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PMC:1359074 / 25660-25806 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11867 141-145 NN denotes gene
T11866 134-140 NN denotes globin
T11865 131-133 JJ denotes ɛy
T11864 127-130 DT denotes the
T11863 124-126 IN denotes of
T11862 111-123 NN denotes upregulation
T11861 100-110 JJ denotes persistent
T11860 98-99 DT denotes a
T11859 94-97 CC denotes and
T11858 92-93 -COMMA- denotes ,
T11857 89-92 NN denotes βH1
T11856 85-88 CC denotes and
T11855 83-84 NN denotes ζ
T11854 81-82 -COMMA- denotes ,
T11853 76-81 NN denotes genes
T11852 69-75 NN denotes globin
T11851 59-68 JJ denotes embryonic
T11850 55-58 DT denotes the
T11849 52-54 IN denotes on
T11848 45-51 NN denotes effect
T11847 35-44 JJ denotes transient
T11846 33-34 DT denotes a
T11845 30-32 VB denotes is
T11844 24-29 EX denotes there
T11843 22-23 -COMMA- denotes ,
T11842 17-22 NN denotes mouse
T11841 12-16 JJ denotes null
T11840 7-11 NN denotes Sox6
T11839 3-6 DT denotes the
T11838 0-2 IN denotes In
R7710 T11842 T11838 arg2Of mouse,In
R7711 T11842 T11839 arg1Of mouse,the
R7712 T11842 T11840 arg1Of mouse,Sox6
R7713 T11842 T11841 arg1Of mouse,null
R7714 T11844 T11845 arg1Of there,is
R7715 T11845 T11838 arg1Of is,In
R7716 T11845 T11843 arg1Of is,","
R7717 T11848 T11845 arg2Of effect,is
R7718 T11848 T11846 arg1Of effect,a
R7719 T11848 T11847 arg1Of effect,transient
R7720 T11848 T11849 arg1Of effect,on
R7721 T11853 T11850 arg1Of genes,the
R7722 T11853 T11851 arg1Of genes,embryonic
R7723 T11853 T11852 arg1Of genes,globin
R7724 T11853 T11854 arg1Of genes,","
R7725 T11853 T11859 arg1Of genes,and
R7726 T11855 T11856 arg1Of ζ,and
R7727 T11856 T11854 arg2Of and,","
R7728 T11857 T11856 arg2Of βH1,and
R7729 T11859 T11849 arg2Of and,on
R7730 T11859 T11858 arg1Of and,","
R7731 T11862 T11859 arg2Of upregulation,and
R7732 T11862 T11860 arg1Of upregulation,a
R7733 T11862 T11861 arg1Of upregulation,persistent
R7734 T11862 T11863 arg1Of upregulation,of
R7735 T11867 T11863 arg2Of gene,of
R7736 T11867 T11864 arg1Of gene,the
R7737 T11867 T11865 arg1Of gene,ɛy
R7738 T11867 T11866 arg1Of gene,globin

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T11445 89-92 Antecedent denotes βH1
T11444 83-84 Antecedent denotes ζ
T11443 59-81 Anaphor denotes embryonic globin genes
R7667 T11443 T11444 boundBy embryonic globin genes,ζ
R7668 T11443 T11445 boundBy embryonic globin genes,βH1

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11465 131-140 Protein denotes ɛy globin
T11464 89-92 Protein denotes βH1
T11463 83-84 Protein denotes ζ
T11462 7-11 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13250 7-11 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T11206 134-140 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T11205 69-75 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T11556 134-140 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T11555 69-75 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

sentences

Id Subject Object Predicate Lexical cue
T11150 0-146 Sentence denotes In the Sox6 null mouse, there is a transient effect on the embryonic globin genes, ζ and βH1, and a persistent upregulation of the ɛy globin gene.
T199 0-146 Sentence denotes In the Sox6 null mouse, there is a transient effect on the embryonic globin genes, ζ and βH1, and a persistent upregulation of the ɛy globin gene.

simple1

Id Subject Object Predicate Lexical cue
T11729 131-140 Protein denotes ɛy globin
T11728 89-92 Protein denotes βH1
T11727 83-84 Protein denotes ζ
T11726 7-11 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15790 111-123 Positive_regulation denotes upregulation
T15789 45-51 Regulation denotes effect
T15700 131-140 Protein denotes ɛy globin
T15699 89-92 Protein denotes βH1
T15698 83-84 Protein denotes ζ
T15697 7-11 Protein denotes Sox6
R10997 T15698 T15789 themeOf ζ,effect
R10998 T15699 T15789 themeOf βH1,effect
R10999 T15700 T15790 themeOf ɛy globin,upregulation

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13379 111-123 Positive_regulation denotes upregulation
T13290 131-140 Protein denotes ɛy globin
T13289 89-92 Protein denotes βH1
T13288 83-84 Protein denotes ζ
T13287 7-11 Protein denotes Sox6
R9161 T13290 T13379 themeOf ɛy globin,upregulation

DLUT931

Id Subject Object Predicate Lexical cue
T13627 111-123 Positive_regulation denotes upregulation
T13626 45-51 Regulation denotes effect
T13625 12-16 Negative_regulation denotes null
T13536 131-140 Protein denotes ɛy globin
T13535 89-92 Protein denotes βH1
T13534 83-84 Protein denotes ζ
T13533 7-11 Protein denotes Sox6
R9241 T13533 T13625 themeOf Sox6,null
R9248 T13534 T13626 themeOf ζ,effect
R9249 T13535 T13626 themeOf βH1,effect
R9254 T13536 T13627 themeOf ɛy globin,upregulation
R9311 T13627 T13626 themeOf upregulation,effect

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15695 98-145 Positive_regulation denotes a persistent upregulation of the ɛy globin gene
T15601 124-145 Protein denotes of the ɛy globin gene
T15575 7-11 Protein denotes Sox6
T15550 55-81 Protein denotes the embryonic globin genes
T15522 83-84 Protein denotes ζ
T15492 55-81 Protein denotes the embryonic globin genes
T15490 89-93 Protein denotes βH1,
T15457 134-140 Protein denotes globin
T15439 59-68 Protein denotes embryonic
T15664 124-145 Protein denotes of the ɛy globin gene
R10989 T15601 T15695 themeOf of the ɛy globin gene,a persistent upregulation of the ɛy globin gene

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13854 145-146 . denotes .
T13853 141-145 NN denotes gene
T13852 134-140 NN denotes globin
T13851 131-133 JJ denotes ɛy
T13850 127-130 DT denotes the
T13849 124-126 IN denotes of
T13848 111-123 NN denotes upregulation
T13847 100-110 JJ denotes persistent
T13846 98-99 DT denotes a
T13845 94-97 CC denotes and
T13844 92-93 , denotes ,
T13843 89-92 NNP denotes βH1
T13842 85-88 CC denotes and
T13841 83-84 NN denotes ζ
T13840 81-82 , denotes ,
T13839 76-81 NNS denotes genes
T13838 69-75 NN denotes globin
T13837 59-68 JJ denotes embryonic
T13836 55-58 DT denotes the
T13835 52-54 IN denotes on
T13834 45-51 NN denotes effect
T13833 35-44 JJ denotes transient
T13832 33-34 DT denotes a
T13831 30-32 VBZ denotes is
T13830 24-29 EX denotes there
T13829 22-23 , denotes ,
T13828 17-22 NN denotes mouse
T13827 12-16 NN denotes null
T13826 7-11 NNP denotes Sox6
T13825 3-6 DT denotes the
T13824 0-2 IN denotes In
R9425 T13824 T13831 prep In,is
R9426 T13825 T13828 det the,mouse
R9428 T13826 T13828 compound Sox6,mouse
R9429 T13827 T13828 amod null,mouse
R9430 T13828 T13824 pobj mouse,In
R9431 T13829 T13831 punct ",",is
R9433 T13830 T13831 expl there,is
R9434 T13831 T13831 ROOT is,is
R9436 T13832 T13834 det a,effect
R9438 T13833 T13834 amod transient,effect
R9439 T13834 T13831 attr effect,is
R9441 T13846 T13848 det a,upregulation
R9442 T13835 T13834 prep on,effect
R9443 T13836 T13839 det the,genes
R9444 T13837 T13839 amod embryonic,genes
R9445 T13838 T13839 compound globin,genes
R9446 T13839 T13835 pobj genes,on
R9447 T13840 T13839 punct ",",genes
R9448 T13841 T13839 conj ζ,genes
R9449 T13842 T13841 cc and,ζ
R9450 T13843 T13841 conj βH1,ζ
R9451 T13844 T13843 punct ",",βH1
R9452 T13845 T13843 cc and,βH1
R9453 T13847 T13848 amod persistent,upregulation
R9454 T13848 T13843 conj upregulation,βH1
R9455 T13849 T13848 prep of,upregulation
R9456 T13850 T13853 det the,gene
R9458 T13851 T13853 amod ɛy,gene
R9461 T13852 T13853 compound globin,gene
R9465 T13853 T13849 pobj gene,of
R9468 T13854 T13831 punct .,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11607 45-51 Regulation denotes effect
T11606 111-123 Positive_regulation denotes upregulation
T11605 131-145 Protein denotes ɛy globin gene
T11604 69-81 Protein denotes globin genes
T11603 7-11 Protein denotes Sox6
R7680 T11604 T11607 causeOf globin genes,effect
R7681 T11605 T11606 themeOf ɛy globin gene,upregulation
R7682 T11606 T11607 themeOf upregulation,effect

testone

Id Subject Object Predicate Lexical cue
T10782 131-140 Protein denotes ɛy globin
T10781 89-92 Protein denotes βH1
T10780 83-84 Protein denotes ζ
T10779 7-11 Protein denotes Sox6
T10872 111-123 Positive_regulation denotes upregulation
T10871 45-51 Regulation denotes effect
R7434 T10782 T10872 themeOf ɛy globin,upregulation

test3

Id Subject Object Predicate Lexical cue
T11021 131-140 Protein denotes ɛy globin
T11020 111-123 Positive_regulation denotes upregulation
T11019 89-92 Protein denotes βH1
T11018 83-84 Protein denotes ζ
T11017 7-11 Protein denotes Sox6
T10927 131-140 Protein denotes ɛy globin
T10926 89-92 Protein denotes βH1
T10925 83-84 Protein denotes ζ
T10924 7-11 Protein denotes Sox6
R7492 T11021 T11020 themeOf ɛy globin,upregulation