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PMC:1359074 / 26735-26860 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12062 123-124 -RRB- denotes )
T12061 121-123 NN denotes 3F
T12060 117-120 CC denotes and
T12059 114-116 NN denotes 3E
T12058 107-113 NN denotes Figure
T12057 106-107 -LRB- denotes (
T12056 97-105 NN denotes activity
T12055 93-96 PRP-DOLLAR- denotes its
T12054 90-92 IN denotes of
T12053 79-89 NN denotes repression
T12052 75-78 CC denotes and
T12051 66-74 NN denotes promoter
T12050 63-65 JJ denotes ɛy
T12049 59-62 DT denotes the
T12048 56-58 TO denotes to
T12047 48-55 NN denotes binding
T12046 43-47 NN denotes Sox6
T12045 39-42 IN denotes for
T12044 29-38 JJ denotes essential
T12043 25-28 VB denotes are
T12042 19-24 NN denotes sites
T12041 14-18 DT denotes both
T12040 12-13 -COMMA- denotes ,
T12039 0-12 RB denotes Functionally
R7908 T12042 T12041 arg1Of sites,both
R7909 T12042 T12043 arg1Of sites,are
R7910 T12042 T12044 arg1Of sites,essential
R7911 T12043 T12039 arg1Of are,Functionally
R7912 T12043 T12040 arg1Of are,","
R7913 T12044 T12043 arg2Of essential,are
R7914 T12044 T12045 arg1Of essential,for
R7915 T12047 T12045 arg2Of binding,for
R7916 T12047 T12046 arg1Of binding,Sox6
R7917 T12047 T12048 arg1Of binding,to
R7918 T12051 T12052 arg1Of promoter,and
R7919 T12052 T12048 arg2Of and,to
R7920 T12052 T12049 arg1Of and,the
R7921 T12052 T12050 arg1Of and,ɛy
R7922 T12052 T12054 arg1Of and,of
R7923 T12052 T12057 arg1Of and,(
R7924 T12053 T12052 arg2Of repression,and
R7925 T12056 T12054 arg2Of activity,of
R7926 T12056 T12055 arg1Of activity,its
R7927 T12059 T12058 arg1Of 3E,Figure
R7928 T12059 T12060 arg1Of 3E,and
R7929 T12060 T12057 arg2Of and,(
R7930 T12061 T12060 arg2Of 3F,and
R7931 T12062 T12057 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11481 63-65 Protein denotes ɛy
T11480 43-47 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13258 43-47 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-MF

Id Subject Object Predicate Lexical cue
T11582 48-55 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T11158 0-125 Sentence denotes Functionally, both sites are essential for Sox6 binding to the ɛy promoter and repression of its activity (Figure 3E and 3F).
T207 0-125 Sentence denotes Functionally, both sites are essential for Sox6 binding to the ɛy promoter and repression of its activity (Figure 3E and 3F).

simple1

Id Subject Object Predicate Lexical cue
T11745 63-65 Protein denotes ɛy
T11744 43-47 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15798 48-55 Binding denotes binding
T15797 79-89 Negative_regulation denotes repression
T15796 29-38 Positive_regulation denotes essential
T15716 63-65 Protein denotes ɛy
T15715 43-47 Protein denotes Sox6
R11008 T15715 T15798 themeOf Sox6,binding
R11049 T15798 T15797 themeOf binding,repression
R11050 T15798 T15796 themeOf binding,essential

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13385 29-38 Positive_regulation denotes essential
T13384 48-55 Binding denotes binding
T13306 63-65 Protein denotes ɛy
T13305 43-47 Protein denotes Sox6
R9178 T13305 T13384 themeOf Sox6,binding
R9181 T13306 T13384 themeOf ɛy,binding
R9218 T13384 T13385 themeOf binding,essential

DLUT931

Id Subject Object Predicate Lexical cue
T13636 29-38 Positive_regulation denotes essential
T13635 79-89 Negative_regulation denotes repression
T13634 48-55 Binding denotes binding
T13552 63-65 Protein denotes ɛy
T13551 43-47 Protein denotes Sox6
R9278 T13551 T13634 themeOf Sox6,binding
R9281 T13552 T13634 themeOf ɛy,binding
R9318 T13634 T13635 themeOf binding,repression
R9319 T13634 T13636 themeOf binding,essential
R9321 T13635 T13636 themeOf repression,essential

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15590 63-65 Protein denotes ɛy
T15506 14-24 Entity denotes both sites
T15447 43-47 Protein denotes Sox6
T15632 59-74 Entity denotes the ɛy promoter
R10994 T15632 T15590 partOf the ɛy promoter,ɛy

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14059 124-125 . denotes .
T14058 123-124 -RRB- denotes )
T14057 121-123 CD denotes 3F
T14056 117-120 CC denotes and
T14055 114-116 CD denotes 3E
T14054 107-113 NN denotes Figure
T14053 106-107 -LRB- denotes (
T14052 97-105 NN denotes activity
T14051 93-96 PRP$ denotes its
T14050 90-92 IN denotes of
T14049 79-89 NN denotes repression
T14048 75-78 CC denotes and
T14047 66-74 NN denotes promoter
T14046 63-65 JJ denotes ɛy
T14045 59-62 DT denotes the
T14044 56-58 TO denotes to
T14043 48-55 JJ denotes binding
T14042 43-47 JJ denotes Sox6
T14041 39-42 IN denotes for
T14040 29-38 JJ denotes essential
T14039 25-28 VBP denotes are
T14038 19-24 NNS denotes sites
T14037 14-18 DT denotes both
T14036 12-13 , denotes ,
T14035 0-12 RB denotes Functionally
R9758 T14035 T14039 advmod Functionally,are
R9764 T14036 T14039 punct ",",are
R9769 T14037 T14038 det both,sites
R9772 T14038 T14039 nsubj sites,are
R9776 T14039 T14039 ROOT are,are
R9780 T14040 T14039 acomp essential,are
R9784 T14041 T14040 prep for,essential
R9788 T14042 T14043 amod Sox6,binding
R9792 T14043 T14041 amod binding,for
R9793 T14044 T14043 prep to,binding
R9794 T14045 T14047 det the,promoter
R9796 T14046 T14047 amod ɛy,promoter
R9800 T14047 T14044 pobj promoter,to
R9804 T14048 T14047 cc and,promoter
R9808 T14049 T14047 conj repression,promoter
R9810 T14050 T14047 prep of,promoter
R9815 T14051 T14052 poss its,activity
R9818 T14052 T14050 pobj activity,of
R9822 T14053 T14054 punct (,Figure
R9826 T14054 T14047 appos Figure,promoter
R9830 T14055 T14054 nummod 3E,Figure
R9834 T14056 T14054 cc and,Figure
R9838 T14057 T14054 conj 3F,Figure
R9842 T14058 T14039 punct ),are
R9846 T14059 T14039 punct .,are

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13422 29-38 Positive_regulation denotes essential
T13421 79-89 Negative_regulation denotes repression
T13285 48-55 Binding denotes binding
T13247 43-47 Protein denotes Sox6
T13248 66-74 Entity denotes promoter
R9118 T13247 T13285 themeOf Sox6,binding
R9124 T13248 T13285 Site promoter,binding
R9147 T13285 T13421 themeOf binding,repression
R9148 T13285 T13422 themeOf binding,essential

testone

Id Subject Object Predicate Lexical cue
T10798 63-65 Protein denotes ɛy
T10797 43-47 Protein denotes Sox6
T10886 48-55 Binding denotes binding
R7442 T10797 T10886 themeOf Sox6,binding

test3

Id Subject Object Predicate Lexical cue
T11047 63-65 Protein denotes ɛy
T11046 48-55 Binding denotes binding
T11045 43-47 Protein denotes Sox6
T10943 63-65 Protein denotes ɛy
T10942 43-47 Protein denotes Sox6
R7502 T11045 T11046 themeOf Sox6,binding