PMC:1359074 / 20806-21803 JSON TXT

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pmc-enju-pas

bionlp-st-ge-2016-test-proteins

{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T9085","span":{"begin":982,"end":986},"obj":"Protein"},{"id":"T9084","span":{"begin":956,"end":958},"obj":"Protein"},{"id":"T9083","span":{"begin":805,"end":807},"obj":"Protein"},{"id":"T9082","span":{"begin":663,"end":673},"obj":"Protein"},{"id":"T9081","span":{"begin":658,"end":662},"obj":"Protein"},{"id":"T9080","span":{"begin":555,"end":557},"obj":"Protein"},{"id":"T9079","span":{"begin":420,"end":429},"obj":"Protein"},{"id":"T9078","span":{"begin":331,"end":340},"obj":"Protein"},{"id":"T9077","span":{"begin":258,"end":267},"obj":"Protein"},{"id":"T9076","span":{"begin":171,"end":180},"obj":"Protein"},{"id":"T9075","span":{"begin":14,"end":23},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

bionlp-st-ge-2016-uniprot

{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T9326","span":{"begin":982,"end":986},"obj":"http://www.uniprot.org/uniprot/P35712"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

UBERON-AE

{"project":"UBERON-AE","denotations":[{"id":"T9023","span":{"begin":897,"end":902},"obj":"http://purl.obolibrary.org/obo/UBERON_0002107"},{"id":"T9022","span":{"begin":589,"end":594},"obj":"http://purl.obolibrary.org/obo/UBERON_0002107"},{"id":"T9021","span":{"begin":466,"end":471},"obj":"http://purl.obolibrary.org/obo/UBERON_0002107"},{"id":"T9020","span":{"begin":362,"end":369},"obj":"http://purl.obolibrary.org/obo/UBERON_0000922"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

GO-BP

{"project":"GO-BP","denotations":[{"id":"T9039","span":{"begin":496,"end":510},"obj":"http://purl.obolibrary.org/obo/GO_0030218"},{"id":"T9038","span":{"begin":485,"end":510},"obj":"http://purl.obolibrary.org/obo/GO_0060318"},{"id":"T9037","span":{"begin":667,"end":673},"obj":"http://purl.obolibrary.org/obo/GO_0005344"},{"id":"T9036","span":{"begin":423,"end":429},"obj":"http://purl.obolibrary.org/obo/GO_0005344"},{"id":"T9035","span":{"begin":334,"end":340},"obj":"http://purl.obolibrary.org/obo/GO_0005344"},{"id":"T9034","span":{"begin":261,"end":267},"obj":"http://purl.obolibrary.org/obo/GO_0005344"},{"id":"T9033","span":{"begin":174,"end":180},"obj":"http://purl.obolibrary.org/obo/GO_0005344"},{"id":"T9032","span":{"begin":17,"end":23},"obj":"http://purl.obolibrary.org/obo/GO_0005344"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

GO-MF

{"project":"GO-MF","denotations":[{"id":"T9092","span":{"begin":667,"end":673},"obj":"http://purl.obolibrary.org/obo/GO_0005344"},{"id":"T9091","span":{"begin":423,"end":429},"obj":"http://purl.obolibrary.org/obo/GO_0005344"},{"id":"T9090","span":{"begin":334,"end":340},"obj":"http://purl.obolibrary.org/obo/GO_0005344"},{"id":"T9089","span":{"begin":261,"end":267},"obj":"http://purl.obolibrary.org/obo/GO_0005344"},{"id":"T9088","span":{"begin":174,"end":180},"obj":"http://purl.obolibrary.org/obo/GO_0005344"},{"id":"T9087","span":{"begin":17,"end":23},"obj":"http://purl.obolibrary.org/obo/GO_0005344"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

GO-CC

{"project":"GO-CC","denotations":[{"id":"T9093","span":{"begin":866,"end":871},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

sentences

{"project":"sentences","denotations":[{"id":"T9030","span":{"begin":747,"end":997},"obj":"Sentence"},{"id":"T9029","span":{"begin":631,"end":746},"obj":"Sentence"},{"id":"T9028","span":{"begin":525,"end":630},"obj":"Sentence"},{"id":"T9027","span":{"begin":407,"end":524},"obj":"Sentence"},{"id":"T9026","span":{"begin":121,"end":406},"obj":"Sentence"},{"id":"T9025","span":{"begin":0,"end":120},"obj":"Sentence"},{"id":"T152","span":{"begin":0,"end":120},"obj":"Sentence"},{"id":"T153","span":{"begin":121,"end":406},"obj":"Sentence"},{"id":"T154","span":{"begin":407,"end":524},"obj":"Sentence"},{"id":"T155","span":{"begin":525,"end":630},"obj":"Sentence"},{"id":"T156","span":{"begin":631,"end":746},"obj":"Sentence"},{"id":"T157","span":{"begin":747,"end":997},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

simple1

{"project":"simple1","denotations":[{"id":"T9128","span":{"begin":982,"end":986},"obj":"Protein"},{"id":"T9127","span":{"begin":956,"end":958},"obj":"Protein"},{"id":"T9126","span":{"begin":805,"end":807},"obj":"Protein"},{"id":"T9125","span":{"begin":663,"end":673},"obj":"Protein"},{"id":"T9124","span":{"begin":658,"end":662},"obj":"Protein"},{"id":"T9123","span":{"begin":555,"end":557},"obj":"Protein"},{"id":"T9122","span":{"begin":420,"end":429},"obj":"Protein"},{"id":"T9121","span":{"begin":331,"end":340},"obj":"Protein"},{"id":"T9120","span":{"begin":258,"end":267},"obj":"Protein"},{"id":"T9119","span":{"begin":171,"end":180},"obj":"Protein"},{"id":"T9118","span":{"begin":14,"end":23},"obj":"Protein"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

BioNLP16_DUT

{"project":"BioNLP16_DUT","denotations":[{"id":"T9712","span":{"begin":942,"end":948},"obj":"Negative_regulation"},{"id":"T9711","span":{"begin":827,"end":837},"obj":"Gene_expression"},{"id":"T9710","span":{"begin":987,"end":991},"obj":"Negative_regulation"},{"id":"T9709","span":{"begin":644,"end":654},"obj":"Gene_expression"},{"id":"T9708","span":{"begin":563,"end":573},"obj":"Transcription"},{"id":"T9707","span":{"begin":437,"end":446},"obj":"Gene_expression"},{"id":"T9706","span":{"begin":157,"end":167},"obj":"Gene_expression"},{"id":"T9705","span":{"begin":229,"end":232},"obj":"Positive_regulation"},{"id":"T9704","span":{"begin":244,"end":254},"obj":"Gene_expression"},{"id":"T9703","span":{"begin":44,"end":53},"obj":"Gene_expression"},{"id":"T9702","span":{"begin":84,"end":92},"obj":"Negative_regulation"},{"id":"T9699","span":{"begin":982,"end":986},"obj":"Protein"},{"id":"T9698","span":{"begin":956,"end":958},"obj":"Protein"},{"id":"T9697","span":{"begin":805,"end":807},"obj":"Protein"},{"id":"T9696","span":{"begin":663,"end":673},"obj":"Protein"},{"id":"T9695","span":{"begin":658,"end":662},"obj":"Protein"},{"id":"T9694","span":{"begin":555,"end":557},"obj":"Protein"},{"id":"T9693","span":{"begin":420,"end":429},"obj":"Protein"},{"id":"T9692","span":{"begin":331,"end":340},"obj":"Protein"},{"id":"T9691","span":{"begin":258,"end":267},"obj":"Protein"},{"id":"T9690","span":{"begin":171,"end":180},"obj":"Protein"},{"id":"T9689","span":{"begin":14,"end":23},"obj":"Protein"}],"relations":[{"id":"R6747","pred":"themeOf","subj":"T9689","obj":"T9702"},{"id":"R6748","pred":"themeOf","subj":"T9689","obj":"T9703"},{"id":"R6749","pred":"themeOf","subj":"T9690","obj":"T9706"},{"id":"R6750","pred":"themeOf","subj":"T9691","obj":"T9704"},{"id":"R6751","pred":"themeOf","subj":"T9693","obj":"T9707"},{"id":"R6752","pred":"themeOf","subj":"T9694","obj":"T9708"},{"id":"R6753","pred":"themeOf","subj":"T9695","obj":"T9709"},{"id":"R6754","pred":"themeOf","subj":"T9696","obj":"T9709"},{"id":"R6755","pred":"themeOf","subj":"T9697","obj":"T9711"},{"id":"R6756","pred":"themeOf","subj":"T9698","obj":"T9712"},{"id":"R6757","pred":"themeOf","subj":"T9699","obj":"T9710"},{"id":"R6758","pred":"themeOf","subj":"T9704","obj":"T9705"},{"id":"R6759","pred":"themeOf","subj":"T9706","obj":"T9705"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

BioNLP16_Messiy

{"project":"BioNLP16_Messiy","denotations":[{"id":"T9332","span":{"begin":258,"end":267},"obj":"Protein"},{"id":"T9331","span":{"begin":171,"end":180},"obj":"Protein"},{"id":"T9330","span":{"begin":14,"end":23},"obj":"Protein"},{"id":"T9352","span":{"begin":827,"end":837},"obj":"Gene_expression"},{"id":"T9351","span":{"begin":942,"end":948},"obj":"Negative_regulation"},{"id":"T9350","span":{"begin":987,"end":991},"obj":"Negative_regulation"},{"id":"T9349","span":{"begin":644,"end":654},"obj":"Gene_expression"},{"id":"T9348","span":{"begin":563,"end":573},"obj":"Transcription"},{"id":"T9347","span":{"begin":437,"end":446},"obj":"Gene_expression"},{"id":"T9346","span":{"begin":157,"end":167},"obj":"Gene_expression"},{"id":"T9345","span":{"begin":244,"end":254},"obj":"Gene_expression"},{"id":"T9344","span":{"begin":229,"end":232},"obj":"Positive_regulation"},{"id":"T9343","span":{"begin":44,"end":53},"obj":"Gene_expression"},{"id":"T9340","span":{"begin":982,"end":986},"obj":"Protein"},{"id":"T9339","span":{"begin":956,"end":958},"obj":"Protein"},{"id":"T9338","span":{"begin":805,"end":807},"obj":"Protein"},{"id":"T9337","span":{"begin":663,"end":673},"obj":"Protein"},{"id":"T9336","span":{"begin":658,"end":662},"obj":"Protein"},{"id":"T9335","span":{"begin":555,"end":557},"obj":"Protein"},{"id":"T9334","span":{"begin":420,"end":429},"obj":"Protein"},{"id":"T9333","span":{"begin":331,"end":340},"obj":"Protein"}],"relations":[{"id":"R6474","pred":"themeOf","subj":"T9330","obj":"T9343"},{"id":"R6475","pred":"themeOf","subj":"T9331","obj":"T9346"},{"id":"R6476","pred":"themeOf","subj":"T9332","obj":"T9345"},{"id":"R6477","pred":"themeOf","subj":"T9334","obj":"T9347"},{"id":"R6478","pred":"themeOf","subj":"T9335","obj":"T9348"},{"id":"R6479","pred":"themeOf","subj":"T9336","obj":"T9349"},{"id":"R6480","pred":"themeOf","subj":"T9337","obj":"T9349"},{"id":"R6481","pred":"themeOf","subj":"T9338","obj":"T9352"},{"id":"R6482","pred":"themeOf","subj":"T9339","obj":"T9351"},{"id":"R6483","pred":"themeOf","subj":"T9340","obj":"T9350"},{"id":"R6484","pred":"themeOf","subj":"T9345","obj":"T9344"},{"id":"R6485","pred":"themeOf","subj":"T9346","obj":"T9344"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

DLUT931

bionlp-st-ge-2016-test-ihmc

{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T9685","span":{"begin":10,"end":119},"obj":"Gene_expression"},{"id":"T9684","span":{"begin":420,"end":472},"obj":"Gene_expression"},{"id":"T9683","span":{"begin":255,"end":294},"obj":"Localization"},{"id":"T9682","span":{"begin":10,"end":119},"obj":"Negative_regulation"},{"id":"T9680","span":{"begin":236,"end":294},"obj":"Gene_expression"},{"id":"T9679","span":{"begin":142,"end":180},"obj":"Gene_expression"},{"id":"T9678","span":{"begin":525,"end":614},"obj":"Transcription"},{"id":"T9677","span":{"begin":525,"end":614},"obj":"Gene_expression"},{"id":"T9676","span":{"begin":640,"end":673},"obj":"Gene_expression"},{"id":"T9674","span":{"begin":10,"end":28},"obj":"Protein"},{"id":"T9672","span":{"begin":255,"end":294},"obj":"Protein"},{"id":"T9671","span":{"begin":805,"end":807},"obj":"Protein"},{"id":"T9670","span":{"begin":191,"end":222},"obj":"Entity"},{"id":"T9669","span":{"begin":17,"end":23},"obj":"Protein"},{"id":"T9668","span":{"begin":982,"end":996},"obj":"Protein"},{"id":"T9667","span":{"begin":10,"end":28},"obj":"Protein"},{"id":"T9666","span":{"begin":709,"end":726},"obj":"Protein"},{"id":"T9665","span":{"begin":334,"end":340},"obj":"Entity"},{"id":"T9664","span":{"begin":558,"end":562},"obj":"Protein"},{"id":"T9663","span":{"begin":743,"end":744},"obj":"Entity"},{"id":"T9661","span":{"begin":616,"end":628},"obj":"Entity"},{"id":"T9660","span":{"begin":331,"end":352},"obj":"Protein"},{"id":"T9659","span":{"begin":841,"end":902},"obj":"Entity"},{"id":"T9658","span":{"begin":420,"end":429},"obj":"Protein"},{"id":"T9657","span":{"begin":96,"end":119},"obj":"Entity"},{"id":"T9656","span":{"begin":271,"end":294},"obj":"Entity"},{"id":"T9655","span":{"begin":658,"end":662},"obj":"Protein"},{"id":"T9654","span":{"begin":655,"end":673},"obj":"Protein"},{"id":"T9653","span":{"begin":331,"end":352},"obj":"Protein"},{"id":"T9651","span":{"begin":956,"end":958},"obj":"Protein"},{"id":"T9650","span":{"begin":168,"end":180},"obj":"Protein"},{"id":"T9649","span":{"begin":538,"end":573},"obj":"Protein"},{"id":"T9648","span":{"begin":57,"end":79},"obj":"Entity"}],"relations":[{"id":"R6734","pred":"themeOf","subj":"T9650","obj":"T9679"},{"id":"R6735","pred":"themeOf","subj":"T9654","obj":"T9676"},{"id":"R6736","pred":"locationOf","subj":"T9656","obj":"T9683"},{"id":"R6737","pred":"themeOf","subj":"T9658","obj":"T9684"},{"id":"R6738","pred":"themeOf","subj":"T9664","obj":"T9677"},{"id":"R6739","pred":"themeOf","subj":"T9664","obj":"T9678"},{"id":"R6740","pred":"themeOf","subj":"T9667","obj":"T9682"},{"id":"R6741","pred":"themeOf","subj":"T9667","obj":"T9685"},{"id":"R6742","pred":"themeOf","subj":"T9672","obj":"T9680"},{"id":"R6743","pred":"themeOf","subj":"T9672","obj":"T9683"}],"attributes":[{"id":"M22","pred":"Negation","subj":"T9684","obj":"true"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

bionlp-st-ge-2016-spacy-parsed

bionlp-st-ge-2016-test-tees

{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T9114","span":{"begin":982,"end":986},"obj":"Protein"},{"id":"T9113","span":{"begin":644,"end":654},"obj":"Gene_expression"},{"id":"T9112","span":{"begin":702,"end":704},"obj":"Protein"},{"id":"T9111","span":{"begin":667,"end":673},"obj":"Protein"},{"id":"T9110","span":{"begin":563,"end":573},"obj":"Gene_expression"},{"id":"T9109","span":{"begin":555,"end":562},"obj":"Protein"},{"id":"T9108","span":{"begin":437,"end":446},"obj":"Gene_expression"},{"id":"T9107","span":{"begin":420,"end":429},"obj":"Protein"},{"id":"T9106","span":{"begin":244,"end":254},"obj":"Gene_expression"},{"id":"T9105","span":{"begin":184,"end":187},"obj":"Positive_regulation"},{"id":"T9104","span":{"begin":157,"end":167},"obj":"Gene_expression"},{"id":"T9103","span":{"begin":334,"end":352},"obj":"Protein"},{"id":"T9102","span":{"begin":261,"end":267},"obj":"Protein"},{"id":"T9101","span":{"begin":171,"end":180},"obj":"Protein"},{"id":"T9100","span":{"begin":84,"end":92},"obj":"Positive_regulation"},{"id":"T9099","span":{"begin":44,"end":53},"obj":"Gene_expression"},{"id":"T9098","span":{"begin":14,"end":28},"obj":"Protein"}],"relations":[{"id":"R6264","pred":"themeOf","subj":"T9098","obj":"T9099"},{"id":"R6265","pred":"themeOf","subj":"T9098","obj":"T9100"},{"id":"R6266","pred":"themeOf","subj":"T9101","obj":"T9104"},{"id":"R6267","pred":"themeOf","subj":"T9102","obj":"T9106"},{"id":"R6268","pred":"themeOf","subj":"T9104","obj":"T9105"},{"id":"R6269","pred":"themeOf","subj":"T9107","obj":"T9108"},{"id":"R6270","pred":"themeOf","subj":"T9109","obj":"T9110"},{"id":"R6271","pred":"themeOf","subj":"T9111","obj":"T9113"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

testone

{"project":"testone","denotations":[{"id":"T8982","span":{"begin":942,"end":948},"obj":"Negative_regulation"},{"id":"T8981","span":{"begin":644,"end":654},"obj":"Gene_expression"},{"id":"T8980","span":{"begin":558,"end":562},"obj":"Transcription"},{"id":"T8979","span":{"begin":437,"end":446},"obj":"Gene_expression"},{"id":"T8978","span":{"begin":157,"end":167},"obj":"Gene_expression"},{"id":"T8977","span":{"begin":44,"end":53},"obj":"Gene_expression"},{"id":"T8974","span":{"begin":982,"end":986},"obj":"Protein"},{"id":"T8973","span":{"begin":956,"end":958},"obj":"Protein"},{"id":"T8972","span":{"begin":805,"end":807},"obj":"Protein"},{"id":"T8971","span":{"begin":663,"end":673},"obj":"Protein"},{"id":"T8970","span":{"begin":658,"end":662},"obj":"Protein"},{"id":"T8969","span":{"begin":555,"end":557},"obj":"Protein"},{"id":"T8968","span":{"begin":420,"end":429},"obj":"Protein"},{"id":"T8967","span":{"begin":331,"end":340},"obj":"Protein"},{"id":"T8966","span":{"begin":258,"end":267},"obj":"Protein"},{"id":"T8965","span":{"begin":171,"end":180},"obj":"Protein"},{"id":"T8964","span":{"begin":14,"end":23},"obj":"Protein"}],"relations":[{"id":"R6228","pred":"themeOf","subj":"T8964","obj":"T8977"},{"id":"R6229","pred":"themeOf","subj":"T8965","obj":"T8978"},{"id":"R6230","pred":"themeOf","subj":"T8968","obj":"T8979"},{"id":"R6231","pred":"themeOf","subj":"T8970","obj":"T8981"},{"id":"R6232","pred":"themeOf","subj":"T8971","obj":"T8981"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

test3

{"project":"test3","denotations":[{"id":"T9019","span":{"begin":982,"end":986},"obj":"Protein"},{"id":"T9018","span":{"begin":956,"end":958},"obj":"Protein"},{"id":"T9017","span":{"begin":805,"end":807},"obj":"Protein"},{"id":"T9016","span":{"begin":663,"end":673},"obj":"Protein"},{"id":"T9015","span":{"begin":658,"end":662},"obj":"Protein"},{"id":"T9014","span":{"begin":644,"end":654},"obj":"Gene_expression"},{"id":"T9013","span":{"begin":558,"end":573},"obj":"Transcription"},{"id":"T9012","span":{"begin":555,"end":557},"obj":"Protein"},{"id":"T9011","span":{"begin":437,"end":446},"obj":"Gene_expression"},{"id":"T9010","span":{"begin":420,"end":429},"obj":"Protein"},{"id":"T9009","span":{"begin":331,"end":340},"obj":"Protein"},{"id":"T9008","span":{"begin":258,"end":267},"obj":"Protein"},{"id":"T9007","span":{"begin":244,"end":254},"obj":"Gene_expression"},{"id":"T9006","span":{"begin":229,"end":232},"obj":"Positive_regulation"},{"id":"T9005","span":{"begin":171,"end":180},"obj":"Protein"},{"id":"T9004","span":{"begin":157,"end":167},"obj":"Gene_expression"},{"id":"T9003","span":{"begin":44,"end":53},"obj":"Gene_expression"},{"id":"T9002","span":{"begin":14,"end":23},"obj":"Protein"},{"id":"T8996","span":{"begin":982,"end":986},"obj":"Protein"},{"id":"T8995","span":{"begin":956,"end":958},"obj":"Protein"},{"id":"T8994","span":{"begin":805,"end":807},"obj":"Protein"},{"id":"T8993","span":{"begin":663,"end":673},"obj":"Protein"},{"id":"T8992","span":{"begin":658,"end":662},"obj":"Protein"},{"id":"T8991","span":{"begin":555,"end":557},"obj":"Protein"},{"id":"T8990","span":{"begin":420,"end":429},"obj":"Protein"},{"id":"T8989","span":{"begin":331,"end":340},"obj":"Protein"},{"id":"T8988","span":{"begin":258,"end":267},"obj":"Protein"},{"id":"T8987","span":{"begin":171,"end":180},"obj":"Protein"},{"id":"T8986","span":{"begin":14,"end":23},"obj":"Protein"}],"relations":[{"id":"R6235","pred":"themeOf","subj":"T9002","obj":"T9003"},{"id":"R6236","pred":"themeOf","subj":"T9004","obj":"T9006"},{"id":"R6237","pred":"themeOf","subj":"T9005","obj":"T9004"},{"id":"R6238","pred":"themeOf","subj":"T9008","obj":"T9007"},{"id":"R6239","pred":"themeOf","subj":"T9010","obj":"T9011"},{"id":"R6240","pred":"themeOf","subj":"T9012","obj":"T9013"},{"id":"R6241","pred":"themeOf","subj":"T9015","obj":"T9014"},{"id":"R6242","pred":"themeOf","subj":"T9016","obj":"T9014"}],"text":"Normally, the ɛy globin gene is exclusively expressed in primitive erythrocytes and silenced in definitive erythrocytes. To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5). As expected, ɛy globin is not expressed in the WT 14.5-dpc liver, the site of definitive erythropoiesis in the fetus. In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D). However, the expression of βmaj/min globin is equally abundant in both WT and p100H mutant mice (Figure 5 E and F). These data demonstrate that the persistent high levels of ɛy are due to ectopic expression in the definitive erythroid cells that mature in the fetal liver, suggesting that there is an intrinsic defect of the ɛy silencing mechanism in Sox6-null mice."}

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