PMC:1359074 / 33677-35285
Annnotations
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
16462943-1737096-85761022 | 383-385 | 1737096 | denotes | 50 |
16462943-2748594-85761023 | 823-825 | 2748594 | denotes | 31 |
T43787 | 383-385 | 1737096 | denotes | 50 |
T59528 | 823-825 | 2748594 | denotes | 31 |
pmc-enju-pas
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16184 | 620-624 | WDT | denotes | that |
T16183 | 614-619 | NN | denotes | sites |
T16182 | 606-613 | NN | denotes | HindIII |
T16181 | 602-605 | CC | denotes | and |
T16180 | 597-601 | NN | denotes | XhoI |
T16179 | 587-596 | VB | denotes | contained |
T16178 | 579-586 | NN | denotes | primers |
T16177 | 575-578 | NN | denotes | PCR |
T16176 | 571-574 | DT | denotes | The |
T16175 | 561-569 | NN | denotes | database |
T16174 | 559-560 | -RRB- | denotes | ) |
T16173 | 554-559 | NN | denotes | Mouse |
T16172 | 551-553 | IN | denotes | of |
T16171 | 540-550 | NN | denotes | Annotation |
T16170 | 529-539 | JJ | denotes | Functional |
T16169 | 528-529 | -LRB- | denotes | ( |
T16168 | 521-527 | NNP | denotes | Fantom |
T16167 | 517-520 | DT | denotes | the |
T16166 | 514-516 | IN | denotes | in |
T16165 | 509-513 | NN | denotes | cDNA |
T16164 | 501-508 | JJ | denotes | longest |
T16163 | 497-500 | DT | denotes | the |
T16162 | 494-496 | IN | denotes | on |
T16161 | 488-493 | VB | denotes | based |
T16160 | 485-487 | VB | denotes | is |
T16159 | 480-484 | NN | denotes | site |
T16158 | 474-479 | NN | denotes | start |
T16157 | 458-473 | JJ | denotes | transcriptional |
T16156 | 454-457 | DT | denotes | The |
T16155 | 448-452 | NN | denotes | site |
T16154 | 442-447 | NN | denotes | start |
T16153 | 428-441 | NN | denotes | transcription |
T16152 | 424-427 | DT | denotes | the |
T16151 | 421-423 | TO | denotes | to |
T16150 | 412-420 | JJ | denotes | relative |
T16149 | 409-411 | VB | denotes | is |
T16148 | 399-408 | NN | denotes | numbering |
T16147 | 388-398 | NN | denotes | Nucleotide |
T16146 | 385-386 | -RRB- | denotes | ] |
T16145 | 383-385 | CD | denotes | 50 |
T16144 | 382-383 | -LRB- | denotes | [ |
T16143 | 377-381 | NN | denotes | site |
T16142 | 373-376 | NN | denotes | cap |
T16141 | 368-372 | NN | denotes | gene |
T16140 | 361-367 | NN | denotes | globin |
T16139 | 359-360 | NN | denotes | ɛ |
T16138 | 355-358 | DT | denotes | the |
T16137 | 352-354 | IN | denotes | of |
T16136 | 343-351 | RB | denotes | upstream |
T16135 | 334-342 | NN | denotes | sequence |
T16134 | 331-333 | IN | denotes | of |
T16133 | 328-330 | NN | denotes | kb |
T16132 | 326-327 | CD | denotes | 2 |
T16131 | 320-325 | IN | denotes | about |
T16130 | 309-319 | VB | denotes | containing |
T16129 | 300-308 | NN | denotes | fragment |
T16128 | 294-299 | NN | denotes | EcoRI |
T16127 | 287-293 | JJ | denotes | 3.7-kb |
T16126 | 285-286 | DT | denotes | a |
T16125 | 278-284 | IN | denotes | within |
T16124 | 270-277 | JJ | denotes | located |
T16123 | 266-269 | VB | denotes | are |
T16122 | 256-265 | NN | denotes | silencing |
T16121 | 251-255 | NN | denotes | gene |
T16120 | 249-250 | NN | denotes | ɛ |
T16119 | 245-248 | IN | denotes | for |
T16118 | 236-244 | VB | denotes | required |
T16117 | 226-235 | NN | denotes | sequences |
T16116 | 222-225 | DT | denotes | all |
T16115 | 217-221 | IN | denotes | that |
T16114 | 211-216 | VB | denotes | shown |
T16113 | 206-210 | VB | denotes | been |
T16112 | 202-205 | VB | denotes | has |
T16111 | 199-201 | PRP | denotes | it |
T16110 | 191-198 | IN | denotes | because |
T16109 | 189-190 | -COMMA- | denotes | , |
T16108 | 185-189 | VB | denotes | used |
T16107 | 181-184 | VB | denotes | was |
T16106 | 179-180 | -RRB- | denotes | ) |
T16105 | 176-179 | NN | denotes | ATG |
T16104 | 175-176 | -LRB- | denotes | ( |
T16103 | 169-174 | NN | denotes | codon |
T16102 | 158-168 | NN | denotes | initiation |
T16101 | 151-157 | NN | denotes | globin |
T16100 | 148-150 | JJ | denotes | ɛy |
T16099 | 144-147 | DT | denotes | the |
T16098 | 141-143 | IN | denotes | of |
T16097 | 132-140 | RB | denotes | upstream |
T16096 | 123-131 | NN | denotes | fragment |
T16095 | 116-122 | JJ | denotes | 2.2-kb |
T16094 | 114-115 | DT | denotes | A |
T16093 | 104-112 | NN | denotes | promoter |
T16092 | 95-103 | JJ | denotes | proximal |
T16091 | 92-94 | JJ | denotes | ɛy |
T16090 | 88-91 | DT | denotes | the |
T16089 | 85-87 | IN | denotes | of |
T16088 | 71-84 | NN | denotes | amplification |
T16087 | 67-70 | NN | denotes | PCR |
T16086 | 64-66 | IN | denotes | by |
T16085 | 54-63 | VB | denotes | generated |
T16084 | 50-53 | VB | denotes | was |
T16083 | 48-49 | -RRB- | denotes | ) |
T16082 | 43-48 | NN | denotes | E-luc |
T16081 | 42-43 | -LRB- | denotes | ( |
T16080 | 34-41 | NN | denotes | plasmid |
T16079 | 25-33 | NN | denotes | reporter |
T16078 | 16-24 | NN | denotes | deletion |
T16077 | 7-15 | NN | denotes | promoter |
T16076 | 4-6 | JJ | denotes | ɛy |
T16075 | 0-3 | DT | denotes | The |
T16353 | 1606-1607 | -RRB- | denotes | ) |
T16352 | 1603-1606 | CD | denotes | +20 |
T16351 | 1600-1602 | TO | denotes | to |
T16350 | 1596-1599 | CD | denotes | +45 |
T16349 | 1595-1596 | -LRB- | denotes | ( |
T16348 | 1565-1594 | NN | denotes | 5′CGGAAGCTTGGGAGGTTGCTGGTGA3′ |
T16347 | 1563-1564 | -COMMA- | denotes | , |
T16346 | 1556-1563 | NN | denotes | MHB1477 |
T16345 | 1554-1555 | -COLON- | denotes | : |
T16344 | 1550-1554 | NN | denotes | site |
T16343 | 1542-1549 | NN | denotes | HindIII |
T16342 | 1535-1541 | NN | denotes | primer |
T16341 | 1527-1534 | JJ | denotes | reverse |
T16340 | 1523-1526 | DT | denotes | the |
T16339 | 1518-1522 | IN | denotes | with |
T16338 | 1506-1517 | NN | denotes | combination |
T16337 | 1503-1505 | IN | denotes | in |
T16336 | 1498-1502 | VB | denotes | used |
T16335 | 1493-1497 | VB | denotes | were |
T16334 | 1485-1492 | NN | denotes | primers |
T16333 | 1477-1484 | JJ | denotes | forward |
T16332 | 1473-1476 | DT | denotes | All |
T16331 | 1470-1471 | -RRB- | denotes | ) |
T16330 | 1468-1470 | CD | denotes | −9 |
T16329 | 1465-1467 | TO | denotes | to |
T16328 | 1461-1464 | CD | denotes | −37 |
T16327 | 1460-1461 | -LRB- | denotes | ( |
T16326 | 1457-1459 | NN | denotes | 3′ |
T16325 | 1425-1456 | NN | denotes | 5′CCGCTCGAGGTCTGCGAAGAATAAAAGGC |
T16324 | 1423-1424 | -COMMA- | denotes | , |
T16323 | 1416-1423 | NN | denotes | MHB1507 |
T16322 | 1412-1415 | CC | denotes | and |
T16321 | 1410-1411 | -COLON- | denotes | ; |
T16320 | 1409-1410 | -RRB- | denotes | ) |
T16319 | 1406-1409 | CD | denotes | −34 |
T16318 | 1403-1405 | TO | denotes | to |
T16317 | 1399-1402 | CD | denotes | −63 |
T16316 | 1398-1399 | -LRB- | denotes | ( |
T16315 | 1363-1397 | NN | denotes | 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGA3′ |
T16314 | 1361-1362 | -COMMA- | denotes | , |
T16313 | 1354-1361 | NN | denotes | MHB1532 |
T16312 | 1352-1353 | -COLON- | denotes | ; |
T16311 | 1351-1352 | -RRB- | denotes | ) |
T16310 | 1348-1351 | CD | denotes | −58 |
T16309 | 1345-1347 | TO | denotes | to |
T16308 | 1341-1344 | CD | denotes | −85 |
T16307 | 1340-1341 | -LRB- | denotes | ( |
T16306 | 1307-1339 | NN | denotes | 5′CCGCTCGAGCTGACCAATGGCTTCAAAG3′ |
T16305 | 1305-1306 | -COMMA- | denotes | , |
T16304 | 1298-1305 | NN | denotes | MHB1506 |
T16303 | 1296-1297 | -COLON- | denotes | ; |
T16302 | 1295-1296 | -RRB- | denotes | ) |
T16301 | 1291-1295 | CD | denotes | −169 |
T16300 | 1288-1290 | TO | denotes | to |
T16299 | 1283-1287 | CD | denotes | −197 |
T16298 | 1282-1283 | -LRB- | denotes | ( |
T16297 | 1249-1281 | NN | denotes | 5′CCGCTCGAGGGAGCCAAAAAAAGAATGC3′ |
T16296 | 1247-1248 | -COMMA- | denotes | , |
T16295 | 1240-1247 | NN | denotes | MHB1505 |
T16294 | 1238-1239 | -COLON- | denotes | ; |
T16293 | 1237-1238 | -RRB- | denotes | ) |
T16292 | 1233-1237 | CD | denotes | −605 |
T16291 | 1230-1232 | TO | denotes | to |
T16290 | 1225-1229 | CD | denotes | −634 |
T16289 | 1224-1225 | -LRB- | denotes | ( |
T16288 | 1189-1223 | NN | denotes | 5′CCGCTCGAGTCTCTACACTGTCACTCCCTG3′ |
T16287 | 1187-1188 | -COMMA- | denotes | , |
T16286 | 1180-1187 | NN | denotes | MHB1503 |
T16285 | 1178-1179 | -COLON- | denotes | ; |
T16284 | 1177-1178 | -RRB- | denotes | ) |
T16283 | 1172-1177 | CD | denotes | −2052 |
T16282 | 1169-1171 | TO | denotes | to |
T16281 | 1163-1168 | CD | denotes | −2077 |
T16280 | 1162-1163 | -LRB- | denotes | ( |
T16279 | 1131-1161 | NN | denotes | 5′CCGCTCGAGTGCTAGGCAAACACTCA3′ |
T16278 | 1129-1130 | -COMMA- | denotes | , |
T16277 | 1122-1129 | NN | denotes | MHB1457 |
T16276 | 1120-1121 | -COLON- | denotes | : |
T16275 | 1113-1120 | VB | denotes | include |
T16274 | 1108-1112 | NN | denotes | site |
T16273 | 1103-1107 | NN | denotes | XhoI |
T16272 | 1100-1102 | DT | denotes | an |
T16271 | 1095-1099 | IN | denotes | with |
T16270 | 1087-1094 | NN | denotes | primers |
T16269 | 1079-1086 | JJ | denotes | Forward |
T16268 | 1068-1077 | RB | denotes | similarly |
T16267 | 1058-1067 | VB | denotes | generated |
T16266 | 1053-1057 | VB | denotes | were |
T16265 | 1044-1052 | NN | denotes | promoter |
T16264 | 1041-1043 | JJ | denotes | ɛy |
T16263 | 1037-1040 | DT | denotes | the |
T16262 | 1034-1036 | IN | denotes | of |
T16261 | 1023-1033 | NN | denotes | constructs |
T16260 | 1014-1022 | NN | denotes | deletion |
T16259 | 1011-1013 | IN | denotes | of |
T16258 | 1004-1010 | NN | denotes | series |
T16257 | 1002-1003 | DT | denotes | A |
T16256 | 992-1000 | NN | denotes | promoter |
T16255 | 989-991 | JJ | denotes | ɛy |
T16254 | 985-988 | DT | denotes | the |
T16253 | 982-984 | IN | denotes | by |
T16252 | 975-981 | VB | denotes | driven |
T16251 | 972-974 | VB | denotes | is |
T16250 | 961-971 | NN | denotes | expression |
T16249 | 950-960 | NN | denotes | luciferase |
T16248 | 944-949 | WDT | denotes | which |
T16247 | 941-943 | IN | denotes | in |
T16246 | 931-940 | NN | denotes | construct |
T16245 | 922-930 | NN | denotes | reporter |
T16244 | 920-921 | DT | denotes | a |
T16243 | 917-919 | IN | denotes | in |
T16242 | 907-916 | VB | denotes | resulting |
T16241 | 905-906 | -COMMA- | denotes | , |
T16240 | 898-905 | NN | denotes | plasmid |
T16239 | 892-897 | JJ | denotes | Basic |
T16238 | 887-891 | NN | denotes | pGL3 |
T16237 | 881-886 | JJ | denotes | above |
T16236 | 877-880 | DT | denotes | the |
T16235 | 874-876 | IN | denotes | in |
T16234 | 865-873 | NN | denotes | promoter |
T16233 | 862-864 | JJ | denotes | ɛy |
T16232 | 858-861 | DT | denotes | the |
T16231 | 855-857 | IN | denotes | of |
T16230 | 846-854 | RB | denotes | upstream |
T16229 | 837-845 | VB | denotes | inserted |
T16228 | 832-836 | RB | denotes | then |
T16227 | 828-831 | VB | denotes | was |
T16226 | 826-827 | -RRB- | denotes | ) |
T16225 | 825-826 | -RRB- | denotes | ] |
T16224 | 823-825 | CD | denotes | 31 |
T16223 | 822-823 | -LRB- | denotes | [ |
T16222 | 820-821 | -COLON- | denotes | ; |
T16221 | 817-820 | NN | denotes | LCR |
T16220 | 811-816 | NN | denotes | micro |
T16219 | 810-811 | -LRB- | denotes | ( |
T16218 | 806-809 | CD | denotes | 9.3 |
T16217 | 800-805 | NN | denotes | μLCRβ |
T16216 | 797-799 | IN | denotes | of |
T16215 | 788-796 | NN | denotes | fragment |
T16214 | 778-787 | NN | denotes | SstI/XhoI |
T16213 | 771-777 | JJ | denotes | 2.5-kb |
T16212 | 769-770 | DT | denotes | A |
T16211 | 766-767 | -RRB- | denotes | ) |
T16210 | 760-766 | NNP | denotes | States |
T16209 | 753-759 | NNP | denotes | United |
T16208 | 751-752 | -COMMA- | denotes | , |
T16207 | 742-751 | NNP | denotes | Wisconsin |
T16206 | 740-741 | -COMMA- | denotes | , |
T16205 | 733-740 | NNP | denotes | Madison |
T16204 | 731-732 | -COMMA- | denotes | , |
T16203 | 724-731 | NNP | denotes | Promega |
T16202 | 723-724 | -LRB- | denotes | ( |
T16201 | 717-722 | JJ | denotes | Basic |
T16200 | 712-716 | NN | denotes | pGL3 |
T16199 | 709-711 | IN | denotes | in |
T16198 | 704-708 | NN | denotes | gene |
T16197 | 693-703 | NN | denotes | luciferase |
T16196 | 685-692 | NN | denotes | firefly |
T16195 | 681-684 | DT | denotes | the |
T16194 | 678-680 | IN | denotes | of |
T16193 | 669-677 | RB | denotes | upstream |
T16192 | 660-668 | NN | denotes | fragment |
T16191 | 651-659 | NN | denotes | promoter |
T16190 | 648-650 | JJ | denotes | ɛy |
T16189 | 644-647 | DT | denotes | the |
T16188 | 638-643 | VB | denotes | clone |
T16187 | 635-637 | TO | denotes | to |
T16186 | 630-634 | VB | denotes | used |
T16185 | 625-629 | VB | denotes | were |
R11082 | T16080 | T16075 | arg1Of | plasmid,The |
R11083 | T16080 | T16076 | arg1Of | plasmid,ɛy |
R11084 | T16080 | T16077 | arg1Of | plasmid,promoter |
R11085 | T16080 | T16078 | arg1Of | plasmid,deletion |
R11086 | T16080 | T16079 | arg1Of | plasmid,reporter |
R11087 | T16080 | T16081 | arg1Of | plasmid,( |
R11088 | T16080 | T16084 | arg1Of | plasmid,was |
R11089 | T16080 | T16085 | arg2Of | plasmid,generated |
R11090 | T16082 | T16081 | arg2Of | E-luc,( |
R11091 | T16083 | T16081 | arg3Of | ),( |
R11092 | T16085 | T16084 | arg2Of | generated,was |
R11093 | T16088 | T16085 | arg1Of | amplification,generated |
R11094 | T16088 | T16086 | arg2Of | amplification,by |
R11095 | T16088 | T16087 | arg1Of | amplification,PCR |
R11096 | T16088 | T16089 | arg1Of | amplification,of |
R11097 | T16093 | T16089 | arg2Of | promoter,of |
R11098 | T16093 | T16090 | arg1Of | promoter,the |
R11099 | T16093 | T16091 | arg1Of | promoter,ɛy |
R11100 | T16093 | T16092 | arg1Of | promoter,proximal |
R11101 | T16096 | T16094 | arg1Of | fragment,A |
R11102 | T16096 | T16095 | arg1Of | fragment,2.2-kb |
R11103 | T16096 | T16097 | arg1Of | fragment,upstream |
R11104 | T16096 | T16107 | arg1Of | fragment,was |
R11105 | T16096 | T16108 | arg2Of | fragment,used |
R11106 | T16097 | T16098 | arg1Of | upstream,of |
R11107 | T16103 | T16098 | arg2Of | codon,of |
R11108 | T16103 | T16099 | arg1Of | codon,the |
R11109 | T16103 | T16100 | arg1Of | codon,ɛy |
R11110 | T16103 | T16101 | arg1Of | codon,globin |
R11111 | T16103 | T16102 | arg1Of | codon,initiation |
R11112 | T16103 | T16104 | arg1Of | codon,( |
R11113 | T16105 | T16104 | arg2Of | ATG,( |
R11114 | T16106 | T16104 | arg3Of | ),( |
R11115 | T16108 | T16107 | arg2Of | used,was |
R11116 | T16108 | T16109 | arg1Of | used,"," |
R11117 | T16108 | T16110 | arg1Of | used,because |
R11118 | T16111 | T16112 | arg1Of | it,has |
R11119 | T16111 | T16113 | arg1Of | it,been |
R11120 | T16111 | T16114 | arg2Of | it,shown |
R11121 | T16114 | T16110 | arg2Of | shown,because |
R11122 | T16114 | T16112 | arg2Of | shown,has |
R11123 | T16114 | T16113 | arg2Of | shown,been |
R11124 | T16117 | T16116 | arg1Of | sequences,all |
R11125 | T16117 | T16118 | arg2Of | sequences,required |
R11126 | T16117 | T16123 | arg1Of | sequences,are |
R11127 | T16117 | T16124 | arg1Of | sequences,located |
R11128 | T16118 | T16119 | arg1Of | required,for |
R11129 | T16122 | T16119 | arg2Of | silencing,for |
R11130 | T16122 | T16120 | arg1Of | silencing,ɛ |
R11131 | T16122 | T16121 | arg1Of | silencing,gene |
R11132 | T16123 | T16114 | arg3Of | are,shown |
R11133 | T16123 | T16115 | arg1Of | are,that |
R11134 | T16124 | T16123 | arg2Of | located,are |
R11135 | T16124 | T16125 | arg1Of | located,within |
R11136 | T16129 | T16125 | arg2Of | fragment,within |
R11137 | T16129 | T16126 | arg1Of | fragment,a |
R11138 | T16129 | T16127 | arg1Of | fragment,3.7-kb |
R11139 | T16129 | T16128 | arg1Of | fragment,EcoRI |
R11140 | T16129 | T16130 | arg1Of | fragment,containing |
R11141 | T16130 | T16144 | arg1Of | containing,[ |
R11142 | T16132 | T16131 | arg1Of | 2,about |
R11143 | T16133 | T16130 | arg2Of | kb,containing |
R11144 | T16133 | T16132 | arg1Of | kb,2 |
R11145 | T16133 | T16134 | arg1Of | kb,of |
R11146 | T16133 | T16136 | arg1Of | kb,upstream |
R11147 | T16135 | T16134 | arg2Of | sequence,of |
R11148 | T16136 | T16137 | arg1Of | upstream,of |
R11149 | T16143 | T16137 | arg2Of | site,of |
R11150 | T16143 | T16138 | arg1Of | site,the |
R11151 | T16143 | T16139 | arg1Of | site,ɛ |
R11152 | T16143 | T16140 | arg1Of | site,globin |
R11153 | T16143 | T16141 | arg1Of | site,gene |
R11154 | T16143 | T16142 | arg1Of | site,cap |
R11155 | T16145 | T16144 | arg2Of | 50,[ |
R11156 | T16146 | T16144 | arg3Of | ],[ |
R11157 | T16148 | T16147 | arg1Of | numbering,Nucleotide |
R11158 | T16148 | T16149 | arg1Of | numbering,is |
R11159 | T16148 | T16150 | arg1Of | numbering,relative |
R11160 | T16150 | T16149 | arg2Of | relative,is |
R11161 | T16150 | T16151 | arg1Of | relative,to |
R11162 | T16155 | T16151 | arg2Of | site,to |
R11163 | T16155 | T16152 | arg1Of | site,the |
R11164 | T16155 | T16153 | arg1Of | site,transcription |
R11165 | T16155 | T16154 | arg1Of | site,start |
R11166 | T16159 | T16156 | arg1Of | site,The |
R11167 | T16159 | T16157 | arg1Of | site,transcriptional |
R11168 | T16159 | T16158 | arg1Of | site,start |
R11169 | T16159 | T16160 | arg1Of | site,is |
R11170 | T16159 | T16161 | arg2Of | site,based |
R11171 | T16161 | T16160 | arg2Of | based,is |
R11172 | T16161 | T16162 | arg1Of | based,on |
R11173 | T16165 | T16162 | arg2Of | cDNA,on |
R11174 | T16165 | T16163 | arg1Of | cDNA,the |
R11175 | T16165 | T16164 | arg1Of | cDNA,longest |
R11176 | T16165 | T16166 | arg1Of | cDNA,in |
R11177 | T16168 | T16169 | arg1Of | Fantom,( |
R11178 | T16171 | T16169 | arg2Of | Annotation,( |
R11179 | T16171 | T16170 | arg1Of | Annotation,Functional |
R11180 | T16171 | T16172 | arg1Of | Annotation,of |
R11181 | T16173 | T16172 | arg2Of | Mouse,of |
R11182 | T16174 | T16169 | arg3Of | ),( |
R11183 | T16175 | T16166 | arg2Of | database,in |
R11184 | T16175 | T16167 | arg1Of | database,the |
R11185 | T16175 | T16168 | arg1Of | database,Fantom |
R11186 | T16178 | T16176 | arg1Of | primers,The |
R11187 | T16178 | T16177 | arg1Of | primers,PCR |
R11188 | T16178 | T16179 | arg1Of | primers,contained |
R11189 | T16180 | T16181 | arg1Of | XhoI,and |
R11190 | T16182 | T16181 | arg2Of | HindIII,and |
R11191 | T16183 | T16179 | arg2Of | sites,contained |
R11192 | T16183 | T16180 | arg1Of | sites,XhoI |
R11193 | T16183 | T16182 | arg1Of | sites,HindIII |
R11194 | T16183 | T16184 | arg1Of | sites,that |
R11195 | T16183 | T16185 | arg1Of | sites,were |
R11196 | T16183 | T16186 | arg2Of | sites,used |
R11197 | T16186 | T16185 | arg2Of | used,were |
R11198 | T16188 | T16186 | arg3Of | clone,used |
R11199 | T16188 | T16187 | arg1Of | clone,to |
R11200 | T16188 | T16193 | arg1Of | clone,upstream |
R11201 | T16192 | T16188 | arg2Of | fragment,clone |
R11202 | T16192 | T16189 | arg1Of | fragment,the |
R11203 | T16192 | T16190 | arg1Of | fragment,ɛy |
R11204 | T16192 | T16191 | arg1Of | fragment,promoter |
R11205 | T16193 | T16194 | arg1Of | upstream,of |
R11206 | T16198 | T16194 | arg2Of | gene,of |
R11207 | T16198 | T16195 | arg1Of | gene,the |
R11208 | T16198 | T16196 | arg1Of | gene,firefly |
R11209 | T16198 | T16197 | arg1Of | gene,luciferase |
R11210 | T16198 | T16199 | arg1Of | gene,in |
R11211 | T16201 | T16200 | arg1Of | Basic,pGL3 |
R11212 | T16203 | T16204 | arg1Of | Promega,"," |
R11213 | T16204 | T16206 | arg1Of | ",","," |
R11214 | T16205 | T16204 | arg2Of | Madison,"," |
R11215 | T16206 | T16208 | arg1Of | ",","," |
R11216 | T16207 | T16206 | arg2Of | Wisconsin,"," |
R11217 | T16208 | T16199 | arg2Of | ",",in |
R11218 | T16208 | T16201 | arg1Of | ",",Basic |
R11219 | T16208 | T16202 | arg2Of | ",",( |
R11220 | T16210 | T16208 | arg2Of | States,"," |
R11221 | T16210 | T16209 | arg1Of | States,United |
R11222 | T16211 | T16202 | arg3Of | ),( |
R11223 | T16215 | T16212 | arg1Of | fragment,A |
R11224 | T16215 | T16213 | arg1Of | fragment,2.5-kb |
R11225 | T16215 | T16214 | arg1Of | fragment,SstI/XhoI |
R11226 | T16215 | T16216 | arg1Of | fragment,of |
R11227 | T16215 | T16219 | arg1Of | fragment,( |
R11228 | T16215 | T16227 | arg1Of | fragment,was |
R11229 | T16215 | T16229 | arg2Of | fragment,inserted |
R11230 | T16217 | T16216 | arg2Of | μLCRβ,of |
R11231 | T16217 | T16218 | arg1Of | μLCRβ,9.3 |
R11232 | T16221 | T16220 | arg1Of | LCR,micro |
R11233 | T16221 | T16222 | arg1Of | LCR,; |
R11234 | T16222 | T16219 | arg2Of | ;,( |
R11235 | T16224 | T16222 | arg2Of | 31,; |
R11236 | T16224 | T16223 | arg2Of | 31,[ |
R11237 | T16225 | T16223 | arg3Of | ],[ |
R11238 | T16226 | T16219 | arg3Of | ),( |
R11239 | T16229 | T16227 | arg2Of | inserted,was |
R11240 | T16229 | T16228 | arg1Of | inserted,then |
R11241 | T16229 | T16230 | arg1Of | inserted,upstream |
R11242 | T16229 | T16235 | arg1Of | inserted,in |
R11243 | T16229 | T16241 | arg1Of | inserted,"," |
R11244 | T16229 | T16242 | modOf | inserted,resulting |
R11245 | T16230 | T16231 | arg1Of | upstream,of |
R11246 | T16234 | T16231 | arg2Of | promoter,of |
R11247 | T16234 | T16232 | arg1Of | promoter,the |
R11248 | T16234 | T16233 | arg1Of | promoter,ɛy |
R11249 | T16239 | T16238 | arg1Of | Basic,pGL3 |
R11250 | T16240 | T16235 | arg2Of | plasmid,in |
R11251 | T16240 | T16236 | arg1Of | plasmid,the |
R11252 | T16240 | T16237 | arg1Of | plasmid,above |
R11253 | T16240 | T16239 | arg1Of | plasmid,Basic |
R11254 | T16242 | T16243 | arg1Of | resulting,in |
R11255 | T16246 | T16243 | arg2Of | construct,in |
R11256 | T16246 | T16244 | arg1Of | construct,a |
R11257 | T16246 | T16245 | arg1Of | construct,reporter |
R11258 | T16246 | T16247 | arg2Of | construct,in |
R11259 | T16246 | T16248 | arg1Of | construct,which |
R11260 | T16250 | T16249 | arg1Of | expression,luciferase |
R11261 | T16250 | T16251 | arg1Of | expression,is |
R11262 | T16250 | T16252 | arg2Of | expression,driven |
R11263 | T16252 | T16247 | arg1Of | driven,in |
R11264 | T16252 | T16251 | arg2Of | driven,is |
R11265 | T16256 | T16252 | arg1Of | promoter,driven |
R11266 | T16256 | T16253 | arg2Of | promoter,by |
R11267 | T16256 | T16254 | arg1Of | promoter,the |
R11268 | T16256 | T16255 | arg1Of | promoter,ɛy |
R11269 | T16258 | T16257 | arg1Of | series,A |
R11270 | T16258 | T16259 | arg1Of | series,of |
R11271 | T16258 | T16266 | arg1Of | series,were |
R11272 | T16258 | T16267 | arg2Of | series,generated |
R11273 | T16261 | T16259 | arg2Of | constructs,of |
R11274 | T16261 | T16260 | arg1Of | constructs,deletion |
R11275 | T16261 | T16262 | arg1Of | constructs,of |
R11276 | T16265 | T16262 | arg2Of | promoter,of |
R11277 | T16265 | T16263 | arg1Of | promoter,the |
R11278 | T16265 | T16264 | arg1Of | promoter,ɛy |
R11279 | T16267 | T16266 | arg2Of | generated,were |
R11280 | T16267 | T16268 | arg1Of | generated,similarly |
R11281 | T16270 | T16269 | arg1Of | primers,Forward |
R11282 | T16270 | T16271 | arg1Of | primers,with |
R11283 | T16270 | T16275 | arg1Of | primers,include |
R11284 | T16274 | T16271 | arg2Of | site,with |
R11285 | T16274 | T16272 | arg1Of | site,an |
R11286 | T16274 | T16273 | arg1Of | site,XhoI |
R11287 | T16275 | T16276 | arg1Of | include,: |
R11288 | T16277 | T16275 | arg2Of | MHB1457,include |
R11289 | T16277 | T16278 | arg1Of | MHB1457,"," |
R11290 | T16277 | T16285 | arg1Of | MHB1457,; |
R11291 | T16279 | T16278 | arg2Of | 5′CCGCTCGAGTGCTAGGCAAACACTCA3′,"," |
R11292 | T16279 | T16280 | arg1Of | 5′CCGCTCGAGTGCTAGGCAAACACTCA3′,( |
R11293 | T16283 | T16280 | arg2Of | −2052,( |
R11294 | T16283 | T16281 | arg1Of | −2052,−2077 |
R11295 | T16283 | T16282 | arg1Of | −2052,to |
R11296 | T16284 | T16280 | arg3Of | ),( |
R11297 | T16286 | T16285 | arg2Of | MHB1503,; |
R11298 | T16286 | T16287 | arg1Of | MHB1503,"," |
R11299 | T16286 | T16294 | arg1Of | MHB1503,; |
R11300 | T16288 | T16287 | arg2Of | 5′CCGCTCGAGTCTCTACACTGTCACTCCCTG3′,"," |
R11301 | T16288 | T16289 | arg1Of | 5′CCGCTCGAGTCTCTACACTGTCACTCCCTG3′,( |
R11302 | T16292 | T16289 | arg2Of | −605,( |
R11303 | T16292 | T16290 | arg1Of | −605,−634 |
R11304 | T16292 | T16291 | arg1Of | −605,to |
R11305 | T16293 | T16289 | arg3Of | ),( |
R11306 | T16295 | T16294 | arg2Of | MHB1505,; |
R11307 | T16295 | T16296 | arg1Of | MHB1505,"," |
R11308 | T16295 | T16303 | arg1Of | MHB1505,; |
R11309 | T16297 | T16296 | arg2Of | 5′CCGCTCGAGGGAGCCAAAAAAAGAATGC3′,"," |
R11310 | T16297 | T16298 | arg1Of | 5′CCGCTCGAGGGAGCCAAAAAAAGAATGC3′,( |
R11311 | T16301 | T16298 | arg2Of | −169,( |
R11312 | T16301 | T16299 | arg1Of | −169,−197 |
R11313 | T16301 | T16300 | arg1Of | −169,to |
R11314 | T16302 | T16298 | arg3Of | ),( |
R11315 | T16304 | T16303 | arg2Of | MHB1506,; |
R11316 | T16304 | T16305 | arg1Of | MHB1506,"," |
R11317 | T16304 | T16312 | arg1Of | MHB1506,; |
R11318 | T16306 | T16305 | arg2Of | 5′CCGCTCGAGCTGACCAATGGCTTCAAAG3′,"," |
R11319 | T16306 | T16307 | arg1Of | 5′CCGCTCGAGCTGACCAATGGCTTCAAAG3′,( |
R11320 | T16310 | T16307 | arg2Of | −58,( |
R11321 | T16310 | T16308 | arg1Of | −58,−85 |
R11322 | T16310 | T16309 | arg1Of | −58,to |
R11323 | T16311 | T16307 | arg3Of | ),( |
R11324 | T16313 | T16314 | arg1Of | MHB1532,"," |
R11325 | T16313 | T16322 | arg1Of | MHB1532,and |
R11326 | T16315 | T16314 | arg2Of | 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGA3′,"," |
R11327 | T16315 | T16316 | arg1Of | 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGA3′,( |
R11328 | T16319 | T16316 | arg2Of | −34,( |
R11329 | T16319 | T16317 | arg1Of | −34,−63 |
R11330 | T16319 | T16318 | arg1Of | −34,to |
R11331 | T16320 | T16316 | arg3Of | ),( |
R11332 | T16322 | T16312 | arg2Of | and,; |
R11333 | T16322 | T16321 | arg1Of | and,; |
R11334 | T16323 | T16322 | arg2Of | MHB1507,and |
R11335 | T16323 | T16324 | arg1Of | MHB1507,"," |
R11336 | T16326 | T16324 | arg2Of | 3′,"," |
R11337 | T16326 | T16325 | arg1Of | 3′,5′CCGCTCGAGGTCTGCGAAGAATAAAAGGC |
R11338 | T16326 | T16327 | arg1Of | 3′,( |
R11339 | T16330 | T16327 | arg2Of | −9,( |
R11340 | T16330 | T16328 | arg1Of | −9,−37 |
R11341 | T16330 | T16329 | arg1Of | −9,to |
R11342 | T16331 | T16327 | arg3Of | ),( |
R11343 | T16334 | T16332 | arg1Of | primers,All |
R11344 | T16334 | T16333 | arg1Of | primers,forward |
R11345 | T16334 | T16335 | arg1Of | primers,were |
R11346 | T16334 | T16336 | arg2Of | primers,used |
R11347 | T16336 | T16335 | arg2Of | used,were |
R11348 | T16336 | T16337 | arg1Of | used,in |
R11349 | T16336 | T16345 | arg1Of | used,: |
R11350 | T16336 | T16346 | arg1Of | used,MHB1477 |
R11351 | T16338 | T16337 | arg2Of | combination,in |
R11352 | T16338 | T16339 | arg1Of | combination,with |
R11353 | T16344 | T16339 | arg2Of | site,with |
R11354 | T16344 | T16340 | arg1Of | site,the |
R11355 | T16344 | T16341 | arg1Of | site,reverse |
R11356 | T16344 | T16342 | arg1Of | site,primer |
R11357 | T16344 | T16343 | arg1Of | site,HindIII |
R11358 | T16346 | T16347 | arg1Of | MHB1477,"," |
R11359 | T16348 | T16347 | arg2Of | 5′CGGAAGCTTGGGAGGTTGCTGGTGA3′,"," |
R11360 | T16348 | T16349 | arg1Of | 5′CGGAAGCTTGGGAGGTTGCTGGTGA3′,( |
R11361 | T16352 | T16349 | arg2Of | +20,( |
R11362 | T16352 | T16350 | arg1Of | +20,+45 |
R11363 | T16352 | T16351 | arg1Of | +20,to |
R11364 | T16353 | T16349 | arg3Of | ),( |
bionlp-st-ge-2016-test-proteins
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16048 | 1041-1043 | Protein | denotes | ɛy |
T16047 | 989-991 | Protein | denotes | ɛy |
T16046 | 950-960 | Protein | denotes | luciferase |
T16045 | 862-864 | Protein | denotes | ɛy |
T16044 | 693-703 | Protein | denotes | luciferase |
T16043 | 648-650 | Protein | denotes | ɛy |
T16042 | 359-367 | Protein | denotes | ɛ globin |
T16041 | 249-250 | Protein | denotes | ɛ |
T16040 | 148-157 | Protein | denotes | ɛy globin |
T16039 | 92-94 | Protein | denotes | ɛy |
T16038 | 4-6 | Protein | denotes | ɛy |
bionlp-st-ge-2016-uniprot
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16445 | 950-960 | http://www.uniprot.org/uniprot/P08659 | denotes | luciferase |
T16444 | 693-703 | http://www.uniprot.org/uniprot/P08659 | denotes | luciferase |
GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16013 | 458-473 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcriptional |
T16012 | 428-441 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
T16011 | 251-265 | http://purl.obolibrary.org/obo/GO_0016458 | denotes | gene silencing |
T16010 | 361-367 | http://purl.obolibrary.org/obo/GO_0005344 | denotes | globin |
T16009 | 151-157 | http://purl.obolibrary.org/obo/GO_0005344 | denotes | globin |
GO-MF
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16055 | 361-367 | http://purl.obolibrary.org/obo/GO_0005344 | denotes | globin |
T16054 | 151-157 | http://purl.obolibrary.org/obo/GO_0005344 | denotes | globin |
sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16004 | 1473-1608 | Sentence | denotes | All forward primers were used in combination with the reverse primer HindIII site: MHB1477, 5′CGGAAGCTTGGGAGGTTGCTGGTGA3′ (+45 to +20). |
T16003 | 1079-1472 | Sentence | denotes | Forward primers with an XhoI site include: MHB1457, 5′CCGCTCGAGTGCTAGGCAAACACTCA3′ (−2077 to −2052); MHB1503, 5′CCGCTCGAGTCTCTACACTGTCACTCCCTG3′ (−634 to −605); MHB1505, 5′CCGCTCGAGGGAGCCAAAAAAAGAATGC3′ (−197 to −169); MHB1506, 5′CCGCTCGAGCTGACCAATGGCTTCAAAG3′ (−85 to −58); MHB1532, 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGA3′ (−63 to −34); and MHB1507, 5′CCGCTCGAGGTCTGCGAAGAATAAAAGGC 3′ (−37 to −9). |
T16002 | 1002-1078 | Sentence | denotes | A series of deletion constructs of the ɛy promoter were generated similarly. |
T16001 | 769-1001 | Sentence | denotes | A 2.5-kb SstI/XhoI fragment of μLCRβ 9.3 (micro LCR; [31]) was then inserted upstream of the ɛy promoter in the above pGL3 Basic plasmid, resulting in a reporter construct in which luciferase expression is driven by the ɛy promoter. |
T16000 | 571-768 | Sentence | denotes | The PCR primers contained XhoI and HindIII sites that were used to clone the ɛy promoter fragment upstream of the firefly luciferase gene in pGL3 Basic (Promega, Madison, Wisconsin, United States). |
T15999 | 454-570 | Sentence | denotes | The transcriptional start site is based on the longest cDNA in the Fantom (Functional Annotation of Mouse) database. |
T15998 | 388-453 | Sentence | denotes | Nucleotide numbering is relative to the transcription start site. |
T15997 | 114-387 | Sentence | denotes | A 2.2-kb fragment upstream of the ɛy globin initiation codon (ATG) was used, because it has been shown that all sequences required for ɛ gene silencing are located within a 3.7-kb EcoRI fragment containing about 2 kb of sequence upstream of the ɛ globin gene cap site [50]. |
T15996 | 0-113 | Sentence | denotes | The ɛy promoter deletion reporter plasmid (E-luc) was generated by PCR amplification of the ɛy proximal promoter. |
T252 | 0-113 | Sentence | denotes | The ɛy promoter deletion reporter plasmid (E-luc) was generated by PCR amplification of the ɛy proximal promoter. |
T253 | 114-387 | Sentence | denotes | A 2.2-kb fragment upstream of the ɛy globin initiation codon (ATG) was used, because it has been shown that all sequences required for ɛ gene silencing are located within a 3.7-kb EcoRI fragment containing about 2 kb of sequence upstream of the ɛ globin gene cap site [50]. |
T254 | 388-453 | Sentence | denotes | Nucleotide numbering is relative to the transcription start site. |
T255 | 454-570 | Sentence | denotes | The transcriptional start site is based on the longest cDNA in the Fantom (Functional Annotation of Mouse) database. |
T256 | 571-768 | Sentence | denotes | The PCR primers contained XhoI and HindIII sites that were used to clone the ɛy promoter fragment upstream of the firefly luciferase gene in pGL3 Basic (Promega, Madison, Wisconsin, United States). |
T257 | 769-1001 | Sentence | denotes | A 2.5-kb SstI/XhoI fragment of μLCRβ 9.3 (micro LCR; [31]) was then inserted upstream of the ɛy promoter in the above pGL3 Basic plasmid, resulting in a reporter construct in which luciferase expression is driven by the ɛy promoter. |
T258 | 1002-1078 | Sentence | denotes | A series of deletion constructs of the ɛy promoter were generated similarly. |
T259 | 1079-1472 | Sentence | denotes | Forward primers with an XhoI site include: MHB1457, 5′CCGCTCGAGTGCTAGGCAAACACTCA3′ (−2077 to −2052); MHB1503, 5′CCGCTCGAGTCTCTACACTGTCACTCCCTG3′ (−634 to −605); MHB1505, 5′CCGCTCGAGGGAGCCAAAAAAAGAATGC3′ (−197 to −169); MHB1506, 5′CCGCTCGAGCTGACCAATGGCTTCAAAG3′ (−85 to −58); MHB1532, 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGA3′ (−63 to −34); and MHB1507, 5′CCGCTCGAGGTCTGCGAAGAATAAAAGGC 3′ (−37 to −9). |
T260 | 1473-1608 | Sentence | denotes | All forward primers were used in combination with the reverse primer HindIII site: MHB1477, 5′CGGAAGCTTGGGAGGTTGCTGGTGA3′ (+45 to +20). |
simple1
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16067 | 1041-1043 | Protein | denotes | ɛy |
T16066 | 989-991 | Protein | denotes | ɛy |
T16065 | 950-960 | Protein | denotes | luciferase |
T16064 | 862-864 | Protein | denotes | ɛy |
T16063 | 693-703 | Protein | denotes | luciferase |
T16062 | 648-650 | Protein | denotes | ɛy |
T16061 | 359-367 | Protein | denotes | ɛ globin |
T16060 | 249-250 | Protein | denotes | ɛ |
T16059 | 148-157 | Protein | denotes | ɛy globin |
T16058 | 92-94 | Protein | denotes | ɛy |
T16057 | 4-6 | Protein | denotes | ɛy |
BioNLP16_DUT
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T17094 | 975-981 | Positive_regulation | denotes | driven |
T17093 | 961-971 | Gene_expression | denotes | expression |
T17092 | 256-265 | Negative_regulation | denotes | silencing |
T17086 | 1041-1043 | Protein | denotes | ɛy |
T17085 | 950-960 | Protein | denotes | luciferase |
T17084 | 862-864 | Protein | denotes | ɛy |
T17083 | 989-991 | Protein | denotes | ɛy |
T17082 | 693-703 | Protein | denotes | luciferase |
T17081 | 648-650 | Protein | denotes | ɛy |
T17080 | 359-367 | Protein | denotes | ɛ globin |
T17079 | 249-250 | Protein | denotes | ɛ |
T17078 | 148-157 | Protein | denotes | ɛy globin |
T17077 | 92-94 | Protein | denotes | ɛy |
T17076 | 4-6 | Protein | denotes | ɛy |
R11932 | T17079 | T17092 | themeOf | ɛ,silencing |
R11933 | T17085 | T17093 | themeOf | luciferase,expression |
R11935 | T17093 | T17094 | themeOf | expression,driven |
BioNLP16_Messiy
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16456 | 648-650 | Protein | denotes | ɛy |
T16455 | 359-367 | Protein | denotes | ɛ globin |
T16454 | 249-250 | Protein | denotes | ɛ |
T16453 | 148-157 | Protein | denotes | ɛy globin |
T16452 | 92-94 | Protein | denotes | ɛy |
T16451 | 4-6 | Protein | denotes | ɛy |
T16470 | 961-971 | Gene_expression | denotes | expression |
T16469 | 236-244 | Positive_regulation | denotes | required |
T16468 | 256-265 | Negative_regulation | denotes | silencing |
T16467 | 16-24 | Negative_regulation | denotes | deletion |
T16461 | 1041-1043 | Protein | denotes | ɛy |
T16460 | 950-960 | Protein | denotes | luciferase |
T16459 | 862-864 | Protein | denotes | ɛy |
T16458 | 989-991 | Protein | denotes | ɛy |
T16457 | 693-703 | Protein | denotes | luciferase |
R11455 | T16451 | T16467 | themeOf | ɛy,deletion |
R11456 | T16454 | T16468 | themeOf | ɛ,silencing |
R11457 | T16460 | T16470 | themeOf | luciferase,expression |
R11460 | T16468 | T16469 | themeOf | silencing,required |
DLUT931
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16540 | 961-971 | Gene_expression | denotes | expression |
T16539 | 236-244 | Positive_regulation | denotes | required |
T16538 | 256-265 | Negative_regulation | denotes | silencing |
T16537 | 16-24 | Negative_regulation | denotes | deletion |
T16531 | 1041-1043 | Protein | denotes | ɛy |
T16530 | 950-960 | Protein | denotes | luciferase |
T16529 | 862-864 | Protein | denotes | ɛy |
T16528 | 989-991 | Protein | denotes | ɛy |
T16527 | 693-703 | Protein | denotes | luciferase |
T16526 | 648-650 | Protein | denotes | ɛy |
T16525 | 359-367 | Protein | denotes | ɛ globin |
T16524 | 249-250 | Protein | denotes | ɛ |
T16523 | 148-157 | Protein | denotes | ɛy globin |
T16522 | 92-94 | Protein | denotes | ɛy |
T16521 | 4-6 | Protein | denotes | ɛy |
R11469 | T16521 | T16537 | themeOf | ɛy,deletion |
R11470 | T16524 | T16538 | themeOf | ɛ,silencing |
R11471 | T16530 | T16540 | themeOf | luciferase,expression |
R11474 | T16538 | T16539 | themeOf | silencing,required |
bionlp-st-ge-2016-test-ihmc
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T17055 | 92-94 | Protein | denotes | ɛy |
T17053 | 717-767 | Protein | denotes | Basic (Promega, Madison, Wisconsin, United States) |
T17052 | 85-112 | Entity | denotes | of the ɛy proximal promoter |
T17051 | 377-386 | Entity | denotes | site [50] |
T17050 | 151-157 | Protein | denotes | globin |
T17048 | 361-367 | Protein | denotes | globin |
T17047 | 1034-1052 | Entity | denotes | of the ɛy promoter |
T17046 | 67-70 | Protein | denotes | PCR |
T17045 | 7-15 | Entity | denotes | promoter |
T17044 | 648-650 | Protein | denotes | ɛy |
T17043 | 597-601 | Protein | denotes | XhoI |
T17041 | 989-991 | Protein | denotes | ɛy |
T17040 | 862-864 | Protein | denotes | ɛy |
T17038 | 644-668 | Entity | denotes | the ɛy promoter fragment |
T17036 | 4-6 | Protein | denotes | ɛy |
T17035 | 575-578 | Protein | denotes | PCR |
T17034 | 388-398 | Entity | denotes | Nucleotide |
T17033 | 355-376 | Protein | denotes | the ɛ globin gene cap |
T17032 | 285-330 | Entity | denotes | a 3.7-kb EcoRI fragment containing about 2 kb |
T17029 | 644-668 | Entity | denotes | the ɛy promoter fragment |
T17071 | 144-180 | Positive_regulation | denotes | the ɛy globin initiation codon (ATG) |
T17070 | 685-703 | Protein | denotes | firefly luciferase |
T17069 | 681-708 | Protein | denotes | the firefly luciferase gene |
T17068 | 497-513 | Entity | denotes | the longest cDNA |
T17067 | 1523-1554 | Entity | denotes | the reverse primer HindIII site |
T17066 | 1100-1112 | Entity | denotes | an XhoI site |
T17065 | 982-1000 | Entity | denotes | by the ɛy promoter |
T17064 | 249-265 | Protein | denotes | ɛ gene silencing |
T17063 | 359-360 | Protein | denotes | ɛ |
T17062 | 1103-1107 | Protein | denotes | XhoI |
T17061 | 811-826 | Protein | denotes | micro LCR; [31] |
T17058 | 858-886 | Entity | denotes | the ɛy promoter in the above |
T17057 | 148-150 | Protein | denotes | ɛy |
T17056 | 606-619 | Entity | denotes | HindIII sites |
R11924 | T17038 | T17044 | partOf | the ɛy promoter fragment,ɛy |
R11928 | T17050 | T17071 | themeOf | globin,the ɛy globin initiation codon (ATG) |
R11929 | T17052 | T17055 | partOf | of the ɛy proximal promoter,ɛy |
R11930 | T17058 | T17040 | partOf | the ɛy promoter in the above,ɛy |
R11931 | T17065 | T17041 | partOf | by the ɛy promoter,ɛy |
bionlp-st-ge-2016-spacy-parsed
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16885 | 1607-1608 | . | denotes | . |
T16884 | 1606-1607 | -RRB- | denotes | ) |
T16873 | 1554-1555 | : | denotes | : |
T16872 | 1550-1554 | NN | denotes | site |
T16871 | 1542-1549 | NNP | denotes | HindIII |
T16870 | 1535-1541 | NN | denotes | primer |
T16869 | 1527-1534 | NN | denotes | reverse |
T16868 | 1523-1526 | DT | denotes | the |
T16867 | 1518-1522 | IN | denotes | with |
T16866 | 1506-1517 | NN | denotes | combination |
T16865 | 1503-1505 | IN | denotes | in |
T16864 | 1498-1502 | VBN | denotes | used |
T16863 | 1493-1497 | VBD | denotes | were |
T16862 | 1485-1492 | NNS | denotes | primers |
T16861 | 1477-1484 | RB | denotes | forward |
T16860 | 1473-1476 | DT | denotes | All |
T16859 | 1471-1472 | . | denotes | . |
T16858 | 1470-1471 | -RRB- | denotes | ) |
T16857 | 1469-1470 | CD | denotes | 9 |
T16856 | 1468-1469 | CD | denotes | − |
T16855 | 1465-1467 | TO | denotes | to |
T16854 | 1462-1464 | CD | denotes | 37 |
T16853 | 1461-1462 | FW | denotes | − |
T16852 | 1460-1461 | -LRB- | denotes | ( |
T16851 | 1458-1459 | NN | denotes | ′ |
T16850 | 1457-1458 | CD | denotes | 3 |
T16849 | 1427-1456 | NNP | denotes | CCGCTCGAGGTCTGCGAAGAATAAAAGGC |
T16848 | 1426-1427 | NN | denotes | ′ |
T16847 | 1425-1426 | CD | denotes | 5 |
T16846 | 1423-1424 | , | denotes | , |
T16845 | 1416-1423 | NNP | denotes | MHB1507 |
T16844 | 1412-1415 | CC | denotes | and |
T16843 | 1410-1411 | : | denotes | ; |
T16842 | 1409-1410 | -RRB- | denotes | ) |
T16841 | 1407-1409 | CD | denotes | 34 |
T16840 | 1406-1407 | CD | denotes | − |
T16839 | 1403-1405 | TO | denotes | to |
T16838 | 1400-1402 | CD | denotes | 63 |
T16837 | 1399-1400 | FW | denotes | − |
T16836 | 1398-1399 | -LRB- | denotes | ( |
T16835 | 1396-1397 | NN | denotes | ′ |
T16834 | 1365-1396 | CD | denotes | CCGCTCGAGAATGCAGAACAAAGGGTCAGA3 |
T16833 | 1364-1365 | NN | denotes | ′ |
T16832 | 1363-1364 | CD | denotes | 5 |
T16831 | 1361-1362 | , | denotes | , |
T16830 | 1354-1361 | NNP | denotes | MHB1532 |
T16829 | 1352-1353 | : | denotes | ; |
T16828 | 1351-1352 | -RRB- | denotes | ) |
T16827 | 1349-1351 | CD | denotes | 58 |
T16826 | 1348-1349 | CD | denotes | − |
T16825 | 1345-1347 | TO | denotes | to |
T16824 | 1342-1344 | CD | denotes | 85 |
T16823 | 1341-1342 | FW | denotes | − |
T16822 | 1340-1341 | -LRB- | denotes | ( |
T16821 | 1338-1339 | NN | denotes | ′ |
T16820 | 1309-1338 | CD | denotes | CCGCTCGAGCTGACCAATGGCTTCAAAG3 |
T16819 | 1308-1309 | NN | denotes | ′ |
T16818 | 1307-1308 | CD | denotes | 5 |
T16817 | 1305-1306 | , | denotes | , |
T16816 | 1298-1305 | NNP | denotes | MHB1506 |
T16815 | 1296-1297 | : | denotes | ; |
T16814 | 1295-1296 | -RRB- | denotes | ) |
T16813 | 1292-1295 | CD | denotes | 169 |
T16812 | 1291-1292 | CD | denotes | − |
T16811 | 1288-1290 | TO | denotes | to |
T16810 | 1284-1287 | CD | denotes | 197 |
T16809 | 1283-1284 | FW | denotes | − |
T16808 | 1282-1283 | -LRB- | denotes | ( |
T16807 | 1280-1281 | NN | denotes | ′ |
T16806 | 1251-1280 | CD | denotes | CCGCTCGAGGGAGCCAAAAAAAGAATGC3 |
T16805 | 1250-1251 | NN | denotes | ′ |
T16804 | 1249-1250 | CD | denotes | 5 |
T16803 | 1247-1248 | , | denotes | , |
T16802 | 1240-1247 | NNP | denotes | MHB1505 |
T16801 | 1238-1239 | : | denotes | ; |
T16800 | 1237-1238 | -RRB- | denotes | ) |
T16799 | 1234-1237 | CD | denotes | 605 |
T16798 | 1233-1234 | CD | denotes | − |
T16797 | 1230-1232 | TO | denotes | to |
T16796 | 1226-1229 | CD | denotes | 634 |
T16795 | 1225-1226 | FW | denotes | − |
T16794 | 1224-1225 | -LRB- | denotes | ( |
T16793 | 1222-1223 | NN | denotes | ′ |
T16792 | 1191-1222 | CD | denotes | CCGCTCGAGTCTCTACACTGTCACTCCCTG3 |
T16791 | 1190-1191 | NN | denotes | ′ |
T16790 | 1189-1190 | CD | denotes | 5 |
T16789 | 1187-1188 | , | denotes | , |
T16788 | 1180-1187 | NNP | denotes | MHB1503 |
T16787 | 1178-1179 | : | denotes | ; |
T16786 | 1177-1178 | -RRB- | denotes | ) |
T16785 | 1173-1177 | CD | denotes | 2052 |
T16784 | 1172-1173 | CD | denotes | − |
T16783 | 1169-1171 | TO | denotes | to |
T16782 | 1164-1168 | CD | denotes | 2077 |
T16781 | 1163-1164 | FW | denotes | − |
T16780 | 1162-1163 | -LRB- | denotes | ( |
T16779 | 1160-1161 | NN | denotes | ′ |
T16778 | 1133-1160 | CD | denotes | CCGCTCGAGTGCTAGGCAAACACTCA3 |
T16777 | 1132-1133 | NN | denotes | ′ |
T16776 | 1131-1132 | CD | denotes | 5 |
T16775 | 1129-1130 | , | denotes | , |
T16774 | 1122-1129 | NNP | denotes | MHB1457 |
T16773 | 1120-1121 | : | denotes | : |
T16772 | 1113-1120 | VBP | denotes | include |
T16771 | 1108-1112 | NN | denotes | site |
T16770 | 1103-1107 | NNP | denotes | XhoI |
T16769 | 1100-1102 | DT | denotes | an |
T16768 | 1095-1099 | IN | denotes | with |
T16767 | 1087-1094 | NNS | denotes | primers |
T16766 | 1079-1086 | RB | denotes | Forward |
T16765 | 1077-1078 | . | denotes | . |
T16764 | 1068-1077 | RB | denotes | similarly |
T16763 | 1058-1067 | VBN | denotes | generated |
T16762 | 1053-1057 | VBD | denotes | were |
T16761 | 1044-1052 | NN | denotes | promoter |
T16760 | 1041-1043 | JJ | denotes | ɛy |
T16759 | 1037-1040 | DT | denotes | the |
T16758 | 1034-1036 | IN | denotes | of |
T16757 | 1023-1033 | NNS | denotes | constructs |
T16756 | 1014-1022 | NN | denotes | deletion |
T16755 | 1011-1013 | IN | denotes | of |
T16754 | 1004-1010 | NN | denotes | series |
T16753 | 1002-1003 | DT | denotes | A |
T16752 | 1000-1001 | . | denotes | . |
T16751 | 992-1000 | NN | denotes | promoter |
T16750 | 989-991 | JJ | denotes | ɛy |
T16749 | 985-988 | DT | denotes | the |
T16748 | 982-984 | IN | denotes | by |
T16747 | 975-981 | VBN | denotes | driven |
T16746 | 972-974 | VBZ | denotes | is |
T16745 | 961-971 | NN | denotes | expression |
T16744 | 950-960 | NN | denotes | luciferase |
T16743 | 944-949 | WDT | denotes | which |
T16742 | 941-943 | IN | denotes | in |
T16741 | 931-940 | VB | denotes | construct |
T16740 | 922-930 | NN | denotes | reporter |
T16739 | 920-921 | DT | denotes | a |
T16738 | 917-919 | IN | denotes | in |
T16737 | 907-916 | VBG | denotes | resulting |
T16736 | 905-906 | , | denotes | , |
T16735 | 898-905 | NN | denotes | plasmid |
T16734 | 892-897 | JJ | denotes | Basic |
T16733 | 887-891 | JJ | denotes | pGL3 |
T16732 | 881-886 | JJ | denotes | above |
T16731 | 877-880 | DT | denotes | the |
T16730 | 874-876 | IN | denotes | in |
T16729 | 865-873 | NN | denotes | promoter |
T16728 | 862-864 | JJ | denotes | ɛy |
T16727 | 858-861 | DT | denotes | the |
T16726 | 855-857 | IN | denotes | of |
T16725 | 846-854 | RB | denotes | upstream |
T16724 | 837-845 | VBN | denotes | inserted |
T16723 | 832-836 | RB | denotes | then |
T16722 | 828-831 | VBD | denotes | was |
T16721 | 826-827 | -RRB- | denotes | ) |
T16720 | 825-826 | NNP | denotes | ] |
T16719 | 823-825 | CD | denotes | 31 |
T16718 | 822-823 | NNP | denotes | [ |
T16717 | 820-821 | : | denotes | ; |
T16716 | 817-820 | NNP | denotes | LCR |
T16715 | 811-816 | NN | denotes | micro |
T16714 | 810-811 | -LRB- | denotes | ( |
T16713 | 806-809 | CD | denotes | 9.3 |
T16712 | 800-805 | NNP | denotes | μLCRβ |
T16711 | 797-799 | IN | denotes | of |
T16710 | 788-796 | NN | denotes | fragment |
T16709 | 778-787 | NNP | denotes | SstI/XhoI |
T16708 | 771-777 | JJ | denotes | 2.5-kb |
T16707 | 769-770 | DT | denotes | A |
T16706 | 767-768 | . | denotes | . |
T16705 | 766-767 | -RRB- | denotes | ) |
T16704 | 760-766 | NNPS | denotes | States |
T16703 | 753-759 | NNP | denotes | United |
T16702 | 751-752 | , | denotes | , |
T16701 | 742-751 | NNP | denotes | Wisconsin |
T16700 | 740-741 | , | denotes | , |
T16699 | 733-740 | NNP | denotes | Madison |
T16698 | 731-732 | , | denotes | , |
T16697 | 724-731 | NNP | denotes | Promega |
T16696 | 723-724 | -LRB- | denotes | ( |
T16695 | 717-722 | NNP | denotes | Basic |
T16694 | 712-716 | NNP | denotes | pGL3 |
T16693 | 709-711 | IN | denotes | in |
T16692 | 704-708 | NN | denotes | gene |
T16691 | 693-703 | NN | denotes | luciferase |
T16690 | 685-692 | JJ | denotes | firefly |
T16689 | 681-684 | DT | denotes | the |
T16688 | 678-680 | IN | denotes | of |
T16687 | 669-677 | RB | denotes | upstream |
T16686 | 660-668 | NN | denotes | fragment |
T16685 | 651-659 | NN | denotes | promoter |
T16684 | 648-650 | JJ | denotes | ɛy |
T16683 | 644-647 | DT | denotes | the |
T16682 | 638-643 | VB | denotes | clone |
T16681 | 635-637 | TO | denotes | to |
T16680 | 630-634 | VBN | denotes | used |
T16679 | 625-629 | VBD | denotes | were |
T16678 | 620-624 | WDT | denotes | that |
T16677 | 614-619 | NNS | denotes | sites |
T16676 | 606-613 | NNP | denotes | HindIII |
T16675 | 602-605 | CC | denotes | and |
T16674 | 597-601 | NNP | denotes | XhoI |
T16673 | 587-596 | VBD | denotes | contained |
T16672 | 579-586 | NNS | denotes | primers |
T16671 | 575-578 | NNP | denotes | PCR |
T16670 | 571-574 | DT | denotes | The |
T16669 | 569-570 | . | denotes | . |
T16668 | 561-569 | NN | denotes | database |
T16667 | 559-560 | -RRB- | denotes | ) |
T16666 | 554-559 | NNP | denotes | Mouse |
T16665 | 551-553 | IN | denotes | of |
T16664 | 540-550 | NNP | denotes | Annotation |
T16663 | 529-539 | NNP | denotes | Functional |
T16662 | 528-529 | -LRB- | denotes | ( |
T16661 | 521-527 | NNP | denotes | Fantom |
T16660 | 517-520 | DT | denotes | the |
T16659 | 514-516 | IN | denotes | in |
T16658 | 509-513 | NN | denotes | cDNA |
T16635 | 382-383 | NNP | denotes | [ |
T16634 | 377-381 | NN | denotes | site |
T16633 | 373-376 | NN | denotes | cap |
T16632 | 368-372 | NN | denotes | gene |
T16631 | 361-367 | NN | denotes | globin |
T16630 | 359-360 | NN | denotes | ɛ |
T16629 | 355-358 | DT | denotes | the |
T16628 | 352-354 | IN | denotes | of |
T16627 | 343-351 | RB | denotes | upstream |
T16626 | 334-342 | NN | denotes | sequence |
T16625 | 331-333 | IN | denotes | of |
T16624 | 328-330 | NN | denotes | kb |
T16623 | 326-327 | CD | denotes | 2 |
T16622 | 320-325 | IN | denotes | about |
T16621 | 309-319 | VBG | denotes | containing |
T16620 | 300-308 | NN | denotes | fragment |
T16619 | 294-299 | NNP | denotes | EcoRI |
T16618 | 287-293 | JJ | denotes | 3.7-kb |
T16617 | 285-286 | DT | denotes | a |
T16616 | 278-284 | IN | denotes | within |
T16615 | 270-277 | VBN | denotes | located |
T16614 | 266-269 | VBP | denotes | are |
T16613 | 256-265 | VBG | denotes | silencing |
T16612 | 251-255 | NN | denotes | gene |
T16611 | 249-250 | NN | denotes | ɛ |
T16610 | 245-248 | IN | denotes | for |
T16609 | 236-244 | VBN | denotes | required |
T16608 | 226-235 | NNS | denotes | sequences |
T16607 | 222-225 | DT | denotes | all |
T16606 | 217-221 | IN | denotes | that |
T16605 | 211-216 | VBN | denotes | shown |
T16604 | 206-210 | VBN | denotes | been |
T16603 | 202-205 | VBZ | denotes | has |
T16602 | 199-201 | PRP | denotes | it |
T16601 | 191-198 | IN | denotes | because |
T16600 | 189-190 | , | denotes | , |
T16599 | 185-189 | VBN | denotes | used |
T16598 | 181-184 | VBD | denotes | was |
T16597 | 179-180 | -RRB- | denotes | ) |
T16596 | 176-179 | NNP | denotes | ATG |
T16595 | 175-176 | -LRB- | denotes | ( |
T16594 | 169-174 | NN | denotes | codon |
T16593 | 158-168 | NN | denotes | initiation |
T16592 | 151-157 | NN | denotes | globin |
T16591 | 148-150 | JJ | denotes | ɛy |
T16590 | 144-147 | DT | denotes | the |
T16589 | 141-143 | IN | denotes | of |
T16588 | 132-140 | RB | denotes | upstream |
T16587 | 123-131 | NN | denotes | fragment |
T16586 | 116-122 | JJ | denotes | 2.2-kb |
T16585 | 114-115 | DT | denotes | A |
T16584 | 112-113 | . | denotes | . |
T16583 | 104-112 | NN | denotes | promoter |
T16582 | 95-103 | JJ | denotes | proximal |
T16581 | 92-94 | JJ | denotes | ɛy |
T16580 | 88-91 | DT | denotes | the |
T16579 | 85-87 | IN | denotes | of |
T16578 | 71-84 | NN | denotes | amplification |
T16577 | 67-70 | NNP | denotes | PCR |
T16576 | 64-66 | IN | denotes | by |
T16575 | 54-63 | VBN | denotes | generated |
T16574 | 50-53 | VBD | denotes | was |
T16573 | 48-49 | -RRB- | denotes | ) |
T16572 | 43-48 | JJ | denotes | E-luc |
T16571 | 42-43 | -LRB- | denotes | ( |
T16570 | 34-41 | NN | denotes | plasmid |
T16569 | 25-33 | NN | denotes | reporter |
T16568 | 16-24 | NN | denotes | deletion |
T16567 | 7-15 | NN | denotes | promoter |
T16566 | 4-6 | JJ | denotes | ɛy |
T16565 | 0-3 | DT | denotes | The |
T16883 | 1603-1606 | CD | denotes | +20 |
T16882 | 1600-1602 | TO | denotes | to |
T16881 | 1596-1599 | CD | denotes | +45 |
T16880 | 1595-1596 | -LRB- | denotes | ( |
T16879 | 1593-1594 | NN | denotes | ′ |
T16878 | 1567-1593 | CD | denotes | CGGAAGCTTGGGAGGTTGCTGGTGA3 |
T16877 | 1566-1567 | NN | denotes | ′ |
T16876 | 1565-1566 | CD | denotes | 5 |
T16875 | 1563-1564 | , | denotes | , |
T16874 | 1556-1563 | NNP | denotes | MHB1477 |
T16657 | 501-508 | JJS | denotes | longest |
T16656 | 497-500 | DT | denotes | the |
T16655 | 494-496 | IN | denotes | on |
T16654 | 488-493 | VBN | denotes | based |
T16653 | 485-487 | VBZ | denotes | is |
T16652 | 480-484 | NN | denotes | site |
T16651 | 474-479 | NN | denotes | start |
T16650 | 458-473 | JJ | denotes | transcriptional |
T16649 | 454-457 | DT | denotes | The |
T16648 | 452-453 | . | denotes | . |
T16647 | 448-452 | NN | denotes | site |
T16646 | 442-447 | VB | denotes | start |
T16645 | 428-441 | NN | denotes | transcription |
T16644 | 424-427 | DT | denotes | the |
T16643 | 421-423 | TO | denotes | to |
T16642 | 412-420 | JJ | denotes | relative |
T16641 | 409-411 | VBZ | denotes | is |
T16640 | 399-408 | NN | denotes | numbering |
T16639 | 388-398 | NNP | denotes | Nucleotide |
T16638 | 386-387 | . | denotes | . |
T16637 | 385-386 | NNP | denotes | ] |
T16636 | 383-385 | CD | denotes | 50 |
R11481 | T16565 | T16570 | det | The,plasmid |
R11482 | T16566 | T16567 | amod | ɛy,promoter |
R11483 | T16567 | T16570 | compound | promoter,plasmid |
R11484 | T16568 | T16570 | compound | deletion,plasmid |
R11485 | T16569 | T16570 | compound | reporter,plasmid |
R11486 | T16570 | T16575 | nsubjpass | plasmid,generated |
R11487 | T16571 | T16570 | punct | (,plasmid |
R11488 | T16572 | T16570 | appos | E-luc,plasmid |
R11489 | T16573 | T16570 | punct | ),plasmid |
R11490 | T16574 | T16575 | auxpass | was,generated |
R11491 | T16575 | T16575 | ROOT | generated,generated |
R11492 | T16576 | T16575 | agent | by,generated |
R11493 | T16577 | T16578 | compound | PCR,amplification |
R11494 | T16578 | T16576 | pobj | amplification,by |
R11495 | T16579 | T16578 | prep | of,amplification |
R11496 | T16580 | T16583 | det | the,promoter |
R11497 | T16581 | T16583 | amod | ɛy,promoter |
R11498 | T16582 | T16583 | amod | proximal,promoter |
R11499 | T16583 | T16579 | pobj | promoter,of |
R11500 | T16584 | T16575 | punct | .,generated |
R11501 | T16585 | T16587 | det | A,fragment |
R11502 | T16586 | T16587 | compound | 2.2-kb,fragment |
R11503 | T16587 | T16588 | compound | fragment,upstream |
R11504 | T16588 | T16599 | nsubjpass | upstream,used |
R11505 | T16589 | T16588 | prep | of,upstream |
R11506 | T16590 | T16593 | det | the,initiation |
R11507 | T16591 | T16593 | amod | ɛy,initiation |
R11508 | T16592 | T16593 | compound | globin,initiation |
R11509 | T16593 | T16594 | compound | initiation,codon |
R11510 | T16594 | T16589 | pobj | codon,of |
R11511 | T16595 | T16596 | punct | (,ATG |
R11512 | T16596 | T16594 | appos | ATG,codon |
R11513 | T16597 | T16594 | punct | ),codon |
R11514 | T16598 | T16599 | auxpass | was,used |
R11515 | T16599 | T16599 | ROOT | used,used |
R11516 | T16600 | T16599 | punct | ",",used |
R11517 | T16601 | T16605 | mark | because,shown |
R11518 | T16602 | T16605 | nsubjpass | it,shown |
R11519 | T16603 | T16605 | aux | has,shown |
R11520 | T16604 | T16605 | auxpass | been,shown |
R11521 | T16605 | T16599 | advcl | shown,used |
R11522 | T16606 | T16615 | mark | that,located |
R11523 | T16607 | T16608 | det | all,sequences |
R11524 | T16608 | T16615 | nsubjpass | sequences,located |
R11525 | T16609 | T16608 | acl | required,sequences |
R11526 | T16610 | T16609 | prep | for,required |
R11527 | T16611 | T16612 | compound | ɛ,gene |
R11528 | T16612 | T16610 | pobj | gene,for |
R11529 | T16613 | T16612 | acl | silencing,gene |
R11530 | T16614 | T16615 | auxpass | are,located |
R11531 | T16615 | T16605 | ccomp | located,shown |
R11532 | T16616 | T16615 | prep | within,located |
R11533 | T16617 | T16620 | det | a,fragment |
R11534 | T16618 | T16620 | compound | 3.7-kb,fragment |
R11535 | T16619 | T16620 | compound | EcoRI,fragment |
R11536 | T16620 | T16616 | pobj | fragment,within |
R11537 | T16621 | T16620 | acl | containing,fragment |
R11538 | T16622 | T16624 | quantmod | about,kb |
R11539 | T16623 | T16624 | nummod | 2,kb |
R11540 | T16624 | T16621 | dobj | kb,containing |
R11541 | T16625 | T16624 | prep | of,kb |
R11542 | T16626 | T16625 | pobj | sequence,of |
R11543 | T16627 | T16621 | advmod | upstream,containing |
R11544 | T16628 | T16627 | prep | of,upstream |
R11545 | T16629 | T16634 | det | the,site |
R11546 | T16630 | T16634 | nmod | ɛ,site |
R11547 | T16631 | T16634 | compound | globin,site |
R11548 | T16632 | T16633 | compound | gene,cap |
R11549 | T16633 | T16634 | compound | cap,site |
R11550 | T16634 | T16628 | pobj | site,of |
R11551 | T16635 | T16634 | appos | [,site |
R11552 | T16636 | T16637 | nummod | 50,] |
R11553 | T16637 | T16634 | appos | ],site |
R11554 | T16638 | T16599 | punct | .,used |
R11555 | T16639 | T16640 | compound | Nucleotide,numbering |
R11556 | T16640 | T16641 | nsubj | numbering,is |
R11557 | T16641 | T16641 | ROOT | is,is |
R11558 | T16642 | T16641 | acomp | relative,is |
R11559 | T16643 | T16642 | prep | to,relative |
R11560 | T16644 | T16645 | det | the,transcription |
R11561 | T16645 | T16646 | nsubj | transcription,start |
R11562 | T16646 | T16641 | conj | start,is |
R11563 | T16647 | T16646 | dobj | site,start |
R11564 | T16648 | T16641 | punct | .,is |
R11565 | T16649 | T16652 | det | The,site |
R11566 | T16650 | T16652 | amod | transcriptional,site |
R11567 | T16651 | T16652 | compound | start,site |
R11568 | T16652 | T16654 | nsubjpass | site,based |
R11569 | T16653 | T16654 | auxpass | is,based |
R11570 | T16654 | T16654 | ROOT | based,based |
R11571 | T16655 | T16654 | prep | on,based |
R11572 | T16656 | T16658 | det | the,cDNA |
R11573 | T16657 | T16658 | amod | longest,cDNA |
R11574 | T16658 | T16655 | pobj | cDNA,on |
R11575 | T16659 | T16658 | prep | in,cDNA |
R11576 | T16660 | T16661 | det | the,Fantom |
R11577 | T16661 | T16659 | pobj | Fantom,in |
R11578 | T16662 | T16661 | punct | (,Fantom |
R11579 | T16663 | T16664 | compound | Functional,Annotation |
R11580 | T16664 | T16661 | appos | Annotation,Fantom |
R11581 | T16665 | T16664 | prep | of,Annotation |
R11582 | T16666 | T16665 | pobj | Mouse,of |
R11583 | T16667 | T16661 | punct | ),Fantom |
R11584 | T16668 | T16658 | conj | database,cDNA |
R11585 | T16669 | T16654 | punct | .,based |
R11586 | T16670 | T16672 | det | The,primers |
R11587 | T16671 | T16672 | compound | PCR,primers |
R11588 | T16672 | T16673 | nsubj | primers,contained |
R11589 | T16673 | T16673 | ROOT | contained,contained |
R11590 | T16674 | T16677 | nmod | XhoI,sites |
R11591 | T16675 | T16674 | cc | and,XhoI |
R11592 | T16676 | T16674 | conj | HindIII,XhoI |
R11593 | T16677 | T16673 | dobj | sites,contained |
R11594 | T16678 | T16680 | nsubjpass | that,used |
R11595 | T16679 | T16680 | auxpass | were,used |
R11596 | T16680 | T16677 | relcl | used,sites |
R11597 | T16681 | T16682 | aux | to,clone |
R11598 | T16682 | T16680 | xcomp | clone,used |
R11599 | T16683 | T16686 | det | the,fragment |
R11600 | T16684 | T16686 | amod | ɛy,fragment |
R11601 | T16685 | T16686 | compound | promoter,fragment |
R11602 | T16686 | T16682 | dobj | fragment,clone |
R11603 | T16687 | T16682 | advmod | upstream,clone |
R11604 | T16688 | T16687 | prep | of,upstream |
R11605 | T16689 | T16692 | det | the,gene |
R11606 | T16690 | T16692 | amod | firefly,gene |
R11607 | T16691 | T16692 | compound | luciferase,gene |
R11608 | T16692 | T16688 | pobj | gene,of |
R11609 | T16693 | T16692 | prep | in,gene |
R11610 | T16694 | T16695 | compound | pGL3,Basic |
R11611 | T16695 | T16693 | pobj | Basic,in |
R11612 | T16696 | T16699 | punct | (,Madison |
R11613 | T16697 | T16699 | nmod | Promega,Madison |
R11614 | T16698 | T16697 | punct | ",",Promega |
R11615 | T16699 | T16692 | appos | Madison,gene |
R11616 | T16700 | T16699 | punct | ",",Madison |
R11617 | T16701 | T16699 | npadvmod | Wisconsin,Madison |
R11618 | T16702 | T16701 | punct | ",",Wisconsin |
R11619 | T16703 | T16704 | compound | United,States |
R11620 | T16704 | T16701 | appos | States,Wisconsin |
R11621 | T16705 | T16699 | punct | ),Madison |
R11622 | T16706 | T16673 | punct | .,contained |
R11623 | T16707 | T16710 | det | A,fragment |
R11624 | T16708 | T16710 | amod | 2.5-kb,fragment |
R11625 | T16709 | T16710 | compound | SstI/XhoI,fragment |
R11626 | T16710 | T16724 | nsubjpass | fragment,inserted |
R11627 | T16711 | T16710 | prep | of,fragment |
R11628 | T16712 | T16713 | quantmod | μLCRβ,9.3 |
R11629 | T16713 | T16711 | pobj | 9.3,of |
R11630 | T16714 | T16724 | punct | (,inserted |
R11631 | T16715 | T16716 | compound | micro,LCR |
R11632 | T16716 | T16724 | nsubjpass | LCR,inserted |
R11633 | T16717 | T16720 | punct | ;,] |
R11634 | T16718 | T16720 | compound | [,] |
R11635 | T16719 | T16720 | nummod | 31,] |
R11636 | T16720 | T16716 | appos | ],LCR |
R11637 | T16721 | T16720 | punct | ),] |
R11638 | T16722 | T16724 | auxpass | was,inserted |
R11639 | T16723 | T16724 | advmod | then,inserted |
R11640 | T16724 | T16724 | ROOT | inserted,inserted |
R11641 | T16725 | T16724 | advmod | upstream,inserted |
R11642 | T16726 | T16725 | prep | of,upstream |
R11643 | T16727 | T16729 | det | the,promoter |
R11644 | T16728 | T16729 | amod | ɛy,promoter |
R11645 | T16729 | T16726 | pobj | promoter,of |
R11646 | T16730 | T16729 | prep | in,promoter |
R11647 | T16731 | T16735 | det | the,plasmid |
R11648 | T16732 | T16735 | amod | above,plasmid |
R11649 | T16733 | T16735 | amod | pGL3,plasmid |
R11650 | T16734 | T16735 | amod | Basic,plasmid |
R11651 | T16735 | T16730 | pobj | plasmid,in |
R11652 | T16736 | T16724 | punct | ",",inserted |
R11653 | T16737 | T16724 | advcl | resulting,inserted |
R11654 | T16738 | T16737 | prep | in,resulting |
R11655 | T16739 | T16740 | det | a,reporter |
R11656 | T16740 | T16738 | pobj | reporter,in |
R11657 | T16741 | T16724 | punct | construct,inserted |
R11658 | T16742 | T16747 | prep | in,driven |
R11659 | T16743 | T16742 | pobj | which,in |
R11660 | T16744 | T16745 | amod | luciferase,expression |
R11661 | T16745 | T16747 | nsubjpass | expression,driven |
R11662 | T16746 | T16747 | auxpass | is,driven |
R11663 | T16747 | T16724 | advcl | driven,inserted |
R11664 | T16748 | T16747 | agent | by,driven |
R11665 | T16749 | T16751 | det | the,promoter |
R11666 | T16750 | T16751 | amod | ɛy,promoter |
R11667 | T16751 | T16748 | pobj | promoter,by |
R11668 | T16752 | T16724 | punct | .,inserted |
R11669 | T16753 | T16754 | det | A,series |
R11670 | T16754 | T16763 | nsubjpass | series,generated |
R11671 | T16755 | T16754 | prep | of,series |
R11672 | T16756 | T16757 | compound | deletion,constructs |
R11673 | T16757 | T16755 | pobj | constructs,of |
R11674 | T16758 | T16757 | prep | of,constructs |
R11675 | T16759 | T16761 | det | the,promoter |
R11676 | T16760 | T16761 | amod | ɛy,promoter |
R11677 | T16761 | T16758 | pobj | promoter,of |
R11678 | T16762 | T16763 | auxpass | were,generated |
R11679 | T16763 | T16763 | ROOT | generated,generated |
R11680 | T16764 | T16763 | advmod | similarly,generated |
R11681 | T16765 | T16763 | punct | .,generated |
R11682 | T16766 | T16767 | amod | Forward,primers |
R11683 | T16767 | T16772 | nsubj | primers,include |
R11684 | T16768 | T16767 | prep | with,primers |
R11685 | T16769 | T16771 | det | an,site |
R11686 | T16770 | T16771 | compound | XhoI,site |
R11687 | T16771 | T16768 | pobj | site,with |
R11688 | T16772 | T16772 | ROOT | include,include |
R11689 | T16773 | T16772 | punct | :,include |
R11690 | T16774 | T16772 | dobj | MHB1457,include |
R11691 | T16775 | T16774 | punct | ",",MHB1457 |
R11692 | T16776 | T16779 | nummod | 5,′ |
R11693 | T16777 | T16778 | quantmod | ′,CCGCTCGAGTGCTAGGCAAACACTCA3 |
R11694 | T16778 | T16779 | nummod | CCGCTCGAGTGCTAGGCAAACACTCA3,′ |
R11695 | T16779 | T16774 | appos | ′,MHB1457 |
R11696 | T16780 | T16779 | punct | (,′ |
R11697 | T16781 | T16779 | nmod | −,′ |
R11698 | T16782 | T16781 | pobj | 2077,− |
R11699 | T16783 | T16779 | prep | to,′ |
R11700 | T16784 | T16783 | pobj | −,to |
R11701 | T16785 | T16784 | appos | 2052,− |
R11702 | T16786 | T16784 | punct | ),− |
R11703 | T16787 | T16783 | punct | ;,to |
R11704 | T16788 | T16783 | pobj | MHB1503,to |
R11705 | T16789 | T16788 | punct | ",",MHB1503 |
R11706 | T16790 | T16791 | nummod | 5,′ |
R11707 | T16791 | T16788 | appos | ′,MHB1503 |
R11708 | T16792 | T16793 | nummod | CCGCTCGAGTCTCTACACTGTCACTCCCTG3,′ |
R11709 | T16793 | T16791 | appos | ′,′ |
R11710 | T16794 | T16795 | punct | (,− |
R11711 | T16795 | T16793 | appos | −,′ |
R11712 | T16796 | T16795 | nummod | 634,− |
R11713 | T16797 | T16796 | prep | to,634 |
R11714 | T16798 | T16797 | pobj | −,to |
R11715 | T16799 | T16798 | appos | 605,− |
R11716 | T16800 | T16798 | punct | ),− |
R11717 | T16801 | T16802 | punct | ;,MHB1505 |
R11718 | T16802 | T16793 | appos | MHB1505,′ |
R11719 | T16803 | T16802 | punct | ",",MHB1505 |
R11720 | T16804 | T16805 | nummod | 5,′ |
R11721 | T16805 | T16807 | dep | ′,′ |
R11722 | T16806 | T16807 | nummod | CCGCTCGAGGGAGCCAAAAAAAGAATGC3,′ |
R11723 | T16807 | T16802 | appos | ′,MHB1505 |
R11724 | T16808 | T16809 | punct | (,− |
R11725 | T16809 | T16816 | nmod | −,MHB1506 |
R11726 | T16810 | T16809 | nummod | 197,− |
R11727 | T16811 | T16815 | quantmod | to,; |
R11728 | T16812 | T16811 | pobj | −,to |
R11729 | T16813 | T16812 | appos | 169,− |
R11730 | T16814 | T16812 | punct | ),− |
R11731 | T16815 | T16816 | punct | ;,MHB1506 |
R11732 | T16816 | T16830 | nmod | MHB1506,MHB1532 |
R11733 | T16817 | T16816 | punct | ",",MHB1506 |
R11734 | T16818 | T16819 | nummod | 5,′ |
R11735 | T16819 | T16830 | nmod | ′,MHB1532 |
R11736 | T16820 | T16821 | nummod | CCGCTCGAGCTGACCAATGGCTTCAAAG3,′ |
R11737 | T16821 | T16819 | appos | ′,′ |
R11738 | T16822 | T16823 | punct | (,− |
R11739 | T16823 | T16821 | appos | −,′ |
R11740 | T16824 | T16823 | nummod | 85,− |
R11741 | T16825 | T16824 | prep | to,85 |
R11742 | T16826 | T16825 | pobj | −,to |
R11743 | T16827 | T16826 | appos | 58,− |
R11744 | T16828 | T16826 | punct | ),− |
R11745 | T16829 | T16830 | punct | ;,MHB1532 |
R11746 | T16830 | T16807 | appos | MHB1532,′ |
R11747 | T16831 | T16830 | punct | ",",MHB1532 |
R11748 | T16832 | T16833 | nummod | 5,′ |
R11749 | T16833 | T16835 | dep | ′,′ |
R11750 | T16834 | T16835 | nummod | CCGCTCGAGAATGCAGAACAAAGGGTCAGA3,′ |
R11751 | T16835 | T16830 | appos | ′,MHB1532 |
R11752 | T16836 | T16837 | punct | (,− |
R11753 | T16837 | T16835 | appos | −,′ |
R11754 | T16838 | T16837 | nummod | 63,− |
R11755 | T16839 | T16838 | prep | to,63 |
R11756 | T16840 | T16839 | pobj | −,to |
R11757 | T16841 | T16840 | appos | 34,− |
R11758 | T16842 | T16840 | punct | ),− |
R11759 | T16843 | T16837 | punct | ;,− |
R11760 | T16844 | T16837 | cc | and,− |
R11761 | T16845 | T16835 | appos | MHB1507,′ |
R11762 | T16846 | T16845 | punct | ",",MHB1507 |
R11763 | T16847 | T16848 | nummod | 5,′ |
R11764 | T16848 | T16849 | compound | ′,CCGCTCGAGGTCTGCGAAGAATAAAAGGC |
R11765 | T16849 | T16851 | quantmod | CCGCTCGAGGTCTGCGAAGAATAAAAGGC,′ |
R11766 | T16850 | T16851 | nummod | 3,′ |
R11767 | T16851 | T16835 | appos | ′,′ |
R11768 | T16852 | T16853 | punct | (,− |
R11769 | T16853 | T16851 | appos | −,′ |
R11770 | T16854 | T16853 | dobj | 37,− |
R11771 | T16855 | T16853 | prep | to,− |
R11772 | T16856 | T16855 | pobj | −,to |
R11773 | T16857 | T16856 | appos | 9,− |
R11774 | T16858 | T16856 | punct | ),− |
R11775 | T16859 | T16772 | punct | .,include |
R11776 | T16860 | T16862 | det | All,primers |
R11777 | T16861 | T16862 | amod | forward,primers |
R11778 | T16862 | T16864 | nsubjpass | primers,used |
R11779 | T16863 | T16864 | auxpass | were,used |
R11780 | T16864 | T16864 | ROOT | used,used |
R11781 | T16865 | T16864 | prep | in,used |
R11782 | T16866 | T16865 | pobj | combination,in |
R11783 | T16867 | T16864 | prep | with,used |
R11784 | T16868 | T16872 | det | the,site |
R11785 | T16869 | T16870 | compound | reverse,primer |
R11786 | T16870 | T16872 | compound | primer,site |
R11787 | T16871 | T16872 | compound | HindIII,site |
R11788 | T16872 | T16867 | pobj | site,with |
R11789 | T16873 | T16872 | punct | :,site |
R11790 | T16874 | T16872 | appos | MHB1477,site |
R11791 | T16875 | T16874 | punct | ",",MHB1477 |
R11792 | T16876 | T16877 | nummod | 5,′ |
R11793 | T16877 | T16874 | appos | ′,MHB1477 |
R11794 | T16878 | T16879 | nummod | CGGAAGCTTGGGAGGTTGCTGGTGA3,′ |
R11795 | T16879 | T16877 | appos | ′,′ |
R11796 | T16880 | T16881 | punct | (,+45 |
R11797 | T16881 | T16879 | appos | +45,′ |
R11798 | T16882 | T16881 | prep | to,+45 |
R11799 | T16883 | T16882 | pobj | +20,to |
R11800 | T16884 | T16881 | punct | ),+45 |
R11801 | T16885 | T16864 | punct | .,used |
bionlp-st-ge-2016-test-tees
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T16499 | 778-782 | Protein | denotes | SstI |
T16498 | 587-596 | Gene_expression | denotes | contained |
T16497 | 587-596 | Gene_expression | denotes | contained |
T16496 | 712-716 | Protein | denotes | pGL3 |
T16495 | 685-708 | Protein | denotes | firefly luciferase gene |
T16494 | 606-619 | Protein | denotes | HindIII sites |
T16493 | 597-601 | Protein | denotes | XhoI |
T16492 | 359-372 | Protein | denotes | ɛ globin gene |
T16491 | 294-299 | Protein | denotes | EcoRI |
T16490 | 148-157 | Protein | denotes | ɛy globin |
T16489 | 92-112 | Protein | denotes | ɛy proximal promoter |
T16507 | 1556-1563 | Protein | denotes | MHB1477 |
T16506 | 1542-1554 | Protein | denotes | HindIII site |
T16505 | 1416-1423 | Protein | denotes | MHB1507 |
T16504 | 1103-1112 | Protein | denotes | XhoI site |
T16503 | 961-971 | Gene_expression | denotes | expression |
T16502 | 950-960 | Protein | denotes | luciferase |
T16501 | 800-809 | Protein | denotes | μLCRβ 9.3 |
T16500 | 783-787 | Protein | denotes | XhoI |
R11461 | T16493 | T16497 | themeOf | XhoI,contained |
R11462 | T16494 | T16498 | themeOf | HindIII sites,contained |
R11463 | T16502 | T16503 | themeOf | luciferase,expression |
testone
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15960 | 975-981 | Positive_regulation | denotes | driven |
T15959 | 961-971 | Gene_expression | denotes | expression |
T15958 | 256-265 | Negative_regulation | denotes | silencing |
T15952 | 1041-1043 | Protein | denotes | ɛy |
T15951 | 989-991 | Protein | denotes | ɛy |
T15950 | 950-960 | Protein | denotes | luciferase |
T15949 | 862-864 | Protein | denotes | ɛy |
T15948 | 693-703 | Protein | denotes | luciferase |
T15947 | 648-650 | Protein | denotes | ɛy |
T15946 | 359-367 | Protein | denotes | ɛ globin |
T15945 | 249-250 | Protein | denotes | ɛ |
T15944 | 148-157 | Protein | denotes | ɛy globin |
T15943 | 92-94 | Protein | denotes | ɛy |
T15942 | 4-6 | Protein | denotes | ɛy |
R11066 | T15945 | T15958 | themeOf | ɛ,silencing |
R11067 | T15950 | T15959 | themeOf | luciferase,expression |
R11068 | T15959 | T15960 | themeOf | expression,driven |
test3
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T15989 | 1041-1043 | Protein | denotes | ɛy |
T15988 | 989-991 | Protein | denotes | ɛy |
T15987 | 975-981 | Positive_regulation | denotes | driven |
T15986 | 961-971 | Gene_expression | denotes | expression |
T15985 | 950-960 | Protein | denotes | luciferase |
T15984 | 862-864 | Protein | denotes | ɛy |
T15983 | 693-703 | Protein | denotes | luciferase |
T15982 | 648-650 | Protein | denotes | ɛy |
T15981 | 359-367 | Protein | denotes | ɛ globin |
T15980 | 249-250 | Protein | denotes | ɛ |
T15979 | 148-157 | Protein | denotes | ɛy globin |
T15978 | 92-94 | Protein | denotes | ɛy |
T15977 | 4-6 | Protein | denotes | ɛy |
T15971 | 1041-1043 | Protein | denotes | ɛy |
T15970 | 989-991 | Protein | denotes | ɛy |
T15969 | 950-960 | Protein | denotes | luciferase |
T15968 | 862-864 | Protein | denotes | ɛy |
T15967 | 693-703 | Protein | denotes | luciferase |
T15966 | 648-650 | Protein | denotes | ɛy |
T15965 | 359-367 | Protein | denotes | ɛ globin |
T15964 | 249-250 | Protein | denotes | ɛ |
T15963 | 148-157 | Protein | denotes | ɛy globin |
T15962 | 92-94 | Protein | denotes | ɛy |
T15961 | 4-6 | Protein | denotes | ɛy |
R11069 | T15985 | T15986 | themeOf | luciferase,expression |
R11070 | T15986 | T15987 | themeOf | expression,driven |