> top > docs > PMC:1359074 > spans > 18147-18697 > annotations

PMC:1359074 / 18147-18697 JSONTXT

Annnotations TAB JSON ListView MergeView

2_test

Id Subject Object Predicate Lexical cue
16462943-283312-85760997 172-174 283312 denotes 33
T6698 172-174 283312 denotes 33

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7768 542-549 NN denotes binding
T7767 539-541 NN denotes WT
T7766 534-538 IN denotes with
T7765 524-533 RB denotes partially
T7764 516-523 VB denotes compete
T7763 512-515 MD denotes may
T7762 506-511 NN denotes probe
T7761 499-505 JJ denotes mutant
T7760 496-498 NN denotes M2
T7759 492-495 DT denotes The
T7712 248-254 JJ denotes intact
T7711 244-247 DT denotes The
T7710 241-242 -RRB- denotes )
T7709 239-241 NN denotes 3D
T7708 232-238 NN denotes Figure
T7707 231-232 -LRB- denotes (
T7706 225-230 NN denotes cells
T7705 221-224 NN denotes MEL
T7704 218-220 IN denotes in
T7703 209-217 NN denotes sequence
T7702 205-208 NN denotes DNA
T7701 200-204 DT denotes this
T7700 197-199 TO denotes to
T7699 191-196 VB denotes binds
T7698 182-190 RB denotes directly
T7697 177-181 NN denotes Sox6
T7696 174-175 -RRB- denotes ]
T7695 172-174 CD denotes 33
T7694 171-172 -LRB- denotes [
T7693 168-170 VB denotes ɛy
T7692 164-167 RB denotes not
T7691 160-163 CC denotes but
T7690 158-159 -COMMA- denotes ,
T7689 151-158 NN denotes globins
T7688 149-150 NN denotes β
T7687 143-148 JJ denotes adult
T7686 135-142 VB denotes express
T7685 133-134 -COMMA- denotes ,
T7684 129-133 NN denotes line
T7683 124-128 NN denotes cell
T7682 108-123 JJ denotes erythroleukemic
T7681 101-107 JJ denotes murine
T7680 99-100 DT denotes a
T7679 97-98 -COMMA- denotes ,
T7678 92-97 NN denotes cells
T7677 88-91 NN denotes MEL
T7676 81-86 NN denotes probe
T7675 75-80 JJ denotes 36-bp
T7674 70-74 JJ denotes same
T7673 66-69 DT denotes the
T7672 56-65 VB denotes employing
T7671 51-55 NN denotes EMSA
T7670 48-50 IN denotes in
T7669 43-47 VB denotes used
T7668 38-42 VB denotes were
T7667 32-37 NN denotes cells
T7666 28-31 NN denotes MEL
T7665 23-27 IN denotes from
T7664 14-22 NN denotes extracts
T7663 6-13 JJ denotes nuclear
T7662 4-5 -COMMA- denotes ,
T7661 0-4 RB denotes Next
T7758 489-490 -RRB- denotes )
T7757 487-489 NN denotes 3E
T7756 480-486 NN denotes Figure
T7755 479-480 -LRB- denotes (
T7754 474-478 NN denotes EMSA
T7753 471-473 IN denotes in
T7752 463-470 VB denotes compete
T7751 460-462 TO denotes to
T7750 452-459 NN denotes ability
T7749 446-451 PRP-DOLLAR- denotes their
T7748 438-445 VB denotes abolish
T7747 436-437 -RRB- denotes )
T7746 434-436 NN denotes M3
T7745 430-433 CC denotes and
T7744 427-429 NN denotes M1
T7743 426-427 -LRB- denotes (
T7742 420-425 NN denotes sites
T7741 412-419 NN denotes binding
T7740 403-411 NN denotes Sox/Sox6
T7739 394-402 JJ denotes putative
T7738 391-393 IN denotes of
T7737 382-390 NN denotes Ablation
T7736 379-380 -RRB- denotes )
T7735 377-379 NN denotes 3E
T7734 370-376 NN denotes Figure
T7733 369-370 -LRB- denotes (
T7732 363-368 NN denotes assay
T7731 351-362 NN denotes competition
T7730 347-350 DT denotes the
T7729 344-346 IN denotes in
T7728 338-343 VB denotes shown
T7727 335-337 IN denotes as
T7726 333-334 -COMMA- denotes ,
T7725 326-333 NN denotes binding
T7724 322-325 DT denotes the
T7723 318-321 IN denotes for
T7722 309-317 VB denotes required
T7721 305-308 VB denotes are
T7720 299-304 NN denotes probe
T7719 295-298 NN denotes DNA
T7718 291-294 DT denotes the
T7717 288-290 IN denotes of
T7716 282-287 NN denotes sites
T7715 274-281 NN denotes binding
T7714 265-273 NN denotes Sox/Sox6
T7713 255-264 NN denotes consensus
R5135 T7664 T7663 arg1Of extracts,nuclear
R5138 T7664 T7665 arg1Of extracts,from
R5139 T7664 T7668 arg1Of extracts,were
R5140 T7664 T7669 arg2Of extracts,used
R5147 T7667 T7665 arg2Of cells,from
R5157 T7667 T7666 arg1Of cells,MEL
R5159 T7669 T7661 arg1Of used,Next
R5165 T7669 T7662 arg1Of used,","
R5166 T7669 T7668 arg2Of used,were
R5167 T7669 T7670 arg1Of used,in
R5172 T7671 T7670 arg2Of EMSA,in
R5179 T7671 T7672 arg1Of EMSA,employing
R5181 T7676 T7672 arg2Of probe,employing
R5191 T7676 T7673 arg1Of probe,the
R5194 T7676 T7674 arg1Of probe,same
R5196 T7676 T7675 arg1Of probe,36-bp
R5197 T7678 T7677 arg1Of cells,MEL
R5208 T7678 T7679 arg1Of cells,","
R5209 T7678 T7686 arg1Of cells,express
R5213 T7678 T7693 arg1Of cells,ɛy
R5214 T7684 T7679 arg2Of line,","
R5220 T7684 T7680 arg1Of line,a
R5221 T7684 T7681 arg1Of line,murine
R5222 T7684 T7682 arg1Of line,erythroleukemic
R5223 T7684 T7683 arg1Of line,cell
R5224 T7686 T7691 arg1Of express,but
R5231 T7689 T7686 arg2Of globins,express
R5243 T7689 T7687 arg1Of globins,adult
R5244 T7689 T7688 arg1Of globins,β
R5245 T7691 T7685 arg1Of but,","
R5254 T7691 T7690 arg1Of but,","
R5257 T7691 T7692 arg1Of but,not
R5258 T7693 T7691 arg2Of ɛy,but
R5266 T7693 T7694 arg1Of ɛy,[
R5267 T7695 T7694 arg2Of 33,[
R5268 T7696 T7694 arg3Of ],[
R5269 T7697 T7699 arg1Of Sox6,binds
R5270 T7699 T7698 arg1Of binds,directly
R5271 T7699 T7700 arg1Of binds,to
R5272 T7703 T7700 arg2Of sequence,to
R5273 T7742 T7738 arg2Of sites,of
R5274 T7742 T7739 arg1Of sites,putative
R5275 T7742 T7740 arg1Of sites,Sox/Sox6
R5276 T7742 T7741 arg1Of sites,binding
R5277 T7742 T7743 arg1Of sites,(
R5278 T7744 T7745 arg1Of M1,and
R5279 T7745 T7743 arg2Of and,(
R5280 T7746 T7745 arg2Of M3,and
R5281 T7703 T7701 arg1Of sequence,this
R5282 T7747 T7743 arg3Of ),(
R5283 T7703 T7702 arg1Of sequence,DNA
R5284 T7703 T7704 arg1Of sequence,in
R5285 T7706 T7704 arg2Of cells,in
R5286 T7750 T7748 arg2Of ability,abolish
R5287 T7750 T7749 arg1Of ability,their
R5288 T7750 T7751 modOf ability,to
R5289 T7752 T7751 arg1Of compete,to
R5290 T7752 T7753 arg1Of compete,in
R5291 T7706 T7705 arg1Of cells,MEL
R5292 T7706 T7707 arg1Of cells,(
R5293 T7709 T7707 arg2Of 3D,(
R5294 T7754 T7753 arg2Of EMSA,in
R5295 T7754 T7755 arg1Of EMSA,(
R5296 T7709 T7708 arg1Of 3D,Figure
R5297 T7757 T7755 arg2Of 3E,(
R5298 T7757 T7756 arg1Of 3E,Figure
R5299 T7758 T7755 arg3Of ),(
R5300 T7710 T7707 arg3Of ),(
R5301 T7762 T7759 arg1Of probe,The
R5302 T7762 T7760 arg1Of probe,M2
R5303 T7762 T7761 arg1Of probe,mutant
R5304 T7762 T7763 arg1Of probe,may
R5305 T7762 T7764 arg1Of probe,compete
R5306 T7764 T7763 arg2Of compete,may
R5307 T7764 T7765 arg1Of compete,partially
R5308 T7764 T7766 arg1Of compete,with
R5309 T7716 T7711 arg1Of sites,The
R5310 T7768 T7766 arg2Of binding,with
R5311 T7768 T7767 arg1Of binding,WT
R5317 T7716 T7712 arg1Of sites,intact
R5318 T7716 T7713 arg1Of sites,consensus
R5319 T7716 T7714 arg1Of sites,Sox/Sox6
R5320 T7716 T7715 arg1Of sites,binding
R5321 T7716 T7717 arg1Of sites,of
R5327 T7716 T7721 arg1Of sites,are
R5328 T7716 T7722 arg2Of sites,required
R5329 T7720 T7717 arg2Of probe,of
R5341 T7720 T7718 arg1Of probe,the
R5346 T7720 T7719 arg1Of probe,DNA
R5347 T7722 T7721 arg2Of required,are
R5356 T7722 T7723 arg1Of required,for
R5357 T7722 T7726 arg1Of required,","
R5361 T7722 T7727 arg1Of required,as
R5362 T7725 T7723 arg2Of binding,for
R5363 T7725 T7724 arg1Of binding,the
R5373 T7728 T7727 arg2Of shown,as
R5374 T7728 T7729 arg1Of shown,in
R5375 T7732 T7729 arg2Of assay,in
R5391 T7732 T7730 arg1Of assay,the
R5392 T7732 T7731 arg1Of assay,competition
R5393 T7732 T7733 arg1Of assay,(
R5394 T7735 T7733 arg2Of 3E,(
R5403 T7735 T7734 arg1Of 3E,Figure
R5404 T7736 T7733 arg3Of ),(
R5405 T7737 T7738 arg1Of Ablation,of
R5406 T7737 T7748 arg1Of Ablation,abolish

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T7235 200-217 Anaphor denotes this DNA sequence

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7260 177-181 Protein denotes Sox6
T7259 168-170 Protein denotes ɛy
T7258 149-158 Protein denotes β globins

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7979 407-411 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7978 269-273 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7977 177-181 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T7168 151-158 http://purl.obolibrary.org/obo/GO_0005344 denotes globins

GO-MF

Id Subject Object Predicate Lexical cue
T7289 151-158 http://purl.obolibrary.org/obo/GO_0005344 denotes globins
T7281 542-549 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7280 412-419 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7279 326-333 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7278 274-281 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T7298 225-230 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7297 92-97 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7296 32-37 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T7157 492-550 Sentence denotes The M2 mutant probe may compete partially with WT binding.
T7156 382-491 Sentence denotes Ablation of putative Sox/Sox6 binding sites (M1 and M3) abolish their ability to compete in EMSA (Figure 3E).
T7155 244-381 Sentence denotes The intact consensus Sox/Sox6 binding sites of the DNA probe are required for the binding, as shown in the competition assay (Figure 3E).
T7154 177-243 Sentence denotes Sox6 directly binds to this DNA sequence in MEL cells (Figure 3D).
T7153 88-176 Sentence denotes MEL cells, a murine erythroleukemic cell line, express adult β globins, but not ɛy [33].
T7152 0-87 Sentence denotes Next, nuclear extracts from MEL cells were used in EMSA employing the same 36-bp probe.
T128 0-87 Sentence denotes Next, nuclear extracts from MEL cells were used in EMSA employing the same 36-bp probe.
T129 88-176 Sentence denotes MEL cells, a murine erythroleukemic cell line, express adult β globins, but not ɛy [33].
T130 177-243 Sentence denotes Sox6 directly binds to this DNA sequence in MEL cells (Figure 3D).
T131 244-381 Sentence denotes The intact consensus Sox/Sox6 binding sites of the DNA probe are required for the binding, as shown in the competition assay (Figure 3E).
T132 382-491 Sentence denotes Ablation of putative Sox/Sox6 binding sites (M1 and M3) abolish their ability to compete in EMSA (Figure 3E).
T133 492-550 Sentence denotes The M2 mutant probe may compete partially with WT binding.

simple1

Id Subject Object Predicate Lexical cue
T7418 177-181 Protein denotes Sox6
T7417 168-170 Protein denotes ɛy
T7416 149-158 Protein denotes β globins

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T8903 191-196 Binding denotes binds
T8902 135-142 Gene_expression denotes express
T8880 177-181 Protein denotes Sox6
T8879 168-170 Protein denotes ɛy
T8878 149-158 Protein denotes β globins
R6211 T8878 T8902 themeOf β globins,express
R6212 T8880 T8903 themeOf Sox6,binds

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8033 191-196 Binding denotes binds
T8032 135-142 Gene_expression denotes express
T8011 177-181 Protein denotes Sox6
T8010 168-170 Protein denotes ɛy
T8009 149-158 Protein denotes β globins
R5551 T8010 T8032 themeOf ɛy,express
R5552 T8011 T8033 themeOf Sox6,binds

DLUT931

Id Subject Object Predicate Lexical cue
T8085 191-196 Binding denotes binds
T8084 135-142 Gene_expression denotes express
T8060 177-181 Protein denotes Sox6
T8059 168-170 Protein denotes ɛy
T8058 149-158 Protein denotes β globins
R5568 T8058 T8084 themeOf β globins,express
R5569 T8059 T8084 themeOf ɛy,express
R5570 T8060 T8085 themeOf Sox6,binds

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8858 394-445 Binding denotes putative Sox/Sox6 binding sites (M1 and M3) abolish
T8855 244-304 Binding denotes The intact consensus Sox/Sox6 binding sites of the DNA probe
T8853 177-242 Binding denotes Sox6 directly binds to this DNA sequence in MEL cells (Figure 3D)
T8848 534-549 Binding denotes with WT binding
T8840 282-287 Entity denotes sites
T8838 427-429 Entity denotes M1
T8832 403-411 Protein denotes Sox/Sox6
T8827 407-411 Protein denotes Sox6
T8824 168-175 Protein denotes ɛy [33]
T8823 420-437 Entity denotes sites (M1 and M3)
T8820 347-380 Entity denotes the competition assay (Figure 3E)
T8816 205-208 Entity denotes DNA
T8796 291-304 Entity denotes the DNA probe
T8795 244-304 Protein denotes The intact consensus Sox/Sox6 binding sites of the DNA probe
T8777 143-175 Protein denotes adult β globins, but not ɛy [33]
T8774 177-181 Protein denotes Sox6
T8772 496-498 Entity denotes M2
T8757 403-411 Protein denotes Sox/Sox6
R6170 T8757 T8858 themeOf Sox/Sox6,putative Sox/Sox6 binding sites (M1 and M3) abolish
R6181 T8774 T8853 themeOf Sox6,Sox6 directly binds to this DNA sequence in MEL cells (Figure 3D)
R6192 T8795 T8855 themeOf The intact consensus Sox/Sox6 binding sites of the DNA probe,The intact consensus Sox/Sox6 binding sites of the DNA probe

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8492 549-550 . denotes .
T8491 542-549 JJ denotes binding
T8490 539-541 NNP denotes WT
T8489 534-538 IN denotes with
T8488 524-533 RB denotes partially
T8487 516-523 VB denotes compete
T8486 512-515 MD denotes may
T8411 164-167 RB denotes not
T8410 160-163 CC denotes but
T8409 158-159 , denotes ,
T8408 151-158 NNS denotes globins
T8407 149-150 NN denotes β
T8406 143-148 NN denotes adult
T8405 135-142 JJ denotes express
T8404 133-134 , denotes ,
T8403 129-133 NN denotes line
T8402 124-128 NN denotes cell
T8401 108-123 JJ denotes erythroleukemic
T8400 101-107 JJ denotes murine
T8399 99-100 DT denotes a
T8398 97-98 , denotes ,
T8397 92-97 NNS denotes cells
T8396 88-91 NNP denotes MEL
T8395 86-87 . denotes .
T8394 81-86 NN denotes probe
T8393 75-80 JJ denotes 36-bp
T8392 70-74 JJ denotes same
T8391 66-69 DT denotes the
T8390 56-65 VBG denotes employing
T8389 51-55 NNP denotes EMSA
T8388 48-50 IN denotes in
T8387 43-47 VBN denotes used
T8386 38-42 VBD denotes were
T8385 32-37 NNS denotes cells
T8384 28-31 NNP denotes MEL
T8383 23-27 IN denotes from
T8382 14-22 NNS denotes extracts
T8381 6-13 JJ denotes nuclear
T8380 4-5 , denotes ,
T8379 0-4 JJ denotes Next
T8485 506-511 NN denotes probe
T8484 499-505 JJ denotes mutant
T8483 496-498 NNP denotes M2
T8482 492-495 DT denotes The
T8481 490-491 . denotes .
T8480 489-490 -RRB- denotes )
T8479 487-489 NNP denotes 3E
T8478 480-486 NNP denotes Figure
T8477 479-480 -LRB- denotes (
T8476 474-478 NNP denotes EMSA
T8475 471-473 IN denotes in
T8474 463-470 VB denotes compete
T8473 460-462 TO denotes to
T8472 452-459 NN denotes ability
T8471 446-451 PRP$ denotes their
T8470 438-445 VBP denotes abolish
T8469 436-437 -RRB- denotes )
T8468 434-436 CD denotes M3
T8467 430-433 CC denotes and
T8466 427-429 CD denotes M1
T8465 426-427 -LRB- denotes (
T8464 420-425 NNS denotes sites
T8463 412-419 JJ denotes binding
T8462 403-411 NNP denotes Sox/Sox6
T8461 394-402 JJ denotes putative
T8460 391-393 IN denotes of
T8459 382-390 NNP denotes Ablation
T8458 380-381 . denotes .
T8457 379-380 -RRB- denotes )
T8456 377-379 CD denotes 3E
T8455 370-376 NN denotes Figure
T8454 369-370 -LRB- denotes (
T8453 363-368 NN denotes assay
T8452 351-362 NN denotes competition
T8451 347-350 DT denotes the
T8450 344-346 IN denotes in
T8449 338-343 VBN denotes shown
T8448 335-337 IN denotes as
T8447 333-334 , denotes ,
T8446 326-333 JJ denotes binding
T8445 322-325 DT denotes the
T8444 318-321 IN denotes for
T8443 309-317 VBN denotes required
T8442 305-308 VBP denotes are
T8441 299-304 NN denotes probe
T8440 295-298 NNP denotes DNA
T8439 291-294 DT denotes the
T8438 288-290 IN denotes of
T8437 282-287 NNS denotes sites
T8436 274-281 JJ denotes binding
T8435 265-273 NNP denotes Sox/Sox6
T8434 255-264 NN denotes consensus
T8433 248-254 JJ denotes intact
T8432 244-247 DT denotes The
T8431 242-243 . denotes .
T8430 241-242 -RRB- denotes )
T8429 239-241 CD denotes 3D
T8428 232-238 NN denotes Figure
T8427 231-232 -LRB- denotes (
T8426 225-230 NNS denotes cells
T8425 221-224 NNP denotes MEL
T8424 218-220 IN denotes in
T8423 209-217 NN denotes sequence
T8422 205-208 NN denotes DNA
T8421 200-204 DT denotes this
T8420 197-199 TO denotes to
T8419 191-196 VBZ denotes binds
T8418 182-190 RB denotes directly
T8417 177-181 JJ denotes Sox6
T8416 175-176 . denotes .
T8415 174-175 NNP denotes ]
T8414 172-174 CD denotes 33
T8413 171-172 NNP denotes [
T8412 168-170 VB denotes ɛy
R5800 T8379 T8382 advmod Next,extracts
R5801 T8380 T8382 punct ",",extracts
R5803 T8381 T8382 amod nuclear,extracts
R5804 T8382 T8387 nsubjpass extracts,used
R5805 T8383 T8382 prep from,extracts
R5806 T8384 T8385 compound MEL,cells
R5807 T8385 T8383 pobj cells,from
R5808 T8386 T8387 auxpass were,used
R5809 T8387 T8387 ROOT used,used
R5811 T8388 T8387 prep in,used
R5812 T8389 T8388 pobj EMSA,in
R5813 T8390 T8387 advcl employing,used
R5815 T8391 T8394 det the,probe
R5816 T8392 T8394 amod same,probe
R5817 T8393 T8394 amod 36-bp,probe
R5819 T8394 T8390 dobj probe,employing
R5820 T8395 T8387 punct .,used
R5821 T8396 T8397 compound MEL,cells
R5823 T8397 T8397 ROOT cells,cells
R5824 T8398 T8397 punct ",",cells
R5825 T8399 T8403 det a,line
R5827 T8400 T8403 amod murine,line
R5828 T8401 T8402 compound erythroleukemic,cell
R5829 T8402 T8403 compound cell,line
R5831 T8403 T8397 appos line,cells
R5832 T8404 T8403 punct ",",line
R5833 T8405 T8408 amod express,globins
R5835 T8406 T8408 compound adult,globins
R5836 T8407 T8408 compound β,globins
R5837 T8408 T8403 conj globins,line
R5839 T8409 T8408 punct ",",globins
R5840 T8410 T8408 cc but,globins
R5841 T8411 T8412 neg not,ɛy
R5843 T8412 T8408 conj ɛy,globins
R5844 T8413 T8415 nmod [,]
R5845 T8414 T8415 nummod 33,]
R5847 T8415 T8415 ROOT ],]
R5848 T8416 T8415 punct .,]
R5849 T8417 T8419 amod Sox6,binds
R5851 T8418 T8419 advmod directly,binds
R5852 T8419 T8419 ROOT binds,binds
R5853 T8420 T8419 prep to,binds
R5855 T8421 T8423 det this,sequence
R5856 T8422 T8423 compound DNA,sequence
R5857 T8423 T8420 pobj sequence,to
R5860 T8424 T8423 prep in,sequence
R5863 T8425 T8426 compound MEL,cells
R5865 T8426 T8424 pobj cells,in
R5867 T8427 T8428 punct (,Figure
R5868 T8428 T8426 appos Figure,cells
R5870 T8429 T8428 nummod 3D,Figure
R5871 T8430 T8428 punct ),Figure
R5872 T8431 T8419 punct .,binds
R5874 T8432 T8434 det The,consensus
R5875 T8433 T8434 amod intact,consensus
R5876 T8434 T8434 ROOT consensus,consensus
R5878 T8435 T8434 appos Sox/Sox6,consensus
R5880 T8436 T8437 amod binding,sites
R5882 T8437 T8443 nsubjpass sites,required
R5883 T8438 T8437 prep of,sites
R5885 T8439 T8441 det the,probe
R5886 T8440 T8441 compound DNA,probe
R5888 T8441 T8438 pobj probe,of
R5889 T8442 T8443 auxpass are,required
R5890 T8443 T8434 relcl required,consensus
R5892 T8444 T8443 prep for,required
R5893 T8445 T8446 det the,binding
R5895 T8446 T8444 pobj binding,for
R5896 T8447 T8443 punct ",",required
R5898 T8448 T8449 mark as,shown
R5899 T8449 T8443 advcl shown,required
R5900 T8450 T8449 prep in,shown
R5902 T8451 T8453 det the,assay
R5903 T8452 T8453 compound competition,assay
R5905 T8453 T8450 pobj assay,in
R5906 T8454 T8455 punct (,Figure
R5907 T8455 T8453 appos Figure,assay
R5908 T8456 T8455 nummod 3E,Figure
R5909 T8457 T8455 punct ),Figure
R5910 T8458 T8443 punct .,required
R5911 T8459 T8470 nsubj Ablation,abolish
R5913 T8460 T8459 prep of,Ablation
R5914 T8461 T8464 amod putative,sites
R5915 T8462 T8464 nmod Sox/Sox6,sites
R5917 T8463 T8464 amod binding,sites
R5918 T8464 T8460 pobj sites,of
R5920 T8465 T8464 punct (,sites
R5921 T8466 T8464 appos M1,sites
R5922 T8467 T8466 cc and,M1
R5923 T8468 T8466 conj M3,M1
R5925 T8469 T8464 punct ),sites
R5926 T8470 T8470 ROOT abolish,abolish
R5928 T8471 T8472 poss their,ability
R5929 T8472 T8470 dobj ability,abolish
R5930 T8473 T8474 aux to,compete
R5932 T8474 T8472 acl compete,ability
R5933 T8475 T8474 prep in,compete
R5934 T8476 T8475 pobj EMSA,in
R5936 T8477 T8479 punct (,3E
R5937 T8478 T8479 compound Figure,3E
R5938 T8479 T8476 appos 3E,EMSA
R5940 T8480 T8479 punct ),3E
R5941 T8481 T8470 punct .,abolish
R5942 T8482 T8485 det The,probe
R5944 T8483 T8485 compound M2,probe
R5945 T8484 T8485 amod mutant,probe
R5946 T8485 T8487 nsubj probe,compete
R5948 T8486 T8487 aux may,compete
R5949 T8487 T8487 ROOT compete,compete
R5950 T8488 T8487 advmod partially,compete
R5952 T8489 T8487 prep with,compete
R5953 T8490 T8489 pobj WT,with
R5954 T8491 T8487 advcl binding,compete
R5956 T8492 T8487 punct .,compete

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7371 403-406 Protein denotes Sox
T7370 309-317 Positive_regulation denotes required
T7369 309-317 Positive_regulation denotes required
T7368 326-333 Binding denotes binding
T7367 326-333 Binding denotes binding
T7366 269-273 Protein denotes Sox6
T7365 265-268 Protein denotes Sox
T7364 191-196 Binding denotes binds
T7363 177-181 Protein denotes Sox6
T7362 135-142 Gene_expression denotes express
T7361 143-158 Protein denotes adult β globins
T7378 542-549 Binding denotes binding
T7377 539-541 Protein denotes WT
T7376 438-445 Negative_regulation denotes abolish
T7375 438-445 Negative_regulation denotes abolish
T7374 463-470 Binding denotes compete
T7373 463-470 Binding denotes compete
T7372 407-411 Protein denotes Sox6
R4988 T7361 T7362 themeOf adult β globins,express
R4989 T7363 T7364 themeOf Sox6,binds
R4990 T7365 T7367 themeOf Sox,binding
R4991 T7366 T7368 themeOf Sox6,binding
R4992 T7367 T7369 themeOf binding,required
R4993 T7368 T7370 themeOf binding,required
R4994 T7371 T7373 themeOf Sox,compete
R4995 T7372 T7374 themeOf Sox6,compete
R4996 T7373 T7375 themeOf compete,abolish
R4997 T7374 T7376 themeOf compete,abolish
R4998 T7377 T7378 themeOf WT,binding

testone

Id Subject Object Predicate Lexical cue
T7052 542-549 Binding denotes binding
T7051 326-333 Binding denotes binding
T7050 309-317 Positive_regulation denotes required
T7049 191-196 Binding denotes binds
T7048 135-142 Gene_expression denotes express
T7023 177-181 Protein denotes Sox6
T7022 168-170 Protein denotes ɛy
T7021 149-158 Protein denotes β globins
R4904 T7021 T7048 themeOf β globins,express
R4905 T7022 T7048 themeOf ɛy,express
R4906 T7023 T7049 themeOf Sox6,binds
R4912 T7051 T7050 themeOf binding,required

test3

Id Subject Object Predicate Lexical cue
T7121 191-196 Binding denotes binds
T7120 177-181 Protein denotes Sox6
T7119 168-170 Protein denotes ɛy
T7118 149-158 Protein denotes β globins
T7079 177-181 Protein denotes Sox6
T7078 168-170 Protein denotes ɛy
T7077 149-158 Protein denotes β globins
R4930 T7120 T7121 themeOf Sox6,binds