,include
R11869 T16953 T16967 nummod MHB1661,MHB1662
R11870 T16954 T16956 punct ",",′
R11871 T16955 T16956 nummod 5,′
R11872 T16956 T16967 nmod ′,MHB1662
R11873 T16957 T16958 nummod CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3,′
R11874 T16958 T16956 appos ′,′
R11875 T16959 T16960 punct (,−
R11876 T16960 T16958 appos −,′

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16520 321-364 Protein denotes mutagenized ɛy promoter reporter constructs
T16519 216-220 Protein denotes Sox6
T16518 212-215 Protein denotes Sox
T16517 132-137 Negative_regulation denotes lacks
T16516 142-152 Protein denotes HMG domain
T16515 107-111 Protein denotes Sox6
T16514 76-80 Protein denotes Sox6
T16513 31-42 Positive_regulation denotes overexpress
T16512 31-42 Positive_regulation denotes overexpress
T16511 31-42 Gene_expression denotes overexpress
T16510 31-42 Gene_expression denotes overexpress
T16509 43-47 Protein denotes Sox6
T16508 0-4 Protein denotes Sox6
R11464 T16508 T16510 themeOf Sox6,overexpress
R11465 T16509 T16511 themeOf Sox6,overexpress
R11466 T16510 T16512 themeOf overexpress,overexpress
R11467 T16511 T16513 themeOf overexpress,overexpress
R11468 T16516 T16517 themeOf HMG domain,lacks

testone

Id Subject Object Predicate Lexical cue
T15957 252-254 Protein denotes ɛy
T15956 107-111 Protein denotes Sox6
T15955 76-80 Protein denotes Sox6
T15954 43-47 Protein denotes Sox6
T15953 0-4 Protein denotes Sox6

test3

Id Subject Object Predicate Lexical cue
T15994 252-254 Protein denotes ɛy
T15993 107-111 Protein denotes Sox6
T15992 76-80 Protein denotes Sox6
T15991 43-47 Protein denotes Sox6
T15990 0-4 Protein denotes Sox6
T15976 252-254 Protein denotes ɛy
T15975 107-111 Protein denotes Sox6
T15974 76-80 Protein denotes Sox6
T15973 43-47 Protein denotes Sox6
T15972 0-4 Protein denotes Sox6