PMC:1359074 / 26138-26308 JSONTXT

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    2_test

    {"project":"2_test","denotations":[{"id":"16462943-9755172-85761001","span":{"begin":167,"end":168},"obj":"9755172"},{"id":"T8724","span":{"begin":167,"end":168},"obj":"9755172"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T11958","span":{"begin":168,"end":169},"obj":"-RRB-"},{"id":"T11957","span":{"begin":167,"end":168},"obj":"CD"},{"id":"T11956","span":{"begin":166,"end":167},"obj":"-LRB-"},{"id":"T11955","span":{"begin":160,"end":165},"obj":"NN"},{"id":"T11954","span":{"begin":156,"end":159},"obj":"NN"},{"id":"T11953","span":{"begin":147,"end":155},"obj":"JJ"},{"id":"T11952","span":{"begin":138,"end":146},"obj":"VB"},{"id":"T11951","span":{"begin":133,"end":137},"obj":"WDT"},{"id":"T11950","span":{"begin":129,"end":132},"obj":"NN"},{"id":"T11949","span":{"begin":126,"end":128},"obj":"TO"},{"id":"T11948","span":{"begin":117,"end":125},"obj":"NN"},{"id":"T11947","span":{"begin":113,"end":116},"obj":"NN"},{"id":"T11946","span":{"begin":109,"end":112},"obj":"CD"},{"id":"T11945","span":{"begin":105,"end":108},"obj":"DT"},{"id":"T11944","span":{"begin":102,"end":104},"obj":"IN"},{"id":"T11943","span":{"begin":91,"end":101},"obj":"NN"},{"id":"T11942","span":{"begin":83,"end":90},"obj":"VB"},{"id":"T11941","span":{"begin":79,"end":82},"obj":"DT"},{"id":"T11940","span":{"begin":70,"end":78},"obj":"VB"},{"id":"T11939","span":{"begin":62,"end":69},"obj":"RB"},{"id":"T11938","span":{"begin":59,"end":61},"obj":"TO"},{"id":"T11937","span":{"begin":53,"end":58},"obj":"VB"},{"id":"T11936","span":{"begin":48,"end":52},"obj":"VB"},{"id":"T11935","span":{"begin":44,"end":47},"obj":"VB"},{"id":"T11934","span":{"begin":39,"end":43},"obj":"NN"},{"id":"T11933","span":{"begin":35,"end":38},"obj":"CC"},{"id":"T11932","span":{"begin":30,"end":34},"obj":"NN"},{"id":"T11931","span":{"begin":27,"end":29},"obj":"IN"},{"id":"T11930","span":{"begin":14,"end":26},"obj":"NN"},{"id":"T11929","span":{"begin":12,"end":13},"obj":"-COMMA-"},{"id":"T11928","span":{"begin":0,"end":12},"obj":"RB"}],"relations":[{"id":"R7798","pred":"arg1Of","subj":"T11930","obj":"T11931"},{"id":"R7799","pred":"arg1Of","subj":"T11930","obj":"T11935"},{"id":"R7800","pred":"arg1Of","subj":"T11930","obj":"T11936"},{"id":"R7801","pred":"arg2Of","subj":"T11930","obj":"T11937"},{"id":"R7802","pred":"arg1Of","subj":"T11930","obj":"T11940"},{"id":"R7803","pred":"arg1Of","subj":"T11932","obj":"T11933"},{"id":"R7804","pred":"arg2Of","subj":"T11933","obj":"T11931"},{"id":"R7805","pred":"arg2Of","subj":"T11934","obj":"T11933"},{"id":"R7806","pred":"arg1Of","subj":"T11937","obj":"T11928"},{"id":"R7807","pred":"arg1Of","subj":"T11937","obj":"T11929"},{"id":"R7808","pred":"arg2Of","subj":"T11937","obj":"T11935"},{"id":"R7809","pred":"arg2Of","subj":"T11937","obj":"T11936"},{"id":"R7810","pred":"arg3Of","subj":"T11940","obj":"T11937"},{"id":"R7811","pred":"arg1Of","subj":"T11940","obj":"T11938"},{"id":"R7812","pred":"arg1Of","subj":"T11940","obj":"T11939"},{"id":"R7813","pred":"arg2Of","subj":"T11943","obj":"T11940"},{"id":"R7814","pred":"arg1Of","subj":"T11943","obj":"T11941"},{"id":"R7815","pred":"arg1Of","subj":"T11943","obj":"T11942"},{"id":"R7816","pred":"arg1Of","subj":"T11943","obj":"T11944"},{"id":"R7817","pred":"arg1Of","subj":"T11943","obj":"T11949"},{"id":"R7818","pred":"arg1Of","subj":"T11943","obj":"T11951"},{"id":"R7819","pred":"arg1Of","subj":"T11943","obj":"T11952"},{"id":"R7820","pred":"arg2Of","subj":"T11948","obj":"T11944"},{"id":"R7821","pred":"arg1Of","subj":"T11948","obj":"T11945"},{"id":"R7822","pred":"arg1Of","subj":"T11948","obj":"T11946"},{"id":"R7823","pred":"arg1Of","subj":"T11948","obj":"T11947"},{"id":"R7824","pred":"arg2Of","subj":"T11950","obj":"T11949"},{"id":"R7825","pred":"arg2Of","subj":"T11955","obj":"T11952"},{"id":"R7826","pred":"arg1Of","subj":"T11955","obj":"T11953"},{"id":"R7827","pred":"arg1Of","subj":"T11955","obj":"T11954"},{"id":"R7828","pred":"arg1Of","subj":"T11955","obj":"T11956"},{"id":"R7829","pred":"arg2Of","subj":"T11957","obj":"T11956"},{"id":"R7830","pred":"arg3Of","subj":"T11958","obj":"T11956"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    bionlp-st-ge-2016-coref

    {"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T11448","span":{"begin":39,"end":43},"obj":"Antecedent"},{"id":"T11447","span":{"begin":30,"end":34},"obj":"Antecedent"},{"id":"T11446","span":{"begin":105,"end":125},"obj":"Anaphor"}],"relations":[{"id":"R7669","pred":"boundBy","subj":"T11446","obj":"T11447"},{"id":"R7670","pred":"boundBy","subj":"T11446","obj":"T11448"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    bionlp-st-ge-2016-test-proteins

    {"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T11475","span":{"begin":39,"end":43},"obj":"Protein"},{"id":"T11474","span":{"begin":30,"end":34},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T13253","span":{"begin":39,"end":43},"obj":"http://www.uniprot.org/uniprot/P35712"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T11579","span":{"begin":83,"end":90},"obj":"http://purl.obolibrary.org/obo/GO_0005488"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    sentences

    {"project":"sentences","denotations":[{"id":"T11154","span":{"begin":0,"end":170},"obj":"Sentence"},{"id":"T203","span":{"begin":0,"end":170},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    simple1

    {"project":"simple1","denotations":[{"id":"T11739","span":{"begin":39,"end":43},"obj":"Protein"},{"id":"T11738","span":{"begin":30,"end":34},"obj":"Protein"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    BioNLP16_DUT

    {"project":"BioNLP16_DUT","denotations":[{"id":"T15794","span":{"begin":14,"end":26},"obj":"Binding"},{"id":"T15710","span":{"begin":39,"end":43},"obj":"Protein"},{"id":"T15709","span":{"begin":30,"end":34},"obj":"Protein"}],"relations":[{"id":"R11005","pred":"themeOf","subj":"T15709","obj":"T15794"},{"id":"R11006","pred":"themeOf","subj":"T15710","obj":"T15794"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    BioNLP16_Messiy

    {"project":"BioNLP16_Messiy","denotations":[{"id":"T13382","span":{"begin":14,"end":26},"obj":"Binding"},{"id":"T13300","span":{"begin":39,"end":43},"obj":"Protein"},{"id":"T13299","span":{"begin":30,"end":34},"obj":"Protein"}],"relations":[{"id":"R9171","pred":"themeOf","subj":"T13300","obj":"T13382"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    DLUT931

    {"project":"DLUT931","denotations":[{"id":"T13632","span":{"begin":70,"end":78},"obj":"Positive_regulation"},{"id":"T13631","span":{"begin":14,"end":26},"obj":"Binding"},{"id":"T13546","span":{"begin":39,"end":43},"obj":"Protein"},{"id":"T13545","span":{"begin":30,"end":34},"obj":"Protein"}],"relations":[{"id":"R9271","pred":"themeOf","subj":"T13545","obj":"T13631"},{"id":"R9273","pred":"themeOf","subj":"T13546","obj":"T13631"},{"id":"R9316","pred":"themeOf","subj":"T13631","obj":"T13632"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    bionlp-st-ge-2016-test-ihmc

    {"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T15573","span":{"begin":126,"end":169},"obj":"Entity"},{"id":"T15536","span":{"begin":14,"end":43},"obj":"Entity"},{"id":"T15520","span":{"begin":113,"end":116},"obj":"Protein"},{"id":"T15503","span":{"begin":102,"end":125},"obj":"Protein"},{"id":"T15471","span":{"begin":39,"end":43},"obj":"Protein"},{"id":"T15441","span":{"begin":147,"end":169},"obj":"Entity"},{"id":"T15611","span":{"begin":30,"end":34},"obj":"Protein"},{"id":"T15602","span":{"begin":156,"end":159},"obj":"Protein"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T13951","span":{"begin":169,"end":170},"obj":"."},{"id":"T13950","span":{"begin":168,"end":169},"obj":"NNP"},{"id":"T13949","span":{"begin":167,"end":168},"obj":"CD"},{"id":"T13948","span":{"begin":166,"end":167},"obj":"NNP"},{"id":"T13947","span":{"begin":160,"end":165},"obj":"NNS"},{"id":"T13946","span":{"begin":156,"end":159},"obj":"NNP"},{"id":"T13945","span":{"begin":147,"end":155},"obj":"JJ"},{"id":"T13944","span":{"begin":138,"end":146},"obj":"VBZ"},{"id":"T13943","span":{"begin":133,"end":137},"obj":"IN"},{"id":"T13942","span":{"begin":129,"end":132},"obj":"NNP"},{"id":"T13941","span":{"begin":126,"end":128},"obj":"TO"},{"id":"T13940","span":{"begin":117,"end":125},"obj":"NNS"},{"id":"T13939","span":{"begin":113,"end":116},"obj":"NNP"},{"id":"T13938","span":{"begin":109,"end":112},"obj":"CD"},{"id":"T13937","span":{"begin":105,"end":108},"obj":"DT"},{"id":"T13936","span":{"begin":102,"end":104},"obj":"IN"},{"id":"T13935","span":{"begin":91,"end":101},"obj":"NN"},{"id":"T13934","span":{"begin":83,"end":90},"obj":"JJ"},{"id":"T13933","span":{"begin":79,"end":82},"obj":"DT"},{"id":"T13932","span":{"begin":70,"end":78},"obj":"VB"},{"id":"T13931","span":{"begin":62,"end":69},"obj":"RB"},{"id":"T13930","span":{"begin":59,"end":61},"obj":"TO"},{"id":"T13929","span":{"begin":53,"end":58},"obj":"VBN"},{"id":"T13928","span":{"begin":48,"end":52},"obj":"VBN"},{"id":"T13927","span":{"begin":44,"end":47},"obj":"VBZ"},{"id":"T13926","span":{"begin":39,"end":43},"obj":"NNP"},{"id":"T13925","span":{"begin":35,"end":38},"obj":"CC"},{"id":"T13924","span":{"begin":30,"end":34},"obj":"NNS"},{"id":"T13923","span":{"begin":27,"end":29},"obj":"IN"},{"id":"T13922","span":{"begin":14,"end":26},"obj":"NN"},{"id":"T13921","span":{"begin":12,"end":13},"obj":","},{"id":"T13920","span":{"begin":0,"end":12},"obj":"RB"}],"relations":[{"id":"R9517","pred":"advmod","subj":"T13920","obj":"T13929"},{"id":"R9518","pred":"punct","subj":"T13921","obj":"T13929"},{"id":"R9520","pred":"nsubjpass","subj":"T13922","obj":"T13929"},{"id":"R9521","pred":"prep","subj":"T13923","obj":"T13922"},{"id":"R9522","pred":"pobj","subj":"T13924","obj":"T13923"},{"id":"R9524","pred":"cc","subj":"T13925","obj":"T13922"},{"id":"R9525","pred":"conj","subj":"T13926","obj":"T13922"},{"id":"R9526","pred":"aux","subj":"T13927","obj":"T13929"},{"id":"R9527","pred":"auxpass","subj":"T13928","obj":"T13929"},{"id":"R9529","pred":"ROOT","subj":"T13929","obj":"T13929"},{"id":"R9530","pred":"aux","subj":"T13930","obj":"T13932"},{"id":"R9531","pred":"advmod","subj":"T13931","obj":"T13932"},{"id":"R9533","pred":"xcomp","subj":"T13932","obj":"T13929"},{"id":"R9534","pred":"det","subj":"T13933","obj":"T13935"},{"id":"R9535","pred":"amod","subj":"T13934","obj":"T13935"},{"id":"R9537","pred":"dobj","subj":"T13935","obj":"T13932"},{"id":"R9539","pred":"prep","subj":"T13936","obj":"T13935"},{"id":"R9540","pred":"det","subj":"T13937","obj":"T13940"},{"id":"R9541","pred":"nummod","subj":"T13938","obj":"T13940"},{"id":"R9542","pred":"compound","subj":"T13939","obj":"T13940"},{"id":"R9544","pred":"pobj","subj":"T13940","obj":"T13936"},{"id":"R9545","pred":"prep","subj":"T13941","obj":"T13932"},{"id":"R9546","pred":"pobj","subj":"T13942","obj":"T13941"},{"id":"R9548","pred":"nsubj","subj":"T13943","obj":"T13944"},{"id":"R9549","pred":"conj","subj":"T13944","obj":"T13929"},{"id":"R9551","pred":"amod","subj":"T13945","obj":"T13947"},{"id":"R9552","pred":"compound","subj":"T13946","obj":"T13947"},{"id":"R9553","pred":"dobj","subj":"T13947","obj":"T13944"},{"id":"R9554","pred":"nmod","subj":"T13948","obj":"T13950"},{"id":"R9556","pred":"nummod","subj":"T13949","obj":"T13950"},{"id":"R9557","pred":"appos","subj":"T13950","obj":"T13947"},{"id":"R9558","pred":"punct","subj":"T13951","obj":"T13929"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    bionlp-st-ge-2016-test-tees

    {"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T11619","span":{"begin":113,"end":125},"obj":"Protein"},{"id":"T11618","span":{"begin":39,"end":43},"obj":"Protein"},{"id":"T11617","span":{"begin":30,"end":34},"obj":"Protein"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    testone

    {"project":"testone","denotations":[{"id":"T10792","span":{"begin":39,"end":43},"obj":"Protein"},{"id":"T10791","span":{"begin":30,"end":34},"obj":"Protein"},{"id":"T10880","span":{"begin":83,"end":90},"obj":"Binding"},{"id":"T10879","span":{"begin":70,"end":78},"obj":"Positive_regulation"},{"id":"T10878","span":{"begin":14,"end":26},"obj":"Binding"}],"relations":[{"id":"R7439","pred":"themeOf","subj":"T10791","obj":"T10878"},{"id":"R7440","pred":"themeOf","subj":"T10792","obj":"T10878"},{"id":"R7483","pred":"causeOf","subj":"T10878","obj":"T10879"},{"id":"R7484","pred":"themeOf","subj":"T10880","obj":"T10879"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}

    test3

    {"project":"test3","denotations":[{"id":"T11037","span":{"begin":83,"end":90},"obj":"Binding"},{"id":"T11036","span":{"begin":70,"end":78},"obj":"Positive_regulation"},{"id":"T11035","span":{"begin":39,"end":43},"obj":"Protein"},{"id":"T11034","span":{"begin":30,"end":34},"obj":"Protein"},{"id":"T10937","span":{"begin":39,"end":43},"obj":"Protein"},{"id":"T10936","span":{"begin":30,"end":34},"obj":"Protein"}],"relations":[{"id":"R7499","pred":"themeOf","subj":"T11037","obj":"T11036"}],"text":"Functionally, dimerization of Sox5 and Sox6 has been shown to greatly increase the binding efficiency of the two Sox proteins to DNA that contains adjacent Sox sites [6]."}