> top > docs > PMC:1359074 > spans > 33655-35886 > annotations

PMC:1359074 / 33655-35886 JSONTXT

Annnotations TAB JSON ListView MergeView

2_test

Id Subject Object Predicate Lexical cue
16462943-1737096-85761022 405-407 1737096 denotes 50
16462943-2748594-85761023 845-847 2748594 denotes 31
16462943-14530442-85761024 1646-1648 14530442 denotes 15
16462943-12677004-85761025 1823-1825 12677004 denotes 32
T43787 405-407 1737096 denotes 50
T59528 845-847 2748594 denotes 31
T89386 1646-1648 14530442 denotes 15
T39276 1823-1825 12677004 denotes 32

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T16443 2229-2230 -RRB- denotes )
T16442 2226-2229 CD denotes −18
T16441 2223-2225 TO denotes to
T16440 2219-2222 CD denotes −63
T16439 2218-2219 -LRB- denotes (
T16438 2215-2217 NN denotes 3′
T16437 2166-2214 NN denotes 5′CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
T16436 2164-2165 -COMMA- denotes ,
T16435 2157-2164 NN denotes MHB1663
T16434 2153-2156 CC denotes and
T16433 2151-2152 -COLON- denotes ;
T16432 2150-2151 -RRB- denotes )
T16431 2147-2150 CD denotes −16
T16430 2144-2146 TO denotes to
T16429 2140-2143 CD denotes −63
T16428 2139-2140 -LRB- denotes (
T16427 2087-2138 NN denotes 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′
T16426 2085-2086 -COMMA- denotes ,
T16425 2078-2085 NN denotes MHB1662
T16424 2076-2077 -COLON- denotes ;
T16423 2075-2076 -RRB- denotes )
T16422 2072-2075 CD denotes −19
T16421 2069-2071 TO denotes to
T16420 2065-2068 CD denotes −63
T16184 642-646 WDT denotes that
T16183 636-641 NN denotes sites
T16182 628-635 NN denotes HindIII
T16181 624-627 CC denotes and
T16180 619-623 NN denotes XhoI
T16179 609-618 VB denotes contained
T16178 601-608 NN denotes primers
T16177 597-600 NN denotes PCR
T16176 593-596 DT denotes The
T16175 583-591 NN denotes database
T16174 581-582 -RRB- denotes )
T16173 576-581 NN denotes Mouse
T16172 573-575 IN denotes of
T16171 562-572 NN denotes Annotation
T16170 551-561 JJ denotes Functional
T16169 550-551 -LRB- denotes (
T16168 543-549 NNP denotes Fantom
T16167 539-542 DT denotes the
T16166 536-538 IN denotes in
T16165 531-535 NN denotes cDNA
T16164 523-530 JJ denotes longest
T16163 519-522 DT denotes the
T16162 516-518 IN denotes on
T16161 510-515 VB denotes based
T16160 507-509 VB denotes is
T16159 502-506 NN denotes site
T16158 496-501 NN denotes start
T16157 480-495 JJ denotes transcriptional
T16156 476-479 DT denotes The
T16155 470-474 NN denotes site
T16154 464-469 NN denotes start
T16153 450-463 NN denotes transcription
T16152 446-449 DT denotes the
T16151 443-445 TO denotes to
T16150 434-442 JJ denotes relative
T16149 431-433 VB denotes is
T16148 421-430 NN denotes numbering
T16147 410-420 NN denotes Nucleotide
T16146 407-408 -RRB- denotes ]
T16145 405-407 CD denotes 50
T16144 404-405 -LRB- denotes [
T16143 399-403 NN denotes site
T16142 395-398 NN denotes cap
T16141 390-394 NN denotes gene
T16140 383-389 NN denotes globin
T16139 381-382 NN denotes ɛ
T16138 377-380 DT denotes the
T16137 374-376 IN denotes of
T16136 365-373 RB denotes upstream
T16135 356-364 NN denotes sequence
T16134 353-355 IN denotes of
T16133 350-352 NN denotes kb
T16132 348-349 CD denotes 2
T16131 342-347 IN denotes about
T16130 331-341 VB denotes containing
T16129 322-330 NN denotes fragment
T16128 316-321 NN denotes EcoRI
T16127 309-315 JJ denotes 3.7-kb
T16126 307-308 DT denotes a
T16125 300-306 IN denotes within
T16124 292-299 JJ denotes located
T16123 288-291 VB denotes are
T16122 278-287 NN denotes silencing
T16121 273-277 NN denotes gene
T16120 271-272 NN denotes ɛ
T16119 267-270 IN denotes for
T16118 258-266 VB denotes required
T16117 248-257 NN denotes sequences
T16116 244-247 DT denotes all
T16115 239-243 IN denotes that
T16114 233-238 VB denotes shown
T16113 228-232 VB denotes been
T16112 224-227 VB denotes has
T16111 221-223 PRP denotes it
T16110 213-220 IN denotes because
T16109 211-212 -COMMA- denotes ,
T16108 207-211 VB denotes used
T16107 203-206 VB denotes was
T16106 201-202 -RRB- denotes )
T16105 198-201 NN denotes ATG
T16104 197-198 -LRB- denotes (
T16103 191-196 NN denotes codon
T16102 180-190 NN denotes initiation
T16101 173-179 NN denotes globin
T16100 170-172 JJ denotes ɛy
T16099 166-169 DT denotes the
T16098 163-165 IN denotes of
T16097 154-162 RB denotes upstream
T16096 145-153 NN denotes fragment
T16095 138-144 JJ denotes 2.2-kb
T16094 136-137 DT denotes A
T16093 126-134 NN denotes promoter
T16092 117-125 JJ denotes proximal
T16091 114-116 JJ denotes ɛy
T16090 110-113 DT denotes the
T16089 107-109 IN denotes of
T16088 93-106 NN denotes amplification
T16087 89-92 NN denotes PCR
T16086 86-88 IN denotes by
T16085 76-85 VB denotes generated
T16084 72-75 VB denotes was
T16083 70-71 -RRB- denotes )
T16082 65-70 NN denotes E-luc
T16081 64-65 -LRB- denotes (
T16080 56-63 NN denotes plasmid
T16079 47-55 NN denotes reporter
T16078 38-46 NN denotes deletion
T16077 29-37 NN denotes promoter
T16076 26-28 JJ denotes ɛy
T16075 22-25 DT denotes The
T16074 8-20 NN denotes construction
T16073 0-7 NN denotes Plasmid
T16374 1758-1762 WDT denotes that
T16373 1756-1757 -RRB- denotes )
T16372 1738-1756 NN denotes Sox6-ΔHMG-pcDNA3.1
T16371 1737-1738 -LRB- denotes (
T16370 1727-1736 NN denotes construct
T16369 1712-1726 NN denotes overexpression
T16368 1707-1711 NN denotes Sox6
T16367 1703-1706 DT denotes the
T16366 1700-1702 IN denotes of
T16365 1692-1699 NN denotes version
T16364 1682-1691 VB denotes truncated
T16363 1680-1681 DT denotes A
T16362 1674-1678 NN denotes Sox6
T16361 1662-1673 VB denotes overexpress
T16360 1659-1661 TO denotes to
T16359 1654-1658 VB denotes used
T16358 1650-1653 VB denotes was
T16357 1648-1649 -RRB- denotes ]
T16356 1646-1648 CD denotes 15
T16355 1645-1646 -LRB- denotes [
T16354 1631-1644 NN denotes Sox6-pcDNA3.1
T16353 1628-1629 -RRB- denotes )
T16352 1625-1628 CD denotes +20
T16351 1622-1624 TO denotes to
T16350 1618-1621 CD denotes +45
T16349 1617-1618 -LRB- denotes (
T16348 1587-1616 NN denotes 5′CGGAAGCTTGGGAGGTTGCTGGTGA3′
T16347 1585-1586 -COMMA- denotes ,
T16346 1578-1585 NN denotes MHB1477
T16345 1576-1577 -COLON- denotes :
T16344 1572-1576 NN denotes site
T16343 1564-1571 NN denotes HindIII
T16342 1557-1563 NN denotes primer
T16341 1549-1556 JJ denotes reverse
T16340 1545-1548 DT denotes the
T16339 1540-1544 IN denotes with
T16338 1528-1539 NN denotes combination
T16337 1525-1527 IN denotes in
T16336 1520-1524 VB denotes used
T16335 1515-1519 VB denotes were
T16334 1507-1514 NN denotes primers
T16333 1499-1506 JJ denotes forward
T16332 1495-1498 DT denotes All
T16331 1492-1493 -RRB- denotes )
T16330 1490-1492 CD denotes −9
T16329 1487-1489 TO denotes to
T16328 1483-1486 CD denotes −37
T16327 1482-1483 -LRB- denotes (
T16326 1479-1481 NN denotes 3′
T16325 1447-1478 NN denotes 5′CCGCTCGAGGTCTGCGAAGAATAAAAGGC
T16324 1445-1446 -COMMA- denotes ,
T16323 1438-1445 NN denotes MHB1507
T16322 1434-1437 CC denotes and
T16321 1432-1433 -COLON- denotes ;
T16320 1431-1432 -RRB- denotes )
T16319 1428-1431 CD denotes −34
T16318 1425-1427 TO denotes to
T16317 1421-1424 CD denotes −63
T16316 1420-1421 -LRB- denotes (
T16315 1385-1419 NN denotes 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGA3′
T16314 1383-1384 -COMMA- denotes ,
T16313 1376-1383 NN denotes MHB1532
T16312 1374-1375 -COLON- denotes ;
T16311 1373-1374 -RRB- denotes )
T16310 1370-1373 CD denotes −58
T16309 1367-1369 TO denotes to
T16308 1363-1366 CD denotes −85
T16307 1362-1363 -LRB- denotes (
T16306 1329-1361 NN denotes 5′CCGCTCGAGCTGACCAATGGCTTCAAAG3′
T16305 1327-1328 -COMMA- denotes ,
T16304 1320-1327 NN denotes MHB1506
T16303 1318-1319 -COLON- denotes ;
T16302 1317-1318 -RRB- denotes )
T16301 1313-1317 CD denotes −169
T16300 1310-1312 TO denotes to
T16299 1305-1309 CD denotes −197
T16298 1304-1305 -LRB- denotes (
T16297 1271-1303 NN denotes 5′CCGCTCGAGGGAGCCAAAAAAAGAATGC3′
T16296 1269-1270 -COMMA- denotes ,
T16295 1262-1269 NN denotes MHB1505
T16294 1260-1261 -COLON- denotes ;
T16293 1259-1260 -RRB- denotes )
T16292 1255-1259 CD denotes −605
T16291 1252-1254 TO denotes to
T16290 1247-1251 CD denotes −634
T16289 1246-1247 -LRB- denotes (
T16288 1211-1245 NN denotes 5′CCGCTCGAGTCTCTACACTGTCACTCCCTG3′
T16287 1209-1210 -COMMA- denotes ,
T16286 1202-1209 NN denotes MHB1503
T16285 1200-1201 -COLON- denotes ;
T16284 1199-1200 -RRB- denotes )
T16283 1194-1199 CD denotes −2052
T16282 1191-1193 TO denotes to
T16281 1185-1190 CD denotes −2077
T16280 1184-1185 -LRB- denotes (
T16279 1153-1183 NN denotes 5′CCGCTCGAGTGCTAGGCAAACACTCA3′
T16278 1151-1152 -COMMA- denotes ,
T16277 1144-1151 NN denotes MHB1457
T16276 1142-1143 -COLON- denotes :
T16275 1135-1142 VB denotes include
T16274 1130-1134 NN denotes site
T16273 1125-1129 NN denotes XhoI
T16272 1122-1124 DT denotes an
T16271 1117-1121 IN denotes with
T16270 1109-1116 NN denotes primers
T16269 1101-1108 JJ denotes Forward
T16268 1090-1099 RB denotes similarly
T16267 1080-1089 VB denotes generated
T16266 1075-1079 VB denotes were
T16265 1066-1074 NN denotes promoter
T16264 1063-1065 JJ denotes ɛy
T16263 1059-1062 DT denotes the
T16262 1056-1058 IN denotes of
T16261 1045-1055 NN denotes constructs
T16260 1036-1044 NN denotes deletion
T16259 1033-1035 IN denotes of
T16258 1026-1032 NN denotes series
T16257 1024-1025 DT denotes A
T16256 1014-1022 NN denotes promoter
T16255 1011-1013 JJ denotes ɛy
T16254 1007-1010 DT denotes the
T16253 1004-1006 IN denotes by
T16252 997-1003 VB denotes driven
T16251 994-996 VB denotes is
T16250 983-993 NN denotes expression
T16249 972-982 NN denotes luciferase
T16248 966-971 WDT denotes which
T16247 963-965 IN denotes in
T16246 953-962 NN denotes construct
T16245 944-952 NN denotes reporter
T16244 942-943 DT denotes a
T16243 939-941 IN denotes in
T16242 929-938 VB denotes resulting
T16241 927-928 -COMMA- denotes ,
T16240 920-927 NN denotes plasmid
T16239 914-919 JJ denotes Basic
T16238 909-913 NN denotes pGL3
T16237 903-908 JJ denotes above
T16236 899-902 DT denotes the
T16235 896-898 IN denotes in
T16234 887-895 NN denotes promoter
T16233 884-886 JJ denotes ɛy
T16232 880-883 DT denotes the
T16231 877-879 IN denotes of
T16230 868-876 RB denotes upstream
T16229 859-867 VB denotes inserted
T16228 854-858 RB denotes then
T16227 850-853 VB denotes was
T16226 848-849 -RRB- denotes )
T16225 847-848 -RRB- denotes ]
T16224 845-847 CD denotes 31
T16223 844-845 -LRB- denotes [
T16222 842-843 -COLON- denotes ;
T16221 839-842 NN denotes LCR
T16220 833-838 NN denotes micro
T16219 832-833 -LRB- denotes (
T16218 828-831 CD denotes 9.3
T16217 822-827 NN denotes μLCRβ
T16216 819-821 IN denotes of
T16215 810-818 NN denotes fragment
T16214 800-809 NN denotes SstI/XhoI
T16213 793-799 JJ denotes 2.5-kb
T16212 791-792 DT denotes A
T16211 788-789 -RRB- denotes )
T16210 782-788 NNP denotes States
T16209 775-781 NNP denotes United
T16208 773-774 -COMMA- denotes ,
T16207 764-773 NNP denotes Wisconsin
T16206 762-763 -COMMA- denotes ,
T16205 755-762 NNP denotes Madison
T16204 753-754 -COMMA- denotes ,
T16203 746-753 NNP denotes Promega
T16202 745-746 -LRB- denotes (
T16201 739-744 JJ denotes Basic
T16200 734-738 NN denotes pGL3
T16199 731-733 IN denotes in
T16198 726-730 NN denotes gene
T16197 715-725 NN denotes luciferase
T16196 707-714 NN denotes firefly
T16195 703-706 DT denotes the
T16194 700-702 IN denotes of
T16193 691-699 RB denotes upstream
T16192 682-690 NN denotes fragment
T16191 673-681 NN denotes promoter
T16190 670-672 JJ denotes ɛy
T16189 666-669 DT denotes the
T16188 660-665 VB denotes clone
T16187 657-659 TO denotes to
T16186 652-656 VB denotes used
T16185 647-651 VB denotes were
T16419 2064-2065 -LRB- denotes (
T16418 2014-2063 NN denotes 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′
T16417 2012-2013 -COMMA- denotes ,
T16416 2005-2012 NN denotes MHB1661
T16415 2003-2004 -COLON- denotes :
T16414 1996-2003 VB denotes include
T16413 1985-1995 NN denotes constructs
T16412 1976-1984 NN denotes reporter
T16411 1967-1975 NN denotes promoter
T16410 1964-1966 NN denotes ɛy
T16409 1952-1963 VB denotes mutagenized
T16408 1946-1951 DT denotes these
T16407 1937-1945 VB denotes generate
T16406 1934-1936 TO denotes to
T16405 1929-1933 VB denotes used
T16404 1921-1928 NN denotes primers
T16403 1913-1920 JJ denotes Forward
T16402 1908-1911 NN denotes PCR
T16401 1905-1907 IN denotes by
T16400 1900-1904 VB denotes done
T16399 1895-1899 VB denotes were
T16398 1886-1894 NN denotes promoter
T16397 1883-1885 JJ denotes ɛy
T16396 1879-1882 DT denotes the
T16395 1876-1878 IN denotes of
T16394 1870-1875 NN denotes sites
T16393 1862-1869 NN denotes binding
T16392 1852-1861 NN denotes consensus
T16391 1843-1851 NN denotes Sox/Sox6
T16390 1840-1842 IN denotes of
T16389 1828-1839 NN denotes Mutagenesis
T16388 1825-1826 -RRB- denotes ]
T16387 1823-1825 CD denotes 32
T16386 1822-1823 -LRB- denotes [
T16385 1815-1821 NN denotes others
T16384 1812-1814 IN denotes by
T16383 1802-1811 VB denotes described
T16382 1799-1801 IN denotes as
T16381 1797-1798 -COMMA- denotes ,
T16380 1788-1797 VB denotes generated
T16379 1784-1787 VB denotes was
T16378 1777-1783 NN denotes domain
T16377 1773-1776 NN denotes HMG
T16376 1769-1772 DT denotes the
T16375 1763-1768 VB denotes lacks
R11081 T16074 T16073 arg1Of construction,Plasmid
R11082 T16080 T16075 arg1Of plasmid,The
R11083 T16080 T16076 arg1Of plasmid,ɛy
R11084 T16080 T16077 arg1Of plasmid,promoter
R11085 T16080 T16078 arg1Of plasmid,deletion
R11086 T16080 T16079 arg1Of plasmid,reporter
R11087 T16080 T16081 arg1Of plasmid,(
R11088 T16080 T16084 arg1Of plasmid,was
R11089 T16080 T16085 arg2Of plasmid,generated
R11090 T16082 T16081 arg2Of E-luc,(
R11091 T16083 T16081 arg3Of ),(
R11092 T16085 T16084 arg2Of generated,was
R11093 T16088 T16085 arg1Of amplification,generated
R11094 T16088 T16086 arg2Of amplification,by
R11095 T16088 T16087 arg1Of amplification,PCR
R11096 T16088 T16089 arg1Of amplification,of
R11097 T16093 T16089 arg2Of promoter,of
R11098 T16093 T16090 arg1Of promoter,the
R11099 T16093 T16091 arg1Of promoter,ɛy
R11100 T16093 T16092 arg1Of promoter,proximal
R11101 T16096 T16094 arg1Of fragment,A
R11102 T16096 T16095 arg1Of fragment,2.2-kb
R11103 T16096 T16097 arg1Of fragment,upstream
R11104 T16096 T16107 arg1Of fragment,was
R11105 T16096 T16108 arg2Of fragment,used
R11106 T16097 T16098 arg1Of upstream,of
R11107 T16103 T16098 arg2Of codon,of
R11108 T16103 T16099 arg1Of codon,the
R11109 T16103 T16100 arg1Of codon,ɛy
R11110 T16103 T16101 arg1Of codon,globin
R11111 T16103 T16102 arg1Of codon,initiation
R11112 T16103 T16104 arg1Of codon,(
R11113 T16105 T16104 arg2Of ATG,(
R11114 T16106 T16104 arg3Of ),(
R11115 T16108 T16107 arg2Of used,was
R11116 T16108 T16109 arg1Of used,","
R11117 T16108 T16110 arg1Of used,because
R11118 T16111 T16112 arg1Of it,has
R11119 T16111 T16113 arg1Of it,been
R11120 T16111 T16114 arg2Of it,shown
R11121 T16114 T16110 arg2Of shown,because
R11122 T16114 T16112 arg2Of shown,has
R11123 T16114 T16113 arg2Of shown,been
R11124 T16117 T16116 arg1Of sequences,all
R11125 T16117 T16118 arg2Of sequences,required
R11126 T16117 T16123 arg1Of sequences,are
R11127 T16117 T16124 arg1Of sequences,located
R11128 T16118 T16119 arg1Of required,for
R11129 T16122 T16119 arg2Of silencing,for
R11130 T16122 T16120 arg1Of silencing,ɛ
R11131 T16122 T16121 arg1Of silencing,gene
R11132 T16123 T16114 arg3Of are,shown
R11133 T16123 T16115 arg1Of are,that
R11134 T16124 T16123 arg2Of located,are
R11135 T16124 T16125 arg1Of located,within
R11136 T16129 T16125 arg2Of fragment,within
R11137 T16129 T16126 arg1Of fragment,a
R11138 T16129 T16127 arg1Of fragment,3.7-kb
R11139 T16129 T16128 arg1Of fragment,EcoRI
R11140 T16129 T16130 arg1Of fragment,containing
R11141 T16130 T16144 arg1Of containing,[
R11142 T16132 T16131 arg1Of 2,about
R11143 T16133 T16130 arg2Of kb,containing
R11144 T16133 T16132 arg1Of kb,2
R11145 T16133 T16134 arg1Of kb,of
R11146 T16133 T16136 arg1Of kb,upstream
R11147 T16135 T16134 arg2Of sequence,of
R11148 T16136 T16137 arg1Of upstream,of
R11149 T16143 T16137 arg2Of site,of
R11150 T16143 T16138 arg1Of site,the
R11151 T16143 T16139 arg1Of site,ɛ
R11152 T16143 T16140 arg1Of site,globin
R11153 T16143 T16141 arg1Of site,gene
R11154 T16143 T16142 arg1Of site,cap
R11155 T16145 T16144 arg2Of 50,[
R11156 T16146 T16144 arg3Of ],[
R11157 T16148 T16147 arg1Of numbering,Nucleotide
R11158 T16148 T16149 arg1Of numbering,is
R11159 T16148 T16150 arg1Of numbering,relative
R11160 T16150 T16149 arg2Of relative,is
R11161 T16150 T16151 arg1Of relative,to
R11162 T16155 T16151 arg2Of site,to
R11163 T16155 T16152 arg1Of site,the
R11164 T16155 T16153 arg1Of site,transcription
R11165 T16155 T16154 arg1Of site,start
R11166 T16159 T16156 arg1Of site,The
R11167 T16159 T16157 arg1Of site,transcriptional
R11168 T16159 T16158 arg1Of site,start
R11169 T16159 T16160 arg1Of site,is
R11170 T16159 T16161 arg2Of site,based
R11171 T16161 T16160 arg2Of based,is
R11172 T16161 T16162 arg1Of based,on
R11173 T16165 T16162 arg2Of cDNA,on
R11174 T16165 T16163 arg1Of cDNA,the
R11175 T16165 T16164 arg1Of cDNA,longest
R11176 T16165 T16166 arg1Of cDNA,in
R11177 T16168 T16169 arg1Of Fantom,(
R11178 T16171 T16169 arg2Of Annotation,(
R11179 T16171 T16170 arg1Of Annotation,Functional
R11180 T16171 T16172 arg1Of Annotation,of
R11181 T16173 T16172 arg2Of Mouse,of
R11182 T16174 T16169 arg3Of ),(
R11183 T16175 T16166 arg2Of database,in
R11184 T16175 T16167 arg1Of database,the
R11185 T16175 T16168 arg1Of database,Fantom
R11186 T16178 T16176 arg1Of primers,The
R11187 T16178 T16177 arg1Of primers,PCR
R11188 T16178 T16179 arg1Of primers,contained
R11189 T16180 T16181 arg1Of XhoI,and
R11190 T16182 T16181 arg2Of HindIII,and
R11191 T16183 T16179 arg2Of sites,contained
R11192 T16183 T16180 arg1Of sites,XhoI
R11193 T16183 T16182 arg1Of sites,HindIII
R11194 T16183 T16184 arg1Of sites,that
R11195 T16183 T16185 arg1Of sites,were
R11196 T16183 T16186 arg2Of sites,used
R11197 T16186 T16185 arg2Of used,were
R11198 T16188 T16186 arg3Of clone,used
R11199 T16188 T16187 arg1Of clone,to
R11200 T16188 T16193 arg1Of clone,upstream
R11201 T16192 T16188 arg2Of fragment,clone
R11202 T16192 T16189 arg1Of fragment,the
R11203 T16192 T16190 arg1Of fragment,ɛy
R11204 T16192 T16191 arg1Of fragment,promoter
R11205 T16193 T16194 arg1Of upstream,of
R11206 T16198 T16194 arg2Of gene,of
R11207 T16198 T16195 arg1Of gene,the
R11208 T16198 T16196 arg1Of gene,firefly
R11209 T16198 T16197 arg1Of gene,luciferase
R11210 T16198 T16199 arg1Of gene,in
R11211 T16201 T16200 arg1Of Basic,pGL3
R11212 T16203 T16204 arg1Of Promega,","
R11213 T16204 T16206 arg1Of ",",","
R11214 T16205 T16204 arg2Of Madison,","
R11215 T16206 T16208 arg1Of ",",","
R11216 T16207 T16206 arg2Of Wisconsin,","
R11217 T16208 T16199 arg2Of ",",in
R11218 T16208 T16201 arg1Of ",",Basic
R11219 T16208 T16202 arg2Of ",",(
R11220 T16210 T16208 arg2Of States,","
R11221 T16210 T16209 arg1Of States,United
R11222 T16211 T16202 arg3Of ),(
R11223 T16215 T16212 arg1Of fragment,A
R11224 T16215 T16213 arg1Of fragment,2.5-kb
R11225 T16215 T16214 arg1Of fragment,SstI/XhoI
R11226 T16215 T16216 arg1Of fragment,of
R11227 T16215 T16219 arg1Of fragment,(
R11228 T16215 T16227 arg1Of fragment,was
R11229 T16215 T16229 arg2Of fragment,inserted
R11230 T16217 T16216 arg2Of μLCRβ,of
R11231 T16217 T16218 arg1Of μLCRβ,9.3
R11232 T16221 T16220 arg1Of LCR,micro
R11233 T16221 T16222 arg1Of LCR,;
R11234 T16222 T16219 arg2Of ;,(
R11235 T16224 T16222 arg2Of 31,;
R11236 T16224 T16223 arg2Of 31,[
R11237 T16225 T16223 arg3Of ],[
R11238 T16226 T16219 arg3Of ),(
R11239 T16229 T16227 arg2Of inserted,was
R11240 T16229 T16228 arg1Of inserted,then
R11241 T16229 T16230 arg1Of inserted,upstream
R11242 T16229 T16235 arg1Of inserted,in
R11243 T16229 T16241 arg1Of inserted,","
R11244 T16229 T16242 modOf inserted,resulting
R11245 T16230 T16231 arg1Of upstream,of
R11246 T16234 T16231 arg2Of promoter,of
R11247 T16234 T16232 arg1Of promoter,the
R11248 T16234 T16233 arg1Of promoter,ɛy
R11249 T16239 T16238 arg1Of Basic,pGL3
R11250 T16240 T16235 arg2Of plasmid,in
R11251 T16240 T16236 arg1Of plasmid,the
R11252 T16240 T16237 arg1Of plasmid,above
R11253 T16240 T16239 arg1Of plasmid,Basic
R11254 T16242 T16243 arg1Of resulting,in
R11255 T16246 T16243 arg2Of construct,in
R11256 T16246 T16244 arg1Of construct,a
R11257 T16246 T16245 arg1Of construct,reporter
R11258 T16246 T16247 arg2Of construct,in
R11259 T16246 T16248 arg1Of construct,which
R11260 T16250 T16249 arg1Of expression,luciferase
R11261 T16250 T16251 arg1Of expression,is
R11262 T16250 T16252 arg2Of expression,driven
R11263 T16252 T16247 arg1Of driven,in
R11264 T16252 T16251 arg2Of driven,is
R11265 T16256 T16252 arg1Of promoter,driven
R11266 T16256 T16253 arg2Of promoter,by
R11267 T16256 T16254 arg1Of promoter,the
R11268 T16256 T16255 arg1Of promoter,ɛy
R11269 T16258 T16257 arg1Of series,A
R11270 T16258 T16259 arg1Of series,of
R11271 T16258 T16266 arg1Of series,were
R11272 T16258 T16267 arg2Of series,generated
R11273 T16261 T16259 arg2Of constructs,of
R11274 T16261 T16260 arg1Of constructs,deletion
R11275 T16261 T16262 arg1Of constructs,of
R11276 T16265 T16262 arg2Of promoter,of
R11277 T16265 T16263 arg1Of promoter,the
R11278 T16265 T16264 arg1Of promoter,ɛy
R11279 T16267 T16266 arg2Of generated,were
R11280 T16267 T16268 arg1Of generated,similarly
R11281 T16270 T16269 arg1Of primers,Forward
R11282 T16270 T16271 arg1Of primers,with
R11283 T16270 T16275 arg1Of primers,include
R11284 T16274 T16271 arg2Of site,with
R11285 T16274 T16272 arg1Of site,an
R11286 T16274 T16273 arg1Of site,XhoI
R11287 T16275 T16276 arg1Of include,:
R11288 T16277 T16275 arg2Of MHB1457,include
R11289 T16277 T16278 arg1Of MHB1457,","
R11290 T16277 T16285 arg1Of MHB1457,;
R11291 T16279 T16278 arg2Of 5′CCGCTCGAGTGCTAGGCAAACACTCA3′,","
R11292 T16279 T16280 arg1Of 5′CCGCTCGAGTGCTAGGCAAACACTCA3′,(
R11293 T16283 T16280 arg2Of −2052,(
R11294 T16283 T16281 arg1Of −2052,−2077
R11295 T16283 T16282 arg1Of −2052,to
R11296 T16284 T16280 arg3Of ),(
R11297 T16286 T16285 arg2Of MHB1503,;
R11298 T16286 T16287 arg1Of MHB1503,","
R11299 T16286 T16294 arg1Of MHB1503,;
R11300 T16288 T16287 arg2Of 5′CCGCTCGAGTCTCTACACTGTCACTCCCTG3′,","
R11301 T16288 T16289 arg1Of 5′CCGCTCGAGTCTCTACACTGTCACTCCCTG3′,(
R11302 T16292 T16289 arg2Of −605,(
R11303 T16292 T16290 arg1Of −605,−634
R11304 T16292 T16291 arg1Of −605,to
R11305 T16293 T16289 arg3Of ),(
R11306 T16295 T16294 arg2Of MHB1505,;
R11307 T16295 T16296 arg1Of MHB1505,","
R11308 T16295 T16303 arg1Of MHB1505,;
R11309 T16297 T16296 arg2Of 5′CCGCTCGAGGGAGCCAAAAAAAGAATGC3′,","
R11310 T16297 T16298 arg1Of 5′CCGCTCGAGGGAGCCAAAAAAAGAATGC3′,(
R11311 T16301 T16298 arg2Of −169,(
R11312 T16301 T16299 arg1Of −169,−197
R11313 T16301 T16300 arg1Of −169,to
R11314 T16302 T16298 arg3Of ),(
R11315 T16304 T16303 arg2Of MHB1506,;
R11316 T16304 T16305 arg1Of MHB1506,","
R11317 T16304 T16312 arg1Of MHB1506,;
R11318 T16306 T16305 arg2Of 5′CCGCTCGAGCTGACCAATGGCTTCAAAG3′,","
R11319 T16306 T16307 arg1Of 5′CCGCTCGAGCTGACCAATGGCTTCAAAG3′,(
R11320 T16310 T16307 arg2Of −58,(
R11321 T16310 T16308 arg1Of −58,−85
R11322 T16310 T16309 arg1Of −58,to
R11323 T16311 T16307 arg3Of ),(
R11324 T16313 T16314 arg1Of MHB1532,","
R11325 T16313 T16322 arg1Of MHB1532,and
R11326 T16315 T16314 arg2Of 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGA3′,","
R11327 T16315 T16316 arg1Of 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGA3′,(
R11328 T16319 T16316 arg2Of −34,(
R11329 T16319 T16317 arg1Of −34,−63
R11330 T16319 T16318 arg1Of −34,to
R11331 T16320 T16316 arg3Of ),(
R11332 T16322 T16312 arg2Of and,;
R11333 T16322 T16321 arg1Of and,;
R11334 T16323 T16322 arg2Of MHB1507,and
R11335 T16323 T16324 arg1Of MHB1507,","
R11336 T16326 T16324 arg2Of 3′,","
R11337 T16326 T16325 arg1Of 3′,5′CCGCTCGAGGTCTGCGAAGAATAAAAGGC
R11338 T16326 T16327 arg1Of 3′,(
R11339 T16330 T16327 arg2Of −9,(
R11340 T16330 T16328 arg1Of −9,−37
R11341 T16330 T16329 arg1Of −9,to
R11342 T16331 T16327 arg3Of ),(
R11343 T16334 T16332 arg1Of primers,All
R11344 T16334 T16333 arg1Of primers,forward
R11345 T16334 T16335 arg1Of primers,were
R11346 T16334 T16336 arg2Of primers,used
R11347 T16336 T16335 arg2Of used,were
R11348 T16336 T16337 arg1Of used,in
R11349 T16336 T16345 arg1Of used,:
R11350 T16336 T16346 arg1Of used,MHB1477
R11351 T16338 T16337 arg2Of combination,in
R11352 T16338 T16339 arg1Of combination,with
R11353 T16344 T16339 arg2Of site,with
R11354 T16344 T16340 arg1Of site,the
R11355 T16344 T16341 arg1Of site,reverse
R11356 T16344 T16342 arg1Of site,primer
R11357 T16344 T16343 arg1Of site,HindIII
R11358 T16346 T16347 arg1Of MHB1477,","
R11359 T16348 T16347 arg2Of 5′CGGAAGCTTGGGAGGTTGCTGGTGA3′,","
R11360 T16348 T16349 arg1Of 5′CGGAAGCTTGGGAGGTTGCTGGTGA3′,(
R11361 T16352 T16349 arg2Of +20,(
R11362 T16352 T16350 arg1Of +20,+45
R11363 T16352 T16351 arg1Of +20,to
R11364 T16353 T16349 arg3Of ),(
R11365 T16354 T16355 arg1Of Sox6-pcDNA3.1,[
R11366 T16354 T16358 arg1Of Sox6-pcDNA3.1,was
R11367 T16354 T16359 arg2Of Sox6-pcDNA3.1,used
R11368 T16354 T16361 arg1Of Sox6-pcDNA3.1,overexpress
R11369 T16356 T16355 arg2Of 15,[
R11370 T16357 T16355 arg3Of ],[
R11371 T16359 T16358 arg2Of used,was
R11372 T16361 T16359 arg3Of overexpress,used
R11373 T16361 T16360 arg1Of overexpress,to
R11374 T16362 T16361 arg2Of Sox6,overexpress
R11375 T16365 T16363 arg1Of version,A
R11376 T16365 T16364 arg2Of version,truncated
R11377 T16365 T16366 arg1Of version,of
R11378 T16365 T16379 arg1Of version,was
R11379 T16365 T16380 arg2Of version,generated
R11380 T16370 T16366 arg2Of construct,of
R11381 T16370 T16367 arg1Of construct,the
R11382 T16370 T16368 arg1Of construct,Sox6
R11383 T16370 T16369 arg1Of construct,overexpression
R11384 T16370 T16371 arg1Of construct,(
R11385 T16370 T16374 arg1Of construct,that
R11386 T16370 T16375 arg1Of construct,lacks
R11387 T16372 T16371 arg2Of Sox6-ΔHMG-pcDNA3.1,(
R11388 T16373 T16371 arg3Of ),(
R11389 T16378 T16375 arg2Of domain,lacks
R11390 T16378 T16376 arg1Of domain,the
R11391 T16378 T16377 arg1Of domain,HMG
R11392 T16380 T16379 arg2Of generated,was
R11393 T16380 T16381 arg1Of generated,","
R11394 T16380 T16382 arg1Of generated,as
R11395 T16383 T16382 arg2Of described,as
R11396 T16385 T16383 arg1Of others,described
R11397 T16385 T16384 arg2Of others,by
R11398 T16385 T16386 arg1Of others,[
R11399 T16387 T16386 arg2Of 32,[
R11400 T16388 T16386 arg3Of ],[
R11401 T16389 T16390 arg1Of Mutagenesis,of
R11402 T16389 T16399 arg1Of Mutagenesis,were
R11403 T16389 T16400 arg2Of Mutagenesis,done
R11404 T16394 T16390 arg2Of sites,of
R11405 T16394 T16391 arg1Of sites,Sox/Sox6
R11406 T16394 T16392 arg1Of sites,consensus
R11407 T16394 T16393 arg1Of sites,binding
R11408 T16394 T16395 arg1Of sites,of
R11409 T16398 T16395 arg2Of promoter,of
R11410 T16398 T16396 arg1Of promoter,the
R11411 T16398 T16397 arg1Of promoter,ɛy
R11412 T16400 T16399 arg2Of done,were
R11413 T16402 T16400 arg1Of PCR,done
R11414 T16402 T16401 arg2Of PCR,by
R11415 T16404 T16403 arg1Of primers,Forward
R11416 T16404 T16405 arg2Of primers,used
R11417 T16404 T16414 arg1Of primers,include
R11418 T16407 T16405 arg3Of generate,used
R11419 T16407 T16406 arg1Of generate,to
R11420 T16413 T16407 arg2Of constructs,generate
R11421 T16413 T16408 arg1Of constructs,these
R11422 T16413 T16409 arg2Of constructs,mutagenized
R11423 T16413 T16410 arg1Of constructs,ɛy
R11424 T16413 T16411 arg1Of constructs,promoter
R11425 T16413 T16412 arg1Of constructs,reporter
R11426 T16414 T16415 arg1Of include,:
R11427 T16416 T16414 arg2Of MHB1661,include
R11428 T16416 T16417 arg1Of MHB1661,","
R11429 T16416 T16424 arg1Of MHB1661,;
R11430 T16418 T16417 arg2Of 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′,","
R11431 T16418 T16419 arg1Of 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′,(
R11432 T16422 T16419 arg2Of −19,(
R11433 T16422 T16420 arg1Of −19,−63
R11434 T16422 T16421 arg1Of −19,to
R11435 T16423 T16419 arg3Of ),(
R11436 T16425 T16426 arg1Of MHB1662,","
R11437 T16425 T16434 arg1Of MHB1662,and
R11438 T16427 T16426 arg2Of 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′,","
R11439 T16427 T16428 arg1Of 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′,(
R11440 T16431 T16428 arg2Of −16,(
R11441 T16431 T16429 arg1Of −16,−63
R11442 T16431 T16430 arg1Of −16,to
R11443 T16432 T16428 arg3Of ),(
R11444 T16434 T16424 arg2Of and,;
R11445 T16434 T16433 arg1Of and,;
R11446 T16435 T16434 arg2Of MHB1663,and
R11447 T16435 T16436 arg1Of MHB1663,","
R11448 T16438 T16436 arg2Of 3′,","
R11449 T16438 T16437 arg1Of 3′,5′CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
R11450 T16438 T16439 arg1Of 3′,(
R11451 T16442 T16439 arg2Of −18,(
R11452 T16442 T16440 arg1Of −18,−63
R11453 T16442 T16441 arg1Of −18,to
R11454 T16443 T16439 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T16053 1883-1885 Protein denotes ɛy
T16052 1738-1742 Protein denotes Sox6
T16051 1707-1711 Protein denotes Sox6
T16050 1674-1678 Protein denotes Sox6
T16049 1631-1635 Protein denotes Sox6
T16048 1063-1065 Protein denotes ɛy
T16047 1011-1013 Protein denotes ɛy
T16046 972-982 Protein denotes luciferase
T16045 884-886 Protein denotes ɛy
T16044 715-725 Protein denotes luciferase
T16043 670-672 Protein denotes ɛy
T16042 381-389 Protein denotes ɛ globin
T16041 271-272 Protein denotes ɛ
T16040 170-179 Protein denotes ɛy globin
T16039 114-116 Protein denotes ɛy
T16038 26-28 Protein denotes ɛy

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T16450 1847-1851 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T16449 1738-1742 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T16448 1707-1711 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T16447 1674-1678 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T16446 1631-1635 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T16445 972-982 http://www.uniprot.org/uniprot/P08659 denotes luciferase
T16444 715-725 http://www.uniprot.org/uniprot/P08659 denotes luciferase

GO-BP

Id Subject Object Predicate Lexical cue
T16013 480-495 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptional
T16012 450-463 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T16011 273-287 http://purl.obolibrary.org/obo/GO_0016458 denotes gene silencing
T16010 383-389 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T16009 173-179 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T16056 1862-1869 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T16055 383-389 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T16054 173-179 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

sentences

Id Subject Object Predicate Lexical cue
T16008 1913-2231 Sentence denotes Forward primers used to generate these mutagenized ɛy promoter reporter constructs include: MHB1661, 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′ (−63 to −19); MHB1662, 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′ (−63 to −16); and MHB1663, 5′CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA 3′ (−63 to −18).
T16007 1828-1912 Sentence denotes Mutagenesis of Sox/Sox6 consensus binding sites of the ɛy promoter were done by PCR.
T16006 1680-1827 Sentence denotes A truncated version of the Sox6 overexpression construct (Sox6-ΔHMG-pcDNA3.1) that lacks the HMG domain was generated, as described by others [32].
T16005 1631-1679 Sentence denotes Sox6-pcDNA3.1 [15] was used to overexpress Sox6.
T16004 1495-1630 Sentence denotes All forward primers were used in combination with the reverse primer HindIII site: MHB1477, 5′CGGAAGCTTGGGAGGTTGCTGGTGA3′ (+45 to +20).
T16003 1101-1494 Sentence denotes Forward primers with an XhoI site include: MHB1457, 5′CCGCTCGAGTGCTAGGCAAACACTCA3′ (−2077 to −2052); MHB1503, 5′CCGCTCGAGTCTCTACACTGTCACTCCCTG3′ (−634 to −605); MHB1505, 5′CCGCTCGAGGGAGCCAAAAAAAGAATGC3′ (−197 to −169); MHB1506, 5′CCGCTCGAGCTGACCAATGGCTTCAAAG3′ (−85 to −58); MHB1532, 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGA3′ (−63 to −34); and MHB1507, 5′CCGCTCGAGGTCTGCGAAGAATAAAAGGC 3′ (−37 to −9).
T16002 1024-1100 Sentence denotes A series of deletion constructs of the ɛy promoter were generated similarly.
T16001 791-1023 Sentence denotes A 2.5-kb SstI/XhoI fragment of μLCRβ 9.3 (micro LCR; [31]) was then inserted upstream of the ɛy promoter in the above pGL3 Basic plasmid, resulting in a reporter construct in which luciferase expression is driven by the ɛy promoter.
T16000 593-790 Sentence denotes The PCR primers contained XhoI and HindIII sites that were used to clone the ɛy promoter fragment upstream of the firefly luciferase gene in pGL3 Basic (Promega, Madison, Wisconsin, United States).
T15999 476-592 Sentence denotes The transcriptional start site is based on the longest cDNA in the Fantom (Functional Annotation of Mouse) database.
T15998 410-475 Sentence denotes Nucleotide numbering is relative to the transcription start site.
T15997 136-409 Sentence denotes A 2.2-kb fragment upstream of the ɛy globin initiation codon (ATG) was used, because it has been shown that all sequences required for ɛ gene silencing are located within a 3.7-kb EcoRI fragment containing about 2 kb of sequence upstream of the ɛ globin gene cap site [50].
T15996 22-135 Sentence denotes The ɛy promoter deletion reporter plasmid (E-luc) was generated by PCR amplification of the ɛy proximal promoter.
T15995 0-21 Sentence denotes Plasmid construction.
T251 0-21 Sentence denotes Plasmid construction.
T252 22-135 Sentence denotes The ɛy promoter deletion reporter plasmid (E-luc) was generated by PCR amplification of the ɛy proximal promoter.
T253 136-409 Sentence denotes A 2.2-kb fragment upstream of the ɛy globin initiation codon (ATG) was used, because it has been shown that all sequences required for ɛ gene silencing are located within a 3.7-kb EcoRI fragment containing about 2 kb of sequence upstream of the ɛ globin gene cap site [50].
T254 410-475 Sentence denotes Nucleotide numbering is relative to the transcription start site.
T255 476-592 Sentence denotes The transcriptional start site is based on the longest cDNA in the Fantom (Functional Annotation of Mouse) database.
T256 593-790 Sentence denotes The PCR primers contained XhoI and HindIII sites that were used to clone the ɛy promoter fragment upstream of the firefly luciferase gene in pGL3 Basic (Promega, Madison, Wisconsin, United States).
T257 791-1023 Sentence denotes A 2.5-kb SstI/XhoI fragment of μLCRβ 9.3 (micro LCR; [31]) was then inserted upstream of the ɛy promoter in the above pGL3 Basic plasmid, resulting in a reporter construct in which luciferase expression is driven by the ɛy promoter.
T258 1024-1100 Sentence denotes A series of deletion constructs of the ɛy promoter were generated similarly.
T259 1101-1494 Sentence denotes Forward primers with an XhoI site include: MHB1457, 5′CCGCTCGAGTGCTAGGCAAACACTCA3′ (−2077 to −2052); MHB1503, 5′CCGCTCGAGTCTCTACACTGTCACTCCCTG3′ (−634 to −605); MHB1505, 5′CCGCTCGAGGGAGCCAAAAAAAGAATGC3′ (−197 to −169); MHB1506, 5′CCGCTCGAGCTGACCAATGGCTTCAAAG3′ (−85 to −58); MHB1532, 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGA3′ (−63 to −34); and MHB1507, 5′CCGCTCGAGGTCTGCGAAGAATAAAAGGC 3′ (−37 to −9).
T260 1495-1630 Sentence denotes All forward primers were used in combination with the reverse primer HindIII site: MHB1477, 5′CGGAAGCTTGGGAGGTTGCTGGTGA3′ (+45 to +20).
T261 1631-1679 Sentence denotes Sox6-pcDNA3.1 [15] was used to overexpress Sox6.
T262 1680-1827 Sentence denotes A truncated version of the Sox6 overexpression construct (Sox6-ΔHMG-pcDNA3.1) that lacks the HMG domain was generated, as described by others [32].
T263 1828-1912 Sentence denotes Mutagenesis of Sox/Sox6 consensus binding sites of the ɛy promoter were done by PCR.
T264 1913-2231 Sentence denotes Forward primers used to generate these mutagenized ɛy promoter reporter constructs include: MHB1661, 5′CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3′ (−63 to −19); MHB1662, 5′CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3′ (−63 to −16); and MHB1663, 5′CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA 3′ (−63 to −18).

simple1

Id Subject Object Predicate Lexical cue
T16072 1883-1885 Protein denotes ɛy
T16071 1738-1742 Protein denotes Sox6
T16070 1707-1711 Protein denotes Sox6
T16069 1674-1678 Protein denotes Sox6
T16068 1631-1635 Protein denotes Sox6
T16067 1063-1065 Protein denotes ɛy
T16066 1011-1013 Protein denotes ɛy
T16065 972-982 Protein denotes luciferase
T16064 884-886 Protein denotes ɛy
T16063 715-725 Protein denotes luciferase
T16062 670-672 Protein denotes ɛy
T16061 381-389 Protein denotes ɛ globin
T16060 271-272 Protein denotes ɛ
T16059 170-179 Protein denotes ɛy globin
T16058 114-116 Protein denotes ɛy
T16057 26-28 Protein denotes ɛy

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T17096 1662-1673 Gene_expression denotes overexpress
T17095 1662-1673 Positive_regulation denotes overexpress
T17094 997-1003 Positive_regulation denotes driven
T17093 983-993 Gene_expression denotes expression
T17092 278-287 Negative_regulation denotes silencing
T17091 1883-1885 Protein denotes ɛy
T17090 1738-1742 Protein denotes Sox6
T17089 1707-1711 Protein denotes Sox6
T17088 1674-1678 Protein denotes Sox6
T17087 1631-1635 Protein denotes Sox6
T17086 1063-1065 Protein denotes ɛy
T17085 972-982 Protein denotes luciferase
T17084 884-886 Protein denotes ɛy
T17083 1011-1013 Protein denotes ɛy
T17082 715-725 Protein denotes luciferase
T17081 670-672 Protein denotes ɛy
T17080 381-389 Protein denotes ɛ globin
T17079 271-272 Protein denotes ɛ
T17078 170-179 Protein denotes ɛy globin
T17077 114-116 Protein denotes ɛy
T17076 26-28 Protein denotes ɛy
R11932 T17079 T17092 themeOf ɛ,silencing
R11933 T17085 T17093 themeOf luciferase,expression
R11934 T17088 T17096 themeOf Sox6,overexpress
R11935 T17093 T17094 themeOf expression,driven
R11936 T17096 T17095 themeOf overexpress,overexpress

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T16456 670-672 Protein denotes ɛy
T16455 381-389 Protein denotes ɛ globin
T16454 271-272 Protein denotes ɛ
T16453 170-179 Protein denotes ɛy globin
T16452 114-116 Protein denotes ɛy
T16451 26-28 Protein denotes ɛy
T16472 1712-1726 Positive_regulation denotes overexpression
T16471 1662-1673 Gene_expression denotes overexpress
T16470 983-993 Gene_expression denotes expression
T16469 258-266 Positive_regulation denotes required
T16468 278-287 Negative_regulation denotes silencing
T16467 38-46 Negative_regulation denotes deletion
T16466 1883-1885 Protein denotes ɛy
T16465 1738-1742 Protein denotes Sox6
T16464 1707-1711 Protein denotes Sox6
T16463 1674-1678 Protein denotes Sox6
T16462 1631-1635 Protein denotes Sox6
T16461 1063-1065 Protein denotes ɛy
T16460 972-982 Protein denotes luciferase
T16459 884-886 Protein denotes ɛy
T16458 1011-1013 Protein denotes ɛy
T16457 715-725 Protein denotes luciferase
R11455 T16451 T16467 themeOf ɛy,deletion
R11456 T16454 T16468 themeOf ɛ,silencing
R11457 T16460 T16470 themeOf luciferase,expression
R11458 T16463 T16471 themeOf Sox6,overexpress
R11459 T16464 T16472 themeOf Sox6,overexpression
R11460 T16468 T16469 themeOf silencing,required

DLUT931

Id Subject Object Predicate Lexical cue
T16542 1712-1726 Positive_regulation denotes overexpression
T16541 1662-1673 Gene_expression denotes overexpress
T16540 983-993 Gene_expression denotes expression
T16539 258-266 Positive_regulation denotes required
T16538 278-287 Negative_regulation denotes silencing
T16537 38-46 Negative_regulation denotes deletion
T16536 1883-1885 Protein denotes ɛy
T16535 1738-1742 Protein denotes Sox6
T16534 1707-1711 Protein denotes Sox6
T16533 1674-1678 Protein denotes Sox6
T16532 1631-1635 Protein denotes Sox6
T16531 1063-1065 Protein denotes ɛy
T16530 972-982 Protein denotes luciferase
T16529 884-886 Protein denotes ɛy
T16528 1011-1013 Protein denotes ɛy
T16527 715-725 Protein denotes luciferase
T16526 670-672 Protein denotes ɛy
T16525 381-389 Protein denotes ɛ globin
T16524 271-272 Protein denotes ɛ
T16523 170-179 Protein denotes ɛy globin
T16522 114-116 Protein denotes ɛy
T16521 26-28 Protein denotes ɛy
R11469 T16521 T16537 themeOf ɛy,deletion
R11470 T16524 T16538 themeOf ɛ,silencing
R11471 T16530 T16540 themeOf luciferase,expression
R11472 T16533 T16541 themeOf Sox6,overexpress
R11473 T16534 T16542 themeOf Sox6,overexpression
R11474 T16538 T16539 themeOf silencing,required

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T17055 114-116 Protein denotes ɛy
T17054 1883-1885 Protein denotes ɛy
T17053 739-789 Protein denotes Basic (Promega, Madison, Wisconsin, United States)
T17052 107-134 Entity denotes of the ɛy proximal promoter
T17051 399-408 Entity denotes site [50]
T17050 173-179 Protein denotes globin
T17049 1769-1783 Entity denotes the HMG domain
T17048 383-389 Protein denotes globin
T17047 1056-1074 Entity denotes of the ɛy promoter
T17046 89-92 Protein denotes PCR
T17045 29-37 Entity denotes promoter
T17044 670-672 Protein denotes ɛy
T17043 619-623 Protein denotes XhoI
T17042 1707-1711 Protein denotes Sox6
T17041 1011-1013 Protein denotes ɛy
T17040 884-886 Protein denotes ɛy
T17039 1964-1975 Entity denotes ɛy promoter
T17038 666-690 Entity denotes the ɛy promoter fragment
T17037 1674-1678 Protein denotes Sox6
T17036 26-28 Protein denotes ɛy
T17035 597-600 Protein denotes PCR
T17034 410-420 Entity denotes Nucleotide
T17033 377-398 Protein denotes the ɛ globin gene cap
T17032 307-352 Entity denotes a 3.7-kb EcoRI fragment containing about 2 kb
T17031 1876-1894 Entity denotes of the ɛy promoter
T17030 1905-1911 Protein denotes by PCR
T17029 666-690 Entity denotes the ɛy promoter fragment
T17075 1662-1678 Gene_expression denotes overexpress Sox6
T17074 1662-1678 Positive_regulation denotes overexpress Sox6
T17073 1700-1757 Positive_regulation denotes of the Sox6 overexpression construct (Sox6-ΔHMG-pcDNA3.1)
T17072 1700-1757 Gene_expression denotes of the Sox6 overexpression construct (Sox6-ΔHMG-pcDNA3.1)
T17071 166-202 Positive_regulation denotes the ɛy globin initiation codon (ATG)
T17070 707-725 Protein denotes firefly luciferase
T17069 703-730 Protein denotes the firefly luciferase gene
T17068 519-535 Entity denotes the longest cDNA
T17067 1545-1576 Entity denotes the reverse primer HindIII site
T17066 1122-1134 Entity denotes an XhoI site
T17065 1004-1022 Entity denotes by the ɛy promoter
T17064 271-287 Protein denotes ɛ gene silencing
T17063 381-382 Protein denotes ɛ
T17062 1125-1129 Protein denotes XhoI
T17061 833-848 Protein denotes micro LCR; [31]
T17060 1964-1966 Protein denotes ɛy
T17059 1843-1911 Protein denotes Sox/Sox6 consensus binding sites of the ɛy promoter were done by PCR
T17058 880-908 Entity denotes the ɛy promoter in the above
T17057 170-172 Protein denotes ɛy
T17056 628-641 Entity denotes HindIII sites
R11921 T17031 T17054 partOf of the ɛy promoter,ɛy
R11922 T17037 T17074 themeOf Sox6,overexpress Sox6
R11923 T17037 T17075 themeOf Sox6,overexpress Sox6
R11924 T17038 T17044 partOf the ɛy promoter fragment,ɛy
R11925 T17039 T17060 partOf ɛy promoter,ɛy
R11926 T17042 T17072 themeOf Sox6,of the Sox6 overexpression construct (Sox6-ΔHMG-pcDNA3.1)
R11927 T17042 T17073 themeOf Sox6,of the Sox6 overexpression construct (Sox6-ΔHMG-pcDNA3.1)
R11928 T17050 T17071 themeOf globin,the ɛy globin initiation codon (ATG)
R11929 T17052 T17055 partOf of the ɛy proximal promoter,ɛy
R11930 T17058 T17040 partOf the ɛy promoter in the above,ɛy
R11931 T17065 T17041 partOf by the ɛy promoter,ɛy

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T16996 2230-2231 . denotes .
T16995 2229-2230 -RRB- denotes )
T16994 2227-2229 CD denotes 18
T16993 2226-2227 CD denotes −
T16992 2223-2225 TO denotes to
T16991 2220-2222 CD denotes 63
T16990 2219-2220 FW denotes −
T16989 2218-2219 -LRB- denotes (
T16988 2216-2217 NN denotes ′
T16987 2215-2216 CD denotes 3
T16986 2168-2214 NNP denotes CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
T16985 2167-2168 NN denotes ′
T16984 2166-2167 CD denotes 5
T16983 2164-2165 , denotes ,
T16982 2157-2164 NNP denotes MHB1663
T16981 2153-2156 CC denotes and
T16980 2151-2152 : denotes ;
T16979 2150-2151 -RRB- denotes )
T16978 2148-2150 CD denotes 16
T16977 2147-2148 CD denotes −
T16976 2144-2146 TO denotes to
T16975 2141-2143 CD denotes 63
T16974 2140-2141 FW denotes −
T16973 2139-2140 -LRB- denotes (
T16972 2137-2138 NN denotes ′
T16971 2089-2137 CD denotes CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3
T16970 2088-2089 NN denotes ′
T16969 2087-2088 CD denotes 5
T16968 2085-2086 , denotes ,
T16967 2078-2085 NNP denotes MHB1662
T16966 2076-2077 : denotes ;
T16965 2075-2076 -RRB- denotes )
T16964 2073-2075 CD denotes 19
T16963 2072-2073 CD denotes −
T16962 2069-2071 TO denotes to
T16961 2066-2068 CD denotes 63
T16960 2065-2066 FW denotes −
T16959 2064-2065 -LRB- denotes (
T16958 2062-2063 NN denotes ′
T16957 2016-2062 CD denotes CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3
T16956 2015-2016 NN denotes ′
T16955 2014-2015 CD denotes 5
T16954 2012-2013 , denotes ,
T16953 2005-2012 CD denotes MHB1661
T16952 2003-2004 : denotes :
T16951 1996-2003 VBP denotes include
T16950 1985-1995 NNS denotes constructs
T16949 1976-1984 NN denotes reporter
T16948 1967-1975 NN denotes promoter
T16947 1964-1966 NN denotes ɛy
T16946 1952-1963 VBN denotes mutagenized
T16945 1946-1951 DT denotes these
T16944 1937-1945 VB denotes generate
T16943 1934-1936 TO denotes to
T16942 1929-1933 VBN denotes used
T16941 1921-1928 NNS denotes primers
T16940 1913-1920 RB denotes Forward
T16939 1911-1912 . denotes .
T16938 1908-1911 NNP denotes PCR
T16937 1905-1907 IN denotes by
T16936 1900-1904 VBN denotes done
T16935 1895-1899 VBD denotes were
T16934 1886-1894 NN denotes promoter
T16933 1883-1885 JJ denotes ɛy
T16932 1879-1882 DT denotes the
T16931 1876-1878 IN denotes of
T16930 1870-1875 NNS denotes sites
T16929 1862-1869 JJ denotes binding
T16928 1852-1861 NN denotes consensus
T16927 1843-1851 NNP denotes Sox/Sox6
T16926 1840-1842 IN denotes of
T16925 1828-1839 NNP denotes Mutagenesis
T16924 1826-1827 . denotes .
T16923 1825-1826 NNP denotes ]
T16922 1823-1825 CD denotes 32
T16921 1822-1823 NNP denotes [
T16920 1815-1821 NNS denotes others
T16919 1812-1814 IN denotes by
T16918 1802-1811 VBN denotes described
T16917 1799-1801 IN denotes as
T16916 1797-1798 , denotes ,
T16915 1788-1797 VBN denotes generated
T16914 1784-1787 VBD denotes was
T16913 1777-1783 NN denotes domain
T16912 1773-1776 NNP denotes HMG
T16911 1769-1772 DT denotes the
T16910 1763-1768 VBZ denotes lacks
T16909 1758-1762 WDT denotes that
T16908 1756-1757 -RRB- denotes )
T16907 1754-1756 CD denotes .1
T16906 1738-1754 JJ denotes Sox6-ΔHMG-pcDNA3
T16905 1737-1738 -LRB- denotes (
T16904 1727-1736 VBP denotes construct
T16903 1712-1726 NN denotes overexpression
T16902 1707-1711 JJ denotes Sox6
T16901 1703-1706 DT denotes the
T16900 1700-1702 IN denotes of
T16899 1692-1699 NN denotes version
T16898 1682-1691 VBN denotes truncated
T16897 1680-1681 DT denotes A
T16896 1678-1679 . denotes .
T16895 1674-1678 NNP denotes Sox6
T16894 1662-1673 VB denotes overexpress
T16893 1659-1661 TO denotes to
T16892 1654-1658 VBN denotes used
T16891 1650-1653 VBD denotes was
T16890 1648-1649 NNP denotes ]
T16889 1646-1648 CD denotes 15
T16888 1645-1646 NNP denotes [
T16887 1642-1644 CD denotes .1
T16886 1631-1642 JJ denotes Sox6-pcDNA3
T16885 1629-1630 . denotes .
T16884 1628-1629 -RRB- denotes )
T16873 1576-1577 : denotes :
T16872 1572-1576 NN denotes site
T16871 1564-1571 NNP denotes HindIII
T16870 1557-1563 NN denotes primer
T16869 1549-1556 NN denotes reverse
T16868 1545-1548 DT denotes the
T16867 1540-1544 IN denotes with
T16866 1528-1539 NN denotes combination
T16865 1525-1527 IN denotes in
T16864 1520-1524 VBN denotes used
T16863 1515-1519 VBD denotes were
T16862 1507-1514 NNS denotes primers
T16861 1499-1506 RB denotes forward
T16860 1495-1498 DT denotes All
T16859 1493-1494 . denotes .
T16858 1492-1493 -RRB- denotes )
T16857 1491-1492 CD denotes 9
T16856 1490-1491 CD denotes −
T16855 1487-1489 TO denotes to
T16854 1484-1486 CD denotes 37
T16853 1483-1484 FW denotes −
T16852 1482-1483 -LRB- denotes (
T16851 1480-1481 NN denotes ′
T16850 1479-1480 CD denotes 3
T16849 1449-1478 NNP denotes CCGCTCGAGGTCTGCGAAGAATAAAAGGC
T16848 1448-1449 NN denotes ′
T16847 1447-1448 CD denotes 5
T16846 1445-1446 , denotes ,
T16845 1438-1445 NNP denotes MHB1507
T16844 1434-1437 CC denotes and
T16843 1432-1433 : denotes ;
T16842 1431-1432 -RRB- denotes )
T16841 1429-1431 CD denotes 34
T16840 1428-1429 CD denotes −
T16839 1425-1427 TO denotes to
T16838 1422-1424 CD denotes 63
T16837 1421-1422 FW denotes −
T16836 1420-1421 -LRB- denotes (
T16835 1418-1419 NN denotes ′
T16834 1387-1418 CD denotes CCGCTCGAGAATGCAGAACAAAGGGTCAGA3
T16833 1386-1387 NN denotes ′
T16832 1385-1386 CD denotes 5
T16831 1383-1384 , denotes ,
T16830 1376-1383 NNP denotes MHB1532
T16829 1374-1375 : denotes ;
T16828 1373-1374 -RRB- denotes )
T16827 1371-1373 CD denotes 58
T16826 1370-1371 CD denotes −
T16825 1367-1369 TO denotes to
T16824 1364-1366 CD denotes 85
T16823 1363-1364 FW denotes −
T16822 1362-1363 -LRB- denotes (
T16821 1360-1361 NN denotes ′
T16820 1331-1360 CD denotes CCGCTCGAGCTGACCAATGGCTTCAAAG3
T16819 1330-1331 NN denotes ′
T16818 1329-1330 CD denotes 5
T16817 1327-1328 , denotes ,
T16816 1320-1327 NNP denotes MHB1506
T16815 1318-1319 : denotes ;
T16814 1317-1318 -RRB- denotes )
T16813 1314-1317 CD denotes 169
T16812 1313-1314 CD denotes −
T16811 1310-1312 TO denotes to
T16810 1306-1309 CD denotes 197
T16809 1305-1306 FW denotes −
T16808 1304-1305 -LRB- denotes (
T16807 1302-1303 NN denotes ′
T16806 1273-1302 CD denotes CCGCTCGAGGGAGCCAAAAAAAGAATGC3
T16805 1272-1273 NN denotes ′
T16804 1271-1272 CD denotes 5
T16803 1269-1270 , denotes ,
T16802 1262-1269 NNP denotes MHB1505
T16801 1260-1261 : denotes ;
T16800 1259-1260 -RRB- denotes )
T16799 1256-1259 CD denotes 605
T16798 1255-1256 CD denotes −
T16797 1252-1254 TO denotes to
T16796 1248-1251 CD denotes 634
T16795 1247-1248 FW denotes −
T16794 1246-1247 -LRB- denotes (
T16793 1244-1245 NN denotes ′
T16792 1213-1244 CD denotes CCGCTCGAGTCTCTACACTGTCACTCCCTG3
T16791 1212-1213 NN denotes ′
T16790 1211-1212 CD denotes 5
T16789 1209-1210 , denotes ,
T16788 1202-1209 NNP denotes MHB1503
T16787 1200-1201 : denotes ;
T16786 1199-1200 -RRB- denotes )
T16785 1195-1199 CD denotes 2052
T16784 1194-1195 CD denotes −
T16783 1191-1193 TO denotes to
T16782 1186-1190 CD denotes 2077
T16781 1185-1186 FW denotes −
T16780 1184-1185 -LRB- denotes (
T16779 1182-1183 NN denotes ′
T16778 1155-1182 CD denotes CCGCTCGAGTGCTAGGCAAACACTCA3
T16777 1154-1155 NN denotes ′
T16776 1153-1154 CD denotes 5
T16775 1151-1152 , denotes ,
T16774 1144-1151 NNP denotes MHB1457
T16773 1142-1143 : denotes :
T16772 1135-1142 VBP denotes include
T16771 1130-1134 NN denotes site
T16770 1125-1129 NNP denotes XhoI
T16769 1122-1124 DT denotes an
T16768 1117-1121 IN denotes with
T16767 1109-1116 NNS denotes primers
T16766 1101-1108 RB denotes Forward
T16765 1099-1100 . denotes .
T16764 1090-1099 RB denotes similarly
T16763 1080-1089 VBN denotes generated
T16762 1075-1079 VBD denotes were
T16761 1066-1074 NN denotes promoter
T16760 1063-1065 JJ denotes ɛy
T16759 1059-1062 DT denotes the
T16758 1056-1058 IN denotes of
T16757 1045-1055 NNS denotes constructs
T16756 1036-1044 NN denotes deletion
T16755 1033-1035 IN denotes of
T16754 1026-1032 NN denotes series
T16753 1024-1025 DT denotes A
T16752 1022-1023 . denotes .
T16751 1014-1022 NN denotes promoter
T16750 1011-1013 JJ denotes ɛy
T16749 1007-1010 DT denotes the
T16748 1004-1006 IN denotes by
T16747 997-1003 VBN denotes driven
T16746 994-996 VBZ denotes is
T16745 983-993 NN denotes expression
T16744 972-982 NN denotes luciferase
T16743 966-971 WDT denotes which
T16742 963-965 IN denotes in
T16741 953-962 VB denotes construct
T16740 944-952 NN denotes reporter
T16739 942-943 DT denotes a
T16738 939-941 IN denotes in
T16737 929-938 VBG denotes resulting
T16736 927-928 , denotes ,
T16735 920-927 NN denotes plasmid
T16734 914-919 JJ denotes Basic
T16733 909-913 JJ denotes pGL3
T16732 903-908 JJ denotes above
T16731 899-902 DT denotes the
T16730 896-898 IN denotes in
T16729 887-895 NN denotes promoter
T16728 884-886 JJ denotes ɛy
T16727 880-883 DT denotes the
T16726 877-879 IN denotes of
T16725 868-876 RB denotes upstream
T16724 859-867 VBN denotes inserted
T16723 854-858 RB denotes then
T16722 850-853 VBD denotes was
T16721 848-849 -RRB- denotes )
T16720 847-848 NNP denotes ]
T16719 845-847 CD denotes 31
T16718 844-845 NNP denotes [
T16717 842-843 : denotes ;
T16716 839-842 NNP denotes LCR
T16715 833-838 NN denotes micro
T16714 832-833 -LRB- denotes (
T16713 828-831 CD denotes 9.3
T16712 822-827 NNP denotes μLCRβ
T16711 819-821 IN denotes of
T16710 810-818 NN denotes fragment
T16709 800-809 NNP denotes SstI/XhoI
T16708 793-799 JJ denotes 2.5-kb
T16707 791-792 DT denotes A
T16706 789-790 . denotes .
T16705 788-789 -RRB- denotes )
T16704 782-788 NNPS denotes States
T16703 775-781 NNP denotes United
T16702 773-774 , denotes ,
T16701 764-773 NNP denotes Wisconsin
T16700 762-763 , denotes ,
T16699 755-762 NNP denotes Madison
T16698 753-754 , denotes ,
T16697 746-753 NNP denotes Promega
T16696 745-746 -LRB- denotes (
T16695 739-744 NNP denotes Basic
T16694 734-738 NNP denotes pGL3
T16693 731-733 IN denotes in
T16692 726-730 NN denotes gene
T16691 715-725 NN denotes luciferase
T16690 707-714 JJ denotes firefly
T16689 703-706 DT denotes the
T16688 700-702 IN denotes of
T16687 691-699 RB denotes upstream
T16686 682-690 NN denotes fragment
T16685 673-681 NN denotes promoter
T16684 670-672 JJ denotes ɛy
T16683 666-669 DT denotes the
T16682 660-665 VB denotes clone
T16681 657-659 TO denotes to
T16680 652-656 VBN denotes used
T16679 647-651 VBD denotes were
T16678 642-646 WDT denotes that
T16677 636-641 NNS denotes sites
T16676 628-635 NNP denotes HindIII
T16675 624-627 CC denotes and
T16674 619-623 NNP denotes XhoI
T16673 609-618 VBD denotes contained
T16672 601-608 NNS denotes primers
T16671 597-600 NNP denotes PCR
T16670 593-596 DT denotes The
T16669 591-592 . denotes .
T16668 583-591 NN denotes database
T16667 581-582 -RRB- denotes )
T16666 576-581 NNP denotes Mouse
T16665 573-575 IN denotes of
T16664 562-572 NNP denotes Annotation
T16663 551-561 NNP denotes Functional
T16662 550-551 -LRB- denotes (
T16661 543-549 NNP denotes Fantom
T16660 539-542 DT denotes the
T16659 536-538 IN denotes in
T16658 531-535 NN denotes cDNA
T16635 404-405 NNP denotes [
T16634 399-403 NN denotes site
T16633 395-398 NN denotes cap
T16632 390-394 NN denotes gene
T16631 383-389 NN denotes globin
T16630 381-382 NN denotes ɛ
T16629 377-380 DT denotes the
T16628 374-376 IN denotes of
T16627 365-373 RB denotes upstream
T16626 356-364 NN denotes sequence
T16625 353-355 IN denotes of
T16624 350-352 NN denotes kb
T16623 348-349 CD denotes 2
T16622 342-347 IN denotes about
T16621 331-341 VBG denotes containing
T16620 322-330 NN denotes fragment
T16619 316-321 NNP denotes EcoRI
T16618 309-315 JJ denotes 3.7-kb
T16617 307-308 DT denotes a
T16616 300-306 IN denotes within
T16615 292-299 VBN denotes located
T16614 288-291 VBP denotes are
T16613 278-287 VBG denotes silencing
T16612 273-277 NN denotes gene
T16611 271-272 NN denotes ɛ
T16610 267-270 IN denotes for
T16609 258-266 VBN denotes required
T16608 248-257 NNS denotes sequences
T16607 244-247 DT denotes all
T16606 239-243 IN denotes that
T16605 233-238 VBN denotes shown
T16604 228-232 VBN denotes been
T16603 224-227 VBZ denotes has
T16602 221-223 PRP denotes it
T16601 213-220 IN denotes because
T16600 211-212 , denotes ,
T16599 207-211 VBN denotes used
T16598 203-206 VBD denotes was
T16597 201-202 -RRB- denotes )
T16596 198-201 NNP denotes ATG
T16595 197-198 -LRB- denotes (
T16594 191-196 NN denotes codon
T16593 180-190 NN denotes initiation
T16592 173-179 NN denotes globin
T16591 170-172 JJ denotes ɛy
T16590 166-169 DT denotes the
T16589 163-165 IN denotes of
T16588 154-162 RB denotes upstream
T16587 145-153 NN denotes fragment
T16586 138-144 JJ denotes 2.2-kb
T16585 136-137 DT denotes A
T16584 134-135 . denotes .
T16583 126-134 NN denotes promoter
T16582 117-125 JJ denotes proximal
T16581 114-116 JJ denotes ɛy
T16580 110-113 DT denotes the
T16579 107-109 IN denotes of
T16578 93-106 NN denotes amplification
T16577 89-92 NNP denotes PCR
T16576 86-88 IN denotes by
T16575 76-85 VBN denotes generated
T16574 72-75 VBD denotes was
T16573 70-71 -RRB- denotes )
T16572 65-70 JJ denotes E-luc
T16571 64-65 -LRB- denotes (
T16570 56-63 NN denotes plasmid
T16569 47-55 NN denotes reporter
T16568 38-46 NN denotes deletion
T16567 29-37 NN denotes promoter
T16566 26-28 JJ denotes ɛy
T16565 22-25 DT denotes The
T16564 20-21 . denotes .
T16563 8-20 NN denotes construction
T16562 0-7 JJ denotes Plasmid
T16883 1625-1628 CD denotes +20
T16882 1622-1624 TO denotes to
T16881 1618-1621 CD denotes +45
T16880 1617-1618 -LRB- denotes (
T16879 1615-1616 NN denotes ′
T16878 1589-1615 CD denotes CGGAAGCTTGGGAGGTTGCTGGTGA3
T16877 1588-1589 NN denotes ′
T16876 1587-1588 CD denotes 5
T16875 1585-1586 , denotes ,
T16874 1578-1585 NNP denotes MHB1477
T16657 523-530 JJS denotes longest
T16656 519-522 DT denotes the
T16655 516-518 IN denotes on
T16654 510-515 VBN denotes based
T16653 507-509 VBZ denotes is
T16652 502-506 NN denotes site
T16651 496-501 NN denotes start
T16650 480-495 JJ denotes transcriptional
T16649 476-479 DT denotes The
T16648 474-475 . denotes .
T16647 470-474 NN denotes site
T16646 464-469 VB denotes start
T16645 450-463 NN denotes transcription
T16644 446-449 DT denotes the
T16643 443-445 TO denotes to
T16642 434-442 JJ denotes relative
T16641 431-433 VBZ denotes is
T16640 421-430 NN denotes numbering
T16639 410-420 NNP denotes Nucleotide
T16638 408-409 . denotes .
T16637 407-408 NNP denotes ]
T16636 405-407 CD denotes 50
R11478 T16562 T16563 amod Plasmid,construction
R11479 T16563 T16563 ROOT construction,construction
R11480 T16564 T16563 punct .,construction
R11481 T16565 T16570 det The,plasmid
R11482 T16566 T16567 amod ɛy,promoter
R11483 T16567 T16570 compound promoter,plasmid
R11484 T16568 T16570 compound deletion,plasmid
R11485 T16569 T16570 compound reporter,plasmid
R11486 T16570 T16575 nsubjpass plasmid,generated
R11487 T16571 T16570 punct (,plasmid
R11488 T16572 T16570 appos E-luc,plasmid
R11489 T16573 T16570 punct ),plasmid
R11490 T16574 T16575 auxpass was,generated
R11491 T16575 T16575 ROOT generated,generated
R11492 T16576 T16575 agent by,generated
R11493 T16577 T16578 compound PCR,amplification
R11494 T16578 T16576 pobj amplification,by
R11495 T16579 T16578 prep of,amplification
R11496 T16580 T16583 det the,promoter
R11497 T16581 T16583 amod ɛy,promoter
R11498 T16582 T16583 amod proximal,promoter
R11499 T16583 T16579 pobj promoter,of
R11500 T16584 T16575 punct .,generated
R11501 T16585 T16587 det A,fragment
R11502 T16586 T16587 compound 2.2-kb,fragment
R11503 T16587 T16588 compound fragment,upstream
R11504 T16588 T16599 nsubjpass upstream,used
R11505 T16589 T16588 prep of,upstream
R11506 T16590 T16593 det the,initiation
R11507 T16591 T16593 amod ɛy,initiation
R11508 T16592 T16593 compound globin,initiation
R11509 T16593 T16594 compound initiation,codon
R11510 T16594 T16589 pobj codon,of
R11511 T16595 T16596 punct (,ATG
R11512 T16596 T16594 appos ATG,codon
R11513 T16597 T16594 punct ),codon
R11514 T16598 T16599 auxpass was,used
R11515 T16599 T16599 ROOT used,used
R11516 T16600 T16599 punct ",",used
R11517 T16601 T16605 mark because,shown
R11518 T16602 T16605 nsubjpass it,shown
R11519 T16603 T16605 aux has,shown
R11520 T16604 T16605 auxpass been,shown
R11521 T16605 T16599 advcl shown,used
R11522 T16606 T16615 mark that,located
R11523 T16607 T16608 det all,sequences
R11524 T16608 T16615 nsubjpass sequences,located
R11525 T16609 T16608 acl required,sequences
R11526 T16610 T16609 prep for,required
R11527 T16611 T16612 compound ɛ,gene
R11528 T16612 T16610 pobj gene,for
R11529 T16613 T16612 acl silencing,gene
R11530 T16614 T16615 auxpass are,located
R11531 T16615 T16605 ccomp located,shown
R11532 T16616 T16615 prep within,located
R11533 T16617 T16620 det a,fragment
R11534 T16618 T16620 compound 3.7-kb,fragment
R11535 T16619 T16620 compound EcoRI,fragment
R11536 T16620 T16616 pobj fragment,within
R11537 T16621 T16620 acl containing,fragment
R11538 T16622 T16624 quantmod about,kb
R11539 T16623 T16624 nummod 2,kb
R11540 T16624 T16621 dobj kb,containing
R11541 T16625 T16624 prep of,kb
R11542 T16626 T16625 pobj sequence,of
R11543 T16627 T16621 advmod upstream,containing
R11544 T16628 T16627 prep of,upstream
R11545 T16629 T16634 det the,site
R11546 T16630 T16634 nmod ɛ,site
R11547 T16631 T16634 compound globin,site
R11548 T16632 T16633 compound gene,cap
R11549 T16633 T16634 compound cap,site
R11550 T16634 T16628 pobj site,of
R11551 T16635 T16634 appos [,site
R11552 T16636 T16637 nummod 50,]
R11553 T16637 T16634 appos ],site
R11554 T16638 T16599 punct .,used
R11555 T16639 T16640 compound Nucleotide,numbering
R11556 T16640 T16641 nsubj numbering,is
R11557 T16641 T16641 ROOT is,is
R11558 T16642 T16641 acomp relative,is
R11559 T16643 T16642 prep to,relative
R11560 T16644 T16645 det the,transcription
R11561 T16645 T16646 nsubj transcription,start
R11562 T16646 T16641 conj start,is
R11563 T16647 T16646 dobj site,start
R11564 T16648 T16641 punct .,is
R11565 T16649 T16652 det The,site
R11566 T16650 T16652 amod transcriptional,site
R11567 T16651 T16652 compound start,site
R11568 T16652 T16654 nsubjpass site,based
R11569 T16653 T16654 auxpass is,based
R11570 T16654 T16654 ROOT based,based
R11571 T16655 T16654 prep on,based
R11572 T16656 T16658 det the,cDNA
R11573 T16657 T16658 amod longest,cDNA
R11574 T16658 T16655 pobj cDNA,on
R11575 T16659 T16658 prep in,cDNA
R11576 T16660 T16661 det the,Fantom
R11577 T16661 T16659 pobj Fantom,in
R11578 T16662 T16661 punct (,Fantom
R11579 T16663 T16664 compound Functional,Annotation
R11580 T16664 T16661 appos Annotation,Fantom
R11581 T16665 T16664 prep of,Annotation
R11582 T16666 T16665 pobj Mouse,of
R11583 T16667 T16661 punct ),Fantom
R11584 T16668 T16658 conj database,cDNA
R11585 T16669 T16654 punct .,based
R11586 T16670 T16672 det The,primers
R11587 T16671 T16672 compound PCR,primers
R11588 T16672 T16673 nsubj primers,contained
R11589 T16673 T16673 ROOT contained,contained
R11590 T16674 T16677 nmod XhoI,sites
R11591 T16675 T16674 cc and,XhoI
R11592 T16676 T16674 conj HindIII,XhoI
R11593 T16677 T16673 dobj sites,contained
R11594 T16678 T16680 nsubjpass that,used
R11595 T16679 T16680 auxpass were,used
R11596 T16680 T16677 relcl used,sites
R11597 T16681 T16682 aux to,clone
R11598 T16682 T16680 xcomp clone,used
R11599 T16683 T16686 det the,fragment
R11600 T16684 T16686 amod ɛy,fragment
R11601 T16685 T16686 compound promoter,fragment
R11602 T16686 T16682 dobj fragment,clone
R11603 T16687 T16682 advmod upstream,clone
R11604 T16688 T16687 prep of,upstream
R11605 T16689 T16692 det the,gene
R11606 T16690 T16692 amod firefly,gene
R11607 T16691 T16692 compound luciferase,gene
R11608 T16692 T16688 pobj gene,of
R11609 T16693 T16692 prep in,gene
R11610 T16694 T16695 compound pGL3,Basic
R11611 T16695 T16693 pobj Basic,in
R11612 T16696 T16699 punct (,Madison
R11613 T16697 T16699 nmod Promega,Madison
R11614 T16698 T16697 punct ",",Promega
R11615 T16699 T16692 appos Madison,gene
R11616 T16700 T16699 punct ",",Madison
R11617 T16701 T16699 npadvmod Wisconsin,Madison
R11618 T16702 T16701 punct ",",Wisconsin
R11619 T16703 T16704 compound United,States
R11620 T16704 T16701 appos States,Wisconsin
R11621 T16705 T16699 punct ),Madison
R11622 T16706 T16673 punct .,contained
R11623 T16707 T16710 det A,fragment
R11624 T16708 T16710 amod 2.5-kb,fragment
R11625 T16709 T16710 compound SstI/XhoI,fragment
R11626 T16710 T16724 nsubjpass fragment,inserted
R11627 T16711 T16710 prep of,fragment
R11628 T16712 T16713 quantmod μLCRβ,9.3
R11629 T16713 T16711 pobj 9.3,of
R11630 T16714 T16724 punct (,inserted
R11631 T16715 T16716 compound micro,LCR
R11632 T16716 T16724 nsubjpass LCR,inserted
R11633 T16717 T16720 punct ;,]
R11634 T16718 T16720 compound [,]
R11635 T16719 T16720 nummod 31,]
R11636 T16720 T16716 appos ],LCR
R11637 T16721 T16720 punct ),]
R11638 T16722 T16724 auxpass was,inserted
R11639 T16723 T16724 advmod then,inserted
R11640 T16724 T16724 ROOT inserted,inserted
R11641 T16725 T16724 advmod upstream,inserted
R11642 T16726 T16725 prep of,upstream
R11643 T16727 T16729 det the,promoter
R11644 T16728 T16729 amod ɛy,promoter
R11645 T16729 T16726 pobj promoter,of
R11646 T16730 T16729 prep in,promoter
R11647 T16731 T16735 det the,plasmid
R11648 T16732 T16735 amod above,plasmid
R11649 T16733 T16735 amod pGL3,plasmid
R11650 T16734 T16735 amod Basic,plasmid
R11651 T16735 T16730 pobj plasmid,in
R11652 T16736 T16724 punct ",",inserted
R11653 T16737 T16724 advcl resulting,inserted
R11654 T16738 T16737 prep in,resulting
R11655 T16739 T16740 det a,reporter
R11656 T16740 T16738 pobj reporter,in
R11657 T16741 T16724 punct construct,inserted
R11658 T16742 T16747 prep in,driven
R11659 T16743 T16742 pobj which,in
R11660 T16744 T16745 amod luciferase,expression
R11661 T16745 T16747 nsubjpass expression,driven
R11662 T16746 T16747 auxpass is,driven
R11663 T16747 T16724 advcl driven,inserted
R11664 T16748 T16747 agent by,driven
R11665 T16749 T16751 det the,promoter
R11666 T16750 T16751 amod ɛy,promoter
R11667 T16751 T16748 pobj promoter,by
R11668 T16752 T16724 punct .,inserted
R11669 T16753 T16754 det A,series
R11670 T16754 T16763 nsubjpass series,generated
R11671 T16755 T16754 prep of,series
R11672 T16756 T16757 compound deletion,constructs
R11673 T16757 T16755 pobj constructs,of
R11674 T16758 T16757 prep of,constructs
R11675 T16759 T16761 det the,promoter
R11676 T16760 T16761 amod ɛy,promoter
R11677 T16761 T16758 pobj promoter,of
R11678 T16762 T16763 auxpass were,generated
R11679 T16763 T16763 ROOT generated,generated
R11680 T16764 T16763 advmod similarly,generated
R11681 T16765 T16763 punct .,generated
R11682 T16766 T16767 amod Forward,primers
R11683 T16767 T16772 nsubj primers,include
R11684 T16768 T16767 prep with,primers
R11685 T16769 T16771 det an,site
R11686 T16770 T16771 compound XhoI,site
R11687 T16771 T16768 pobj site,with
R11688 T16772 T16772 ROOT include,include
R11689 T16773 T16772 punct :,include
R11690 T16774 T16772 dobj MHB1457,include
R11691 T16775 T16774 punct ",",MHB1457
R11692 T16776 T16779 nummod 5,′
R11693 T16777 T16778 quantmod ′,CCGCTCGAGTGCTAGGCAAACACTCA3
R11694 T16778 T16779 nummod CCGCTCGAGTGCTAGGCAAACACTCA3,′
R11695 T16779 T16774 appos ′,MHB1457
R11696 T16780 T16779 punct (,′
R11697 T16781 T16779 nmod −,′
R11698 T16782 T16781 pobj 2077,−
R11699 T16783 T16779 prep to,′
R11700 T16784 T16783 pobj −,to
R11701 T16785 T16784 appos 2052,−
R11702 T16786 T16784 punct ),−
R11703 T16787 T16783 punct ;,to
R11704 T16788 T16783 pobj MHB1503,to
R11705 T16789 T16788 punct ",",MHB1503
R11706 T16790 T16791 nummod 5,′
R11707 T16791 T16788 appos ′,MHB1503
R11708 T16792 T16793 nummod CCGCTCGAGTCTCTACACTGTCACTCCCTG3,′
R11709 T16793 T16791 appos ′,′
R11710 T16794 T16795 punct (,−
R11711 T16795 T16793 appos −,′
R11712 T16796 T16795 nummod 634,−
R11713 T16797 T16796 prep to,634
R11714 T16798 T16797 pobj −,to
R11715 T16799 T16798 appos 605,−
R11716 T16800 T16798 punct ),−
R11717 T16801 T16802 punct ;,MHB1505
R11718 T16802 T16793 appos MHB1505,′
R11719 T16803 T16802 punct ",",MHB1505
R11720 T16804 T16805 nummod 5,′
R11721 T16805 T16807 dep ′,′
R11722 T16806 T16807 nummod CCGCTCGAGGGAGCCAAAAAAAGAATGC3,′
R11723 T16807 T16802 appos ′,MHB1505
R11724 T16808 T16809 punct (,−
R11725 T16809 T16816 nmod −,MHB1506
R11726 T16810 T16809 nummod 197,−
R11727 T16811 T16815 quantmod to,;
R11728 T16812 T16811 pobj −,to
R11729 T16813 T16812 appos 169,−
R11730 T16814 T16812 punct ),−
R11731 T16815 T16816 punct ;,MHB1506
R11732 T16816 T16830 nmod MHB1506,MHB1532
R11733 T16817 T16816 punct ",",MHB1506
R11734 T16818 T16819 nummod 5,′
R11735 T16819 T16830 nmod ′,MHB1532
R11736 T16820 T16821 nummod CCGCTCGAGCTGACCAATGGCTTCAAAG3,′
R11737 T16821 T16819 appos ′,′
R11738 T16822 T16823 punct (,−
R11739 T16823 T16821 appos −,′
R11740 T16824 T16823 nummod 85,−
R11741 T16825 T16824 prep to,85
R11742 T16826 T16825 pobj −,to
R11743 T16827 T16826 appos 58,−
R11744 T16828 T16826 punct ),−
R11745 T16829 T16830 punct ;,MHB1532
R11746 T16830 T16807 appos MHB1532,′
R11747 T16831 T16830 punct ",",MHB1532
R11748 T16832 T16833 nummod 5,′
R11749 T16833 T16835 dep ′,′
R11750 T16834 T16835 nummod CCGCTCGAGAATGCAGAACAAAGGGTCAGA3,′
R11751 T16835 T16830 appos ′,MHB1532
R11752 T16836 T16837 punct (,−
R11753 T16837 T16835 appos −,′
R11754 T16838 T16837 nummod 63,−
R11755 T16839 T16838 prep to,63
R11756 T16840 T16839 pobj −,to
R11757 T16841 T16840 appos 34,−
R11758 T16842 T16840 punct ),−
R11759 T16843 T16837 punct ;,−
R11760 T16844 T16837 cc and,−
R11761 T16845 T16835 appos MHB1507,′
R11762 T16846 T16845 punct ",",MHB1507
R11763 T16847 T16848 nummod 5,′
R11764 T16848 T16849 compound ′,CCGCTCGAGGTCTGCGAAGAATAAAAGGC
R11765 T16849 T16851 quantmod CCGCTCGAGGTCTGCGAAGAATAAAAGGC,′
R11766 T16850 T16851 nummod 3,′
R11767 T16851 T16835 appos ′,′
R11768 T16852 T16853 punct (,−
R11769 T16853 T16851 appos −,′
R11770 T16854 T16853 dobj 37,−
R11771 T16855 T16853 prep to,−
R11772 T16856 T16855 pobj −,to
R11773 T16857 T16856 appos 9,−
R11774 T16858 T16856 punct ),−
R11775 T16859 T16772 punct .,include
R11776 T16860 T16862 det All,primers
R11777 T16861 T16862 amod forward,primers
R11778 T16862 T16864 nsubjpass primers,used
R11779 T16863 T16864 auxpass were,used
R11780 T16864 T16864 ROOT used,used
R11781 T16865 T16864 prep in,used
R11782 T16866 T16865 pobj combination,in
R11783 T16867 T16864 prep with,used
R11784 T16868 T16872 det the,site
R11785 T16869 T16870 compound reverse,primer
R11786 T16870 T16872 compound primer,site
R11787 T16871 T16872 compound HindIII,site
R11788 T16872 T16867 pobj site,with
R11789 T16873 T16872 punct :,site
R11790 T16874 T16872 appos MHB1477,site
R11791 T16875 T16874 punct ",",MHB1477
R11792 T16876 T16877 nummod 5,′
R11793 T16877 T16874 appos ′,MHB1477
R11794 T16878 T16879 nummod CGGAAGCTTGGGAGGTTGCTGGTGA3,′
R11795 T16879 T16877 appos ′,′
R11796 T16880 T16881 punct (,+45
R11797 T16881 T16879 appos +45,′
R11798 T16882 T16881 prep to,+45
R11799 T16883 T16882 pobj +20,to
R11800 T16884 T16881 punct ),+45
R11801 T16885 T16864 punct .,used
R11802 T16886 T16890 amod Sox6-pcDNA3,]
R11803 T16887 T16890 nummod .1,]
R11804 T16888 T16890 nmod [,]
R11805 T16889 T16890 nummod 15,]
R11806 T16890 T16892 nsubjpass ],used
R11807 T16891 T16892 auxpass was,used
R11808 T16892 T16892 ROOT used,used
R11809 T16893 T16894 aux to,overexpress
R11810 T16894 T16892 xcomp overexpress,used
R11811 T16895 T16894 dobj Sox6,overexpress
R11812 T16896 T16892 punct .,used
R11813 T16897 T16899 det A,version
R11877 T16961 T16960 nummod 63,−
R11878 T16962 T16961 prep to,63
R11879 T16963 T16962 pobj −,to
R11880 T16964 T16963 appos 19,−
R11881 T16965 T16963 punct ),−
R11882 T16966 T16967 punct ;,MHB1662
R11883 T16967 T16951 dobj MHB1662,include
R11884 T16968 T16967 punct ",",MHB1662
R11885 T16969 T16970 nummod 5,′
R11886 T16970 T16986 nmod ′,CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
R11887 T16971 T16972 nummod CCGCTCGAGAATGCAGAACAAAGGGTCAGATGAGTGTCTGCGAAGAA3,′
R11888 T16972 T16970 appos ′,′
R11889 T16973 T16974 punct (,−
R11890 T16974 T16972 appos −,′
R11891 T16975 T16974 nummod 63,−
R11892 T16976 T16975 prep to,63
R11893 T16977 T16976 pobj −,to
R11894 T16978 T16977 appos 16,−
R11895 T16979 T16977 punct ),−
R11896 T16980 T16970 punct ;,′
R11897 T16981 T16970 cc and,′
R11898 T16982 T16970 conj MHB1663,′
R11899 T16983 T16982 punct ",",MHB1663
R11900 T16984 T16985 nummod 5,′
R11901 T16985 T16986 compound ′,CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
R11902 T16986 T16967 conj CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA,MHB1662
R11903 T16987 T16988 nummod 3,′
R11904 T16988 T16986 appos ′,CCGCTCGAGAATGCATGCCAAGGGTCAGATGAGTGTCTGCGAAGAA
R11905 T16989 T16990 punct (,−
R11906 T16990 T16988 appos −,′
R11907 T16991 T16990 nummod 63,−
R11908 T16992 T16990 prep to,−
R11909 T16993 T16992 pobj −,to
R11910 T16994 T16993 appos 18,−
R11911 T16995 T16993 punct ),−
R11912 T16996 T16951 punct .,include
R11814 T16898 T16899 amod truncated,version
R11815 T16899 T16904 nsubj version,construct
R11816 T16900 T16899 prep of,version
R11817 T16901 T16903 det the,overexpression
R11818 T16902 T16903 amod Sox6,overexpression
R11819 T16903 T16900 pobj overexpression,of
R11820 T16904 T16904 ROOT construct,construct
R11821 T16905 T16908 punct (,)
R11822 T16906 T16908 nmod Sox6-ΔHMG-pcDNA3,)
R11823 T16907 T16906 nummod .1,Sox6-ΔHMG-pcDNA3
R11824 T16908 T16904 punct ),construct
R11825 T16909 T16910 nsubj that,lacks
R11826 T16910 T16904 ccomp lacks,construct
R11827 T16911 T16913 det the,domain
R11828 T16912 T16913 compound HMG,domain
R11829 T16913 T16915 nsubjpass domain,generated
R11830 T16914 T16915 auxpass was,generated
R11831 T16915 T16910 ccomp generated,lacks
R11832 T16916 T16915 punct ",",generated
R11833 T16917 T16918 mark as,described
R11834 T16918 T16915 advcl described,generated
R11835 T16919 T16918 agent by,described
R11836 T16920 T16919 pobj others,by
R11837 T16921 T16923 nmod [,]
R11838 T16922 T16923 nummod 32,]
R11839 T16923 T16920 appos ],others
R11840 T16924 T16904 punct .,construct
R11841 T16925 T16936 nsubjpass Mutagenesis,done
R11842 T16926 T16925 prep of,Mutagenesis
R11843 T16927 T16928 compound Sox/Sox6,consensus
R11844 T16928 T16930 nmod consensus,sites
R11845 T16929 T16930 amod binding,sites
R11846 T16930 T16926 pobj sites,of
R11847 T16931 T16930 prep of,sites
R11848 T16932 T16934 det the,promoter
R11849 T16933 T16934 amod ɛy,promoter
R11850 T16934 T16931 pobj promoter,of
R11851 T16935 T16936 auxpass were,done
R11852 T16936 T16936 ROOT done,done
R11853 T16937 T16936 agent by,done
R11854 T16938 T16937 pobj PCR,by
R11855 T16939 T16936 punct .,done
R11856 T16940 T16941 amod Forward,primers
R11857 T16941 T16951 nsubj primers,include
R11858 T16942 T16941 acl used,primers
R11859 T16943 T16944 aux to,generate
R11860 T16944 T16942 xcomp generate,used
R11861 T16945 T16950 det these,constructs
R11862 T16946 T16950 amod mutagenized,constructs
R11863 T16947 T16950 compound ɛy,constructs
R11864 T16948 T16949 compound promoter,reporter
R11865 T16949 T16950 compound reporter,constructs
R11866 T16950 T16951 nsubj constructs,include
R11867 T16951 T16951 ROOT include,include
R11868 T16952 T16951 punct :,include
R11869 T16953 T16967 nummod MHB1661,MHB1662
R11870 T16954 T16956 punct ",",′
R11871 T16955 T16956 nummod 5,′
R11872 T16956 T16967 nmod ′,MHB1662
R11873 T16957 T16958 nummod CCGCTCGAGAATGCAGTGCCAAGGGTCAGAACATTGTCTGCGAAG3,′
R11874 T16958 T16956 appos ′,′
R11875 T16959 T16960 punct (,−
R11876 T16960 T16958 appos −,′

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T16499 800-804 Protein denotes SstI
T16498 609-618 Gene_expression denotes contained
T16497 609-618 Gene_expression denotes contained
T16496 734-738 Protein denotes pGL3
T16495 707-730 Protein denotes firefly luciferase gene
T16494 628-641 Protein denotes HindIII sites
T16493 619-623 Protein denotes XhoI
T16492 381-394 Protein denotes ɛ globin gene
T16491 316-321 Protein denotes EcoRI
T16490 170-179 Protein denotes ɛy globin
T16489 114-134 Protein denotes ɛy proximal promoter
T16520 1952-1995 Protein denotes mutagenized ɛy promoter reporter constructs
T16519 1847-1851 Protein denotes Sox6
T16518 1843-1846 Protein denotes Sox
T16517 1763-1768 Negative_regulation denotes lacks
T16516 1773-1783 Protein denotes HMG domain
T16515 1738-1742 Protein denotes Sox6
T16514 1707-1711 Protein denotes Sox6
T16513 1662-1673 Positive_regulation denotes overexpress
T16512 1662-1673 Positive_regulation denotes overexpress
T16511 1662-1673 Gene_expression denotes overexpress
T16510 1662-1673 Gene_expression denotes overexpress
T16509 1674-1678 Protein denotes Sox6
T16508 1631-1635 Protein denotes Sox6
T16507 1578-1585 Protein denotes MHB1477
T16506 1564-1576 Protein denotes HindIII site
T16505 1438-1445 Protein denotes MHB1507
T16504 1125-1134 Protein denotes XhoI site
T16503 983-993 Gene_expression denotes expression
T16502 972-982 Protein denotes luciferase
T16501 822-831 Protein denotes μLCRβ 9.3
T16500 805-809 Protein denotes XhoI
R11461 T16493 T16497 themeOf XhoI,contained
R11462 T16494 T16498 themeOf HindIII sites,contained
R11463 T16502 T16503 themeOf luciferase,expression
R11464 T16508 T16510 themeOf Sox6,overexpress
R11465 T16509 T16511 themeOf Sox6,overexpress
R11466 T16510 T16512 themeOf overexpress,overexpress
R11467 T16511 T16513 themeOf overexpress,overexpress
R11468 T16516 T16517 themeOf HMG domain,lacks

testone

Id Subject Object Predicate Lexical cue
T15960 997-1003 Positive_regulation denotes driven
T15959 983-993 Gene_expression denotes expression
T15958 278-287 Negative_regulation denotes silencing
T15957 1883-1885 Protein denotes ɛy
T15956 1738-1742 Protein denotes Sox6
T15955 1707-1711 Protein denotes Sox6
T15954 1674-1678 Protein denotes Sox6
T15953 1631-1635 Protein denotes Sox6
T15952 1063-1065 Protein denotes ɛy
T15951 1011-1013 Protein denotes ɛy
T15950 972-982 Protein denotes luciferase
T15949 884-886 Protein denotes ɛy
T15948 715-725 Protein denotes luciferase
T15947 670-672 Protein denotes ɛy
T15946 381-389 Protein denotes ɛ globin
T15945 271-272 Protein denotes ɛ
T15944 170-179 Protein denotes ɛy globin
T15943 114-116 Protein denotes ɛy
T15942 26-28 Protein denotes ɛy
R11066 T15945 T15958 themeOf ɛ,silencing
R11067 T15950 T15959 themeOf luciferase,expression
R11068 T15959 T15960 themeOf expression,driven

test3

Id Subject Object Predicate Lexical cue
T15994 1883-1885 Protein denotes ɛy
T15993 1738-1742 Protein denotes Sox6
T15992 1707-1711 Protein denotes Sox6
T15991 1674-1678 Protein denotes Sox6
T15990 1631-1635 Protein denotes Sox6
T15989 1063-1065 Protein denotes ɛy
T15988 1011-1013 Protein denotes ɛy
T15987 997-1003 Positive_regulation denotes driven
T15986 983-993 Gene_expression denotes expression
T15985 972-982 Protein denotes luciferase
T15984 884-886 Protein denotes ɛy
T15983 715-725 Protein denotes luciferase
T15982 670-672 Protein denotes ɛy
T15981 381-389 Protein denotes ɛ globin
T15980 271-272 Protein denotes ɛ
T15979 170-179 Protein denotes ɛy globin
T15978 114-116 Protein denotes ɛy
T15977 26-28 Protein denotes ɛy
T15976 1883-1885 Protein denotes ɛy
T15975 1738-1742 Protein denotes Sox6
T15974 1707-1711 Protein denotes Sox6
T15973 1674-1678 Protein denotes Sox6
T15972 1631-1635 Protein denotes Sox6
T15971 1063-1065 Protein denotes ɛy
T15970 1011-1013 Protein denotes ɛy
T15969 972-982 Protein denotes luciferase
T15968 884-886 Protein denotes ɛy
T15967 715-725 Protein denotes luciferase
T15966 670-672 Protein denotes ɛy
T15965 381-389 Protein denotes ɛ globin
T15964 271-272 Protein denotes ɛ
T15963 170-179 Protein denotes ɛy globin
T15962 114-116 Protein denotes ɛy
T15961 26-28 Protein denotes ɛy
R11069 T15985 T15986 themeOf luciferase,expression
R11070 T15986 T15987 themeOf expression,driven