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PMC:1359074 / 18391-18528 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7712 4-10 JJ denotes intact
T7711 0-3 DT denotes The
T7736 135-136 -RRB- denotes )
T7735 133-135 NN denotes 3E
T7734 126-132 NN denotes Figure
T7733 125-126 -LRB- denotes (
T7732 119-124 NN denotes assay
T7731 107-118 NN denotes competition
T7730 103-106 DT denotes the
T7729 100-102 IN denotes in
T7728 94-99 VB denotes shown
T7727 91-93 IN denotes as
T7726 89-90 -COMMA- denotes ,
T7725 82-89 NN denotes binding
T7724 78-81 DT denotes the
T7723 74-77 IN denotes for
T7722 65-73 VB denotes required
T7721 61-64 VB denotes are
T7720 55-60 NN denotes probe
T7719 51-54 NN denotes DNA
T7718 47-50 DT denotes the
T7717 44-46 IN denotes of
T7716 38-43 NN denotes sites
T7715 30-37 NN denotes binding
T7714 21-29 NN denotes Sox/Sox6
T7713 11-20 NN denotes consensus
R5309 T7716 T7711 arg1Of sites,The
R5317 T7716 T7712 arg1Of sites,intact
R5318 T7716 T7713 arg1Of sites,consensus
R5319 T7716 T7714 arg1Of sites,Sox/Sox6
R5320 T7716 T7715 arg1Of sites,binding
R5321 T7716 T7717 arg1Of sites,of
R5327 T7716 T7721 arg1Of sites,are
R5328 T7716 T7722 arg2Of sites,required
R5329 T7720 T7717 arg2Of probe,of
R5341 T7720 T7718 arg1Of probe,the
R5346 T7720 T7719 arg1Of probe,DNA
R5347 T7722 T7721 arg2Of required,are
R5356 T7722 T7723 arg1Of required,for
R5357 T7722 T7726 arg1Of required,","
R5361 T7722 T7727 arg1Of required,as
R5362 T7725 T7723 arg2Of binding,for
R5363 T7725 T7724 arg1Of binding,the
R5373 T7728 T7727 arg2Of shown,as
R5374 T7728 T7729 arg1Of shown,in
R5375 T7732 T7729 arg2Of assay,in
R5391 T7732 T7730 arg1Of assay,the
R5392 T7732 T7731 arg1Of assay,competition
R5393 T7732 T7733 arg1Of assay,(
R5394 T7735 T7733 arg2Of 3E,(
R5403 T7735 T7734 arg1Of 3E,Figure
R5404 T7736 T7733 arg3Of ),(

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7978 25-29 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-MF

Id Subject Object Predicate Lexical cue
T7279 82-89 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7278 30-37 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T7155 0-137 Sentence denotes The intact consensus Sox/Sox6 binding sites of the DNA probe are required for the binding, as shown in the competition assay (Figure 3E).
T131 0-137 Sentence denotes The intact consensus Sox/Sox6 binding sites of the DNA probe are required for the binding, as shown in the competition assay (Figure 3E).

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8855 0-60 Binding denotes The intact consensus Sox/Sox6 binding sites of the DNA probe
T8840 38-43 Entity denotes sites
T8820 103-136 Entity denotes the competition assay (Figure 3E)
T8796 47-60 Entity denotes the DNA probe
T8795 0-60 Protein denotes The intact consensus Sox/Sox6 binding sites of the DNA probe
R6192 T8795 T8855 themeOf The intact consensus Sox/Sox6 binding sites of the DNA probe,The intact consensus Sox/Sox6 binding sites of the DNA probe

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8458 136-137 . denotes .
T8457 135-136 -RRB- denotes )
T8456 133-135 CD denotes 3E
T8455 126-132 NN denotes Figure
T8454 125-126 -LRB- denotes (
T8453 119-124 NN denotes assay
T8452 107-118 NN denotes competition
T8451 103-106 DT denotes the
T8450 100-102 IN denotes in
T8449 94-99 VBN denotes shown
T8448 91-93 IN denotes as
T8447 89-90 , denotes ,
T8446 82-89 JJ denotes binding
T8445 78-81 DT denotes the
T8444 74-77 IN denotes for
T8443 65-73 VBN denotes required
T8442 61-64 VBP denotes are
T8441 55-60 NN denotes probe
T8440 51-54 NNP denotes DNA
T8439 47-50 DT denotes the
T8438 44-46 IN denotes of
T8437 38-43 NNS denotes sites
T8436 30-37 JJ denotes binding
T8435 21-29 NNP denotes Sox/Sox6
T8434 11-20 NN denotes consensus
T8433 4-10 JJ denotes intact
T8432 0-3 DT denotes The
R5874 T8432 T8434 det The,consensus
R5875 T8433 T8434 amod intact,consensus
R5876 T8434 T8434 ROOT consensus,consensus
R5878 T8435 T8434 appos Sox/Sox6,consensus
R5880 T8436 T8437 amod binding,sites
R5882 T8437 T8443 nsubjpass sites,required
R5883 T8438 T8437 prep of,sites
R5885 T8439 T8441 det the,probe
R5886 T8440 T8441 compound DNA,probe
R5888 T8441 T8438 pobj probe,of
R5889 T8442 T8443 auxpass are,required
R5890 T8443 T8434 relcl required,consensus
R5892 T8444 T8443 prep for,required
R5893 T8445 T8446 det the,binding
R5895 T8446 T8444 pobj binding,for
R5896 T8447 T8443 punct ",",required
R5898 T8448 T8449 mark as,shown
R5899 T8449 T8443 advcl shown,required
R5900 T8450 T8449 prep in,shown
R5902 T8451 T8453 det the,assay
R5903 T8452 T8453 compound competition,assay
R5905 T8453 T8450 pobj assay,in
R5906 T8454 T8455 punct (,Figure
R5907 T8455 T8453 appos Figure,assay
R5908 T8456 T8455 nummod 3E,Figure
R5909 T8457 T8455 punct ),Figure
R5910 T8458 T8443 punct .,required

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7370 65-73 Positive_regulation denotes required
T7369 65-73 Positive_regulation denotes required
T7368 82-89 Binding denotes binding
T7367 82-89 Binding denotes binding
T7366 25-29 Protein denotes Sox6
T7365 21-24 Protein denotes Sox
R4990 T7365 T7367 themeOf Sox,binding
R4991 T7366 T7368 themeOf Sox6,binding
R4992 T7367 T7369 themeOf binding,required
R4993 T7368 T7370 themeOf binding,required

testone

Id Subject Object Predicate Lexical cue
T7051 82-89 Binding denotes binding
T7050 65-73 Positive_regulation denotes required
R4912 T7051 T7050 themeOf binding,required