> top > docs > PMC:1359074 > spans > 16911-18146 > annotations

PMC:1359074 / 16911-18146 JSONTXT

Annnotations TAB JSON ListView MergeView

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7660 1233-1234 -RRB- denotes )
T7659 1231-1233 NN denotes 3C
T7658 1224-1230 NN denotes Figure
T7657 1223-1224 -LRB- denotes (
T7656 1215-1222 NN denotes results
T7655 1209-1214 DT denotes these
T7654 1199-1208 VB denotes confirmed
T7653 1194-1198 WDT denotes that
T7652 1189-1193 NN denotes EMSA
T7651 1181-1188 DT denotes another
T7650 1178-1180 IN denotes in
T7649 1173-1177 VB denotes used
T7648 1169-1172 VB denotes was
T7647 1164-1168 NN denotes Sox6
T7646 1154-1163 JJ denotes HA-tagged
T7645 1151-1153 DT denotes an
T7644 1149-1150 -COMMA- denotes ,
T7643 1144-1149 NN denotes probe
T7642 1140-1143 DT denotes the
T7641 1137-1139 TO denotes to
T7640 1131-1136 VB denotes binds
T7639 1124-1130 PRP denotes itself
T7638 1120-1123 NN denotes tag
T7637 1114-1119 NN denotes c-Myc
T7636 1110-1113 DT denotes the
T7635 1105-1109 IN denotes that
T7634 1093-1104 NN denotes possibility
T7633 1089-1092 DT denotes the
T7632 1085-1088 RP denotes out
T7631 1080-1084 VB denotes rule
T7630 1077-1079 TO denotes To
T7629 1062-1075 JJ denotes Sox6-specific
T7628 1059-1061 VB denotes is
T7627 1051-1058 NN denotes binding
T7626 1047-1050 DT denotes the
T7625 1042-1046 IN denotes that
T7624 1031-1041 VB denotes indicating
T7623 1029-1030 -COMMA- denotes ,
T7622 1025-1029 NN denotes band
T7621 1021-1024 DT denotes the
T7620 1010-1020 VB denotes supershift
T7619 999-1009 NN denotes antibodies
T7618 994-998 NN denotes Sox6
T7617 990-993 CC denotes and
T7616 984-989 NN denotes c-Myc
T7615 979-983 CC denotes both
T7614 977-978 -COMMA- denotes ,
T7613 969-977 RB denotes Moreover
T7612 960-967 NN denotes protein
T7611 955-959 NN denotes Sox6
T7610 948-954 VB denotes tagged
T7609 944-947 DT denotes the
T7608 941-943 IN denotes by
T7607 933-940 VB denotes shifted
T7606 929-932 VB denotes was
T7605 923-928 NN denotes probe
T7604 917-922 JJ denotes 36-bp
T7603 913-916 DT denotes The
T7602 910-911 -RRB- denotes )
T7601 908-910 NN denotes 2C
T7600 901-907 NN denotes Figure
T7599 900-901 -LRB- denotes (
T7598 888-899 NN denotes experiments
T7597 879-887 NN denotes analysis
T7596 870-878 NN denotes deletion
T7595 866-869 DT denotes the
T7594 863-865 IN denotes by
T7593 855-862 VB denotes defined
T7592 846-854 NN denotes promoter
T7591 843-845 JJ denotes ɛy
T7590 839-842 DT denotes the
T7589 832-838 IN denotes within
T7588 830-831 -RRB- denotes )
T7587 828-830 NN denotes 3B
T7586 821-827 NN denotes Figure
T7585 820-821 -LRB- denotes (
T7584 813-819 NN denotes region
T7583 807-812 JJ denotes 36-bp
T7582 803-806 DT denotes the
T7581 798-802 IN denotes with
T7580 788-797 VB denotes associate
T7579 777-787 RB denotes physically
T7578 774-776 TO denotes to
T7577 769-773 JJ denotes able
T7576 766-768 VB denotes is
T7575 761-765 NN denotes Sox6
T7574 758-759 -RRB- denotes )
T7573 756-758 NN denotes 3A
T7572 749-755 NN denotes Figure
T7571 748-749 -LRB- denotes (
T7570 742-747 NN denotes sites
T7569 734-741 NN denotes binding
T7568 725-733 NN denotes Sox/Sox6
T7567 722-724 IN denotes in
T7566 720-721 -RRB- denotes )
T7565 718-720 NN denotes M3
T7564 714-717 CC denotes and
T7563 711-713 NN denotes M2
T7562 710-711 -LRB- denotes (
T7561 702-709 VB denotes mutated
T7560 699-701 CC denotes or
T7559 697-698 -COMMA- denotes ,
T7558 696-697 -RRB- denotes )
T7557 694-696 NN denotes M1
T7556 693-694 -LRB- denotes (
T7555 683-692 VB denotes truncated
T7554 676-682 CC denotes either
T7553 674-675 -COMMA- denotes ,
T7552 671-674 VB denotes are
T7551 666-670 WDT denotes that
T7550 659-665 NN denotes probes
T7549 651-658 VB denotes mutated
T7548 645-650 CD denotes three
T7547 641-644 VB denotes are
T7546 636-640 NN denotes EMSA
T7545 632-635 PRP-DOLLAR- denotes our
T7544 629-631 IN denotes in
T7543 620-628 VB denotes included
T7542 615-619 RB denotes Also
T7541 608-613 NN denotes sites
T7540 600-607 NN denotes binding
T7539 591-599 NN denotes Sox/Sox6
T7538 581-590 NN denotes consensus
T7537 577-580 CD denotes two
T7536 568-576 VB denotes contains
T7535 562-567 NN denotes probe
T7534 557-561 DT denotes This
T7533 547-555 NN denotes analyses
T7532 538-546 NN denotes deletion
T7531 529-537 NN denotes promoter
T7530 525-528 PRP-DOLLAR- denotes our
T7529 522-524 IN denotes in
T7528 514-521 VB denotes defined
T7527 505-513 NN denotes promoter
T7526 502-504 JJ denotes ɛy
T7525 498-501 DT denotes the
T7524 495-497 IN denotes of
T7523 488-494 NN denotes region
T7522 479-487 JJ denotes critical
T7521 475-478 DT denotes the
T7520 472-474 TO denotes to
T7519 460-471 VB denotes corresponds
T7518 454-459 NN denotes probe
T7517 451-453 NN denotes WT
T7516 449-450 -RRB- denotes )
T7515 447-449 NN denotes bp
T7514 446-447 -LRB- denotes (
T7513 441-445 NN denotes pair
T7512 433-440 NN denotes 36–base
T7511 429-432 DT denotes The
T7510 425-427 NN denotes 3A
T7509 418-424 NN denotes Figure
T7508 415-417 IN denotes in
T7507 408-414 VB denotes listed
T7506 404-407 VB denotes are
T7505 399-403 VB denotes used
T7504 392-398 NN denotes probes
T7503 388-391 DT denotes The
T7502 380-386 NN denotes system
T7501 374-379 FW denotes vitro
T7500 371-373 FW denotes in
T7499 345-370 NN denotes transcription/translation
T7498 332-344 JJ denotes lysate-based
T7497 319-331 NN denotes reticulocyte
T7466 134-137 DT denotes the
T7496 317-318 DT denotes a
T7495 314-316 IN denotes in
T7494 309-313 NN denotes Sox6
T7493 296-308 JJ denotes c-Myc-tagged
T7492 294-295 DT denotes a
T7491 288-293 VB denotes using
T7490 286-287 -RRB- denotes )
T7489 282-286 NN denotes EMSA
T7488 281-282 -LRB- denotes (
T7487 274-280 NN denotes assays
T7486 268-273 NN denotes shift
T7485 259-267 NN denotes mobility
T7484 243-258 JJ denotes electrophoretic
T7483 233-242 VB denotes performed
T7482 227-232 RB denotes first
T7481 224-226 PRP denotes we
T7480 222-223 -COMMA- denotes ,
T7479 214-222 NN denotes promoter
T7478 211-213 JJ denotes ɛy
T7477 207-210 DT denotes the
T7476 202-206 IN denotes with
T7475 191-201 VB denotes associated
T7474 182-190 RB denotes directly
T7473 179-181 VB denotes is
T7472 174-178 NN denotes Sox6
T7471 166-173 IN denotes whether
T7470 154-165 VB denotes investigate
T7469 151-153 TO denotes To
T7468 141-149 NN denotes promoter
T7467 138-140 JJ denotes ɛy
T7465 124-133 VB denotes affecting
T7464 110-123 NN denotes intermediates
T7463 99-109 VB denotes regulating
T7462 96-98 IN denotes by
T7461 93-95 CC denotes or
T7460 84-92 NN denotes promoter
T7459 80-83 DT denotes the
T7458 75-79 IN denotes with
T7457 67-74 NN denotes contact
T7456 58-66 JJ denotes physical
T7455 51-57 JJ denotes direct
T7454 43-50 IN denotes through
T7453 36-42 CC denotes either
T7452 34-35 -COMMA- denotes ,
T7451 26-34 NN denotes promoter
T7450 23-25 JJ denotes ɛy
T7449 19-22 DT denotes the
T7448 11-18 VB denotes repress
T7447 5-10 MD denotes might
T7446 0-4 NN denotes Sox6
R5014 T7446 T7447 arg1Of Sox6,might
R5015 T7446 T7448 arg1Of Sox6,repress
R5016 T7446 T7463 arg1Of Sox6,regulating
R5017 T7448 T7447 arg2Of repress,might
R5018 T7448 T7452 arg1Of repress,","
R5019 T7448 T7454 arg1Of repress,through
R5020 T7448 T7462 arg1Of repress,by
R5021 T7451 T7448 arg2Of promoter,repress
R5022 T7451 T7449 arg1Of promoter,the
R5023 T7451 T7450 arg1Of promoter,ɛy
R5024 T7454 T7461 arg1Of through,or
R5025 T7457 T7454 arg2Of contact,through
R5026 T7457 T7455 arg1Of contact,direct
R5027 T7457 T7456 arg1Of contact,physical
R5028 T7457 T7458 arg1Of contact,with
R5029 T7460 T7458 arg2Of promoter,with
R5030 T7460 T7459 arg1Of promoter,the
R5031 T7461 T7453 arg1Of or,either
R5032 T7462 T7461 arg2Of by,or
R5033 T7463 T7462 arg2Of regulating,by
R5034 T7464 T7463 arg2Of intermediates,regulating
R5035 T7464 T7465 arg1Of intermediates,affecting
R5036 T7468 T7465 arg2Of promoter,affecting
R5037 T7468 T7466 arg1Of promoter,the
R5038 T7468 T7467 arg1Of promoter,ɛy
R5039 T7470 T7469 arg1Of investigate,To
R5040 T7472 T7473 arg1Of Sox6,is
R5041 T7472 T7475 arg2Of Sox6,associated
R5042 T7475 T7470 arg2Of associated,investigate
R5043 T7475 T7471 arg1Of associated,whether
R5044 T7475 T7473 arg2Of associated,is
R5045 T7475 T7474 arg1Of associated,directly
R5046 T7475 T7476 arg1Of associated,with
R5047 T7479 T7476 arg2Of promoter,with
R5048 T7479 T7477 arg1Of promoter,the
R5049 T7479 T7478 arg1Of promoter,ɛy
R5050 T7481 T7470 arg1Of we,investigate
R5051 T7481 T7483 arg1Of we,performed
R5052 T7481 T7491 arg1Of we,using
R5053 T7483 T7469 modOf performed,To
R5054 T7483 T7480 arg1Of performed,","
R5055 T7483 T7482 arg1Of performed,first
R5056 T7483 T7491 modOf performed,using
R5057 T7487 T7483 arg2Of assays,performed
R5058 T7487 T7484 arg1Of assays,electrophoretic
R5059 T7487 T7485 arg1Of assays,mobility
R5060 T7487 T7486 arg1Of assays,shift
R5061 T7487 T7488 arg1Of assays,(
R5062 T7489 T7488 arg2Of EMSA,(
R5063 T7490 T7488 arg3Of ),(
R5064 T7494 T7491 arg2Of Sox6,using
R5065 T7494 T7492 arg1Of Sox6,a
R5066 T7494 T7493 arg1Of Sox6,c-Myc-tagged
R5067 T7494 T7495 arg1Of Sox6,in
R5068 T7501 T7500 arg1Of vitro,in
R5069 T7502 T7495 arg2Of system,in
R5070 T7502 T7496 arg1Of system,a
R5071 T7502 T7497 arg1Of system,reticulocyte
R5072 T7502 T7498 arg1Of system,lysate-based
R5073 T7502 T7499 arg1Of system,transcription/translation
R5074 T7502 T7501 arg1Of system,vitro
R5075 T7504 T7503 arg1Of probes,The
R5076 T7504 T7505 arg2Of probes,used
R5077 T7504 T7506 arg1Of probes,are
R5078 T7504 T7507 arg2Of probes,listed
R5079 T7507 T7506 arg2Of listed,are
R5080 T7507 T7508 arg1Of listed,in
R5081 T7510 T7508 arg2Of 3A,in
R5082 T7510 T7509 arg1Of 3A,Figure
R5083 T7513 T7512 arg1Of pair,36–base
R5084 T7513 T7514 arg1Of pair,(
R5085 T7515 T7514 arg2Of bp,(
R5086 T7516 T7514 arg3Of ),(
R5087 T7518 T7511 arg1Of probe,The
R5088 T7518 T7513 arg1Of probe,pair
R5089 T7518 T7517 arg1Of probe,WT
R5090 T7518 T7519 arg1Of probe,corresponds
R5091 T7519 T7520 arg1Of corresponds,to
R5092 T7523 T7520 arg2Of region,to
R5093 T7523 T7521 arg1Of region,the
R5094 T7523 T7522 arg1Of region,critical
R5095 T7523 T7524 arg1Of region,of
R5096 T7527 T7524 arg2Of promoter,of
R5097 T7527 T7525 arg1Of promoter,the
R5098 T7527 T7526 arg1Of promoter,ɛy
R5099 T7527 T7528 arg2Of promoter,defined
R5100 T7528 T7529 arg1Of defined,in
R5101 T7533 T7529 arg2Of analyses,in
R5102 T7533 T7530 arg1Of analyses,our
R5103 T7533 T7531 arg1Of analyses,promoter
R5104 T7533 T7532 arg1Of analyses,deletion
R5105 T7535 T7534 arg1Of probe,This
R5106 T7535 T7536 arg1Of probe,contains
R5107 T7541 T7536 arg2Of sites,contains
R5108 T7541 T7537 arg1Of sites,two
R5109 T7541 T7538 arg1Of sites,consensus
R5110 T7541 T7539 arg1Of sites,Sox/Sox6
R5111 T7541 T7540 arg1Of sites,binding
R5112 T7543 T7542 arg1Of included,Also
R5113 T7543 T7544 arg1Of included,in
R5114 T7543 T7547 arg2Of included,are
R5115 T7643 T7641 arg2Of probe,to
R5116 T7643 T7642 arg1Of probe,the
R5117 T7647 T7645 arg1Of Sox6,an
R5118 T7647 T7646 arg1Of Sox6,HA-tagged
R5119 T7647 T7648 arg1Of Sox6,was
R5120 T7647 T7649 arg2Of Sox6,used
R5121 T7649 T7630 modOf used,To
R5122 T7649 T7644 arg1Of used,","
R5123 T7649 T7648 arg2Of used,was
R5124 T7649 T7650 arg1Of used,in
R5125 T7652 T7650 arg2Of EMSA,in
R5126 T7652 T7651 arg1Of EMSA,another
R5127 T7652 T7653 arg1Of EMSA,that
R5128 T7652 T7654 arg1Of EMSA,confirmed
R5129 T7656 T7654 arg2Of results,confirmed
R5130 T7656 T7655 arg1Of results,these
R5131 T7656 T7657 arg1Of results,(
R5132 T7659 T7657 arg2Of 3C,(
R5133 T7659 T7658 arg1Of 3C,Figure
R5134 T7660 T7657 arg3Of ),(
R5136 T7546 T7544 arg2Of EMSA,in
R5137 T7546 T7545 arg1Of EMSA,our
R5141 T7550 T7543 arg2Of probes,included
R5142 T7550 T7547 arg1Of probes,are
R5143 T7550 T7548 arg1Of probes,three
R5144 T7550 T7549 arg2Of probes,mutated
R5145 T7550 T7551 arg1Of probes,that
R5146 T7550 T7552 arg1Of probes,are
R5148 T7552 T7553 arg1Of are,","
R5149 T7552 T7554 arg1Of are,either
R5150 T7555 T7556 arg1Of truncated,(
R5151 T7555 T7560 arg1Of truncated,or
R5152 T7557 T7556 arg2Of M1,(
R5153 T7558 T7556 arg3Of ),(
R5154 T7560 T7552 arg2Of or,are
R5155 T7560 T7559 arg1Of or,","
R5156 T7560 T7567 arg1Of or,in
R5158 T7563 T7564 arg1Of M2,and
R5160 T7564 T7560 arg2Of and,or
R5161 T7564 T7561 arg1Of and,mutated
R5162 T7564 T7562 arg2Of and,(
R5163 T7565 T7564 arg2Of M3,and
R5164 T7566 T7562 arg3Of ),(
R5168 T7570 T7567 arg2Of sites,in
R5169 T7570 T7568 arg1Of sites,Sox/Sox6
R5170 T7570 T7569 arg1Of sites,binding
R5171 T7570 T7571 arg1Of sites,(
R5173 T7573 T7571 arg2Of 3A,(
R5174 T7573 T7572 arg1Of 3A,Figure
R5175 T7574 T7571 arg3Of ),(
R5176 T7575 T7576 arg1Of Sox6,is
R5177 T7575 T7577 arg1Of Sox6,able
R5178 T7575 T7580 arg1Of Sox6,associate
R5180 T7577 T7576 arg2Of able,is
R5182 T7580 T7577 arg2Of associate,able
R5183 T7580 T7578 arg1Of associate,to
R5184 T7580 T7579 arg1Of associate,physically
R5185 T7580 T7581 arg1Of associate,with
R5186 T7584 T7581 arg2Of region,with
R5187 T7584 T7582 arg1Of region,the
R5188 T7584 T7583 arg1Of region,36-bp
R5189 T7584 T7585 arg1Of region,(
R5190 T7584 T7589 arg1Of region,within
R5192 T7587 T7585 arg2Of 3B,(
R5193 T7587 T7586 arg1Of 3B,Figure
R5195 T7588 T7585 arg3Of ),(
R5198 T7592 T7589 arg2Of promoter,within
R5199 T7592 T7590 arg1Of promoter,the
R5200 T7592 T7591 arg1Of promoter,ɛy
R5201 T7592 T7593 arg2Of promoter,defined
R5202 T7598 T7593 arg1Of experiments,defined
R5203 T7598 T7594 arg2Of experiments,by
R5204 T7598 T7595 arg1Of experiments,the
R5205 T7598 T7596 arg1Of experiments,deletion
R5206 T7598 T7597 arg1Of experiments,analysis
R5207 T7598 T7599 arg1Of experiments,(
R5210 T7601 T7599 arg2Of 2C,(
R5211 T7601 T7600 arg1Of 2C,Figure
R5212 T7602 T7599 arg3Of ),(
R5215 T7605 T7603 arg1Of probe,The
R5216 T7605 T7604 arg1Of probe,36-bp
R5217 T7605 T7606 arg1Of probe,was
R5218 T7605 T7607 arg2Of probe,shifted
R5219 T7607 T7606 arg2Of shifted,was
R5225 T7612 T7607 arg1Of protein,shifted
R5226 T7612 T7608 arg2Of protein,by
R5227 T7612 T7609 arg1Of protein,the
R5228 T7612 T7610 arg2Of protein,tagged
R5229 T7612 T7611 arg1Of protein,Sox6
R5230 T7616 T7617 arg1Of c-Myc,and
R5232 T7617 T7615 arg1Of and,both
R5233 T7618 T7617 arg2Of Sox6,and
R5234 T7619 T7616 arg1Of antibodies,c-Myc
R5235 T7619 T7618 arg1Of antibodies,Sox6
R5236 T7619 T7620 arg1Of antibodies,supershift
R5237 T7620 T7613 arg1Of supershift,Moreover
R5238 T7620 T7614 arg1Of supershift,","
R5239 T7620 T7623 arg1Of supershift,","
R5240 T7620 T7624 modOf supershift,indicating
R5241 T7622 T7620 arg2Of band,supershift
R5242 T7622 T7621 arg1Of band,the
R5246 T7627 T7626 arg1Of binding,the
R5247 T7627 T7628 arg1Of binding,is
R5248 T7627 T7629 arg1Of binding,Sox6-specific
R5249 T7628 T7624 arg2Of is,indicating
R5250 T7628 T7625 arg1Of is,that
R5251 T7629 T7628 arg2Of Sox6-specific,is
R5252 T7631 T7630 arg1Of rule,To
R5253 T7631 T7632 arg1Of rule,out
R5255 T7634 T7631 arg2Of possibility,rule
R5256 T7634 T7633 arg1Of possibility,the
R5259 T7638 T7636 arg1Of tag,the
R5260 T7638 T7637 arg1Of tag,c-Myc
R5261 T7639 T7638 arg1Of itself,tag
R5262 T7639 T7640 arg1Of itself,binds
R5263 T7640 T7634 arg2Of binds,possibility
R5264 T7640 T7635 arg1Of binds,that
R5265 T7640 T7641 arg1Of binds,to

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T7236 807-819 Antecedent denotes 36-bp region

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7257 1164-1168 Protein denotes Sox6
T7256 1154-1156 Protein denotes HA
T7255 1114-1119 Protein denotes c-Myc
T7254 1062-1066 Protein denotes Sox6
T7253 994-998 Protein denotes Sox6
T7252 984-989 Protein denotes c-Myc
T7251 955-959 Protein denotes Sox6
T7250 843-845 Protein denotes ɛy
T7249 761-765 Protein denotes Sox6
T7248 502-504 Protein denotes ɛy
T7247 309-313 Protein denotes Sox6
T7246 296-301 Protein denotes c-Myc
T7245 211-213 Protein denotes ɛy
T7244 174-178 Protein denotes Sox6
T7243 138-140 Protein denotes ɛy
T7242 23-25 Protein denotes ɛy
T7241 0-4 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7974 994-998 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7973 955-959 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7972 761-765 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7971 729-733 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7970 595-599 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7969 309-313 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7968 174-178 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7967 0-4 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7976 1164-1168 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7975 1062-1066 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T7167 359-370 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T7166 345-358 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T7275 600-607 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7286 999-1009 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T7277 1051-1058 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7276 734-741 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T7293 999-1009 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T7290 999-1009 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies

sentences

Id Subject Object Predicate Lexical cue
T7151 1077-1235 Sentence denotes To rule out the possibility that the c-Myc tag itself binds to the probe, an HA-tagged Sox6 was used in another EMSA that confirmed these results (Figure 3C).
T7150 969-1076 Sentence denotes Moreover, both c-Myc and Sox6 antibodies supershift the band, indicating that the binding is Sox6-specific.
T7149 913-968 Sentence denotes The 36-bp probe was shifted by the tagged Sox6 protein.
T7148 761-912 Sentence denotes Sox6 is able to physically associate with the 36-bp region (Figure 3B) within the ɛy promoter defined by the deletion analysis experiments (Figure 2C).
T7147 615-760 Sentence denotes Also included in our EMSA are three mutated probes that are, either truncated (M1), or mutated (M2 and M3) in Sox/Sox6 binding sites (Figure 3A).
T7146 557-614 Sentence denotes This probe contains two consensus Sox/Sox6 binding sites.
T7145 429-556 Sentence denotes The 36–base pair (bp) WT probe corresponds to the critical region of the ɛy promoter defined in our promoter deletion analyses.
T7144 388-428 Sentence denotes The probes used are listed in Figure 3A.
T7143 151-387 Sentence denotes To investigate whether Sox6 is directly associated with the ɛy promoter, we first performed electrophoretic mobility shift assays (EMSA) using a c-Myc-tagged Sox6 in a reticulocyte lysate-based transcription/translation in vitro system.
T7142 0-150 Sentence denotes Sox6 might repress the ɛy promoter, either through direct physical contact with the promoter or by regulating intermediates affecting the ɛy promoter.
T118 0-150 Sentence denotes Sox6 might repress the ɛy promoter, either through direct physical contact with the promoter or by regulating intermediates affecting the ɛy promoter.
T119 151-387 Sentence denotes To investigate whether Sox6 is directly associated with the ɛy promoter, we first performed electrophoretic mobility shift assays (EMSA) using a c-Myc-tagged Sox6 in a reticulocyte lysate-based transcription/translation in vitro system.
T120 388-428 Sentence denotes The probes used are listed in Figure 3A.
T121 429-556 Sentence denotes The 36–base pair (bp) WT probe corresponds to the critical region of the ɛy promoter defined in our promoter deletion analyses.
T122 557-614 Sentence denotes This probe contains two consensus Sox/Sox6 binding sites.
T123 615-760 Sentence denotes Also included in our EMSA are three mutated probes that are, either truncated (M1), or mutated (M2 and M3) in Sox/Sox6 binding sites (Figure 3A).
T124 761-912 Sentence denotes Sox6 is able to physically associate with the 36-bp region (Figure 3B) within the ɛy promoter defined by the deletion analysis experiments (Figure 2C).
T125 913-968 Sentence denotes The 36-bp probe was shifted by the tagged Sox6 protein.
T126 969-1076 Sentence denotes Moreover, both c-Myc and Sox6 antibodies supershift the band, indicating that the binding is Sox6-specific.
T127 1077-1235 Sentence denotes To rule out the possibility that the c-Myc tag itself binds to the probe, an HA-tagged Sox6 was used in another EMSA that confirmed these results (Figure 3C).

simple1

Id Subject Object Predicate Lexical cue
T7415 1164-1168 Protein denotes Sox6
T7414 1154-1156 Protein denotes HA
T7413 1114-1119 Protein denotes c-Myc
T7412 1062-1066 Protein denotes Sox6
T7411 994-998 Protein denotes Sox6
T7410 984-989 Protein denotes c-Myc
T7409 955-959 Protein denotes Sox6
T7408 843-845 Protein denotes ɛy
T7407 761-765 Protein denotes Sox6
T7406 502-504 Protein denotes ɛy
T7405 309-313 Protein denotes Sox6
T7404 296-301 Protein denotes c-Myc
T7403 211-213 Protein denotes ɛy
T7402 174-178 Protein denotes Sox6
T7401 138-140 Protein denotes ɛy
T7400 23-25 Protein denotes ɛy
T7399 0-4 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T8901 1131-1136 Binding denotes binds
T8900 788-797 Binding denotes associate
T8899 191-201 Binding denotes associated
T8898 99-109 Regulation denotes regulating
T8897 124-133 Regulation denotes affecting
T8896 11-18 Negative_regulation denotes repress
T8877 1164-1168 Protein denotes Sox6
T8876 1154-1156 Protein denotes HA
T8875 1114-1119 Protein denotes c-Myc
T8874 1062-1066 Protein denotes Sox6
T8873 994-998 Protein denotes Sox6
T8872 984-989 Protein denotes c-Myc
T8871 955-959 Protein denotes Sox6
T8870 843-845 Protein denotes ɛy
T8869 761-765 Protein denotes Sox6
T8868 502-504 Protein denotes ɛy
T8867 309-313 Protein denotes Sox6
T8866 296-301 Protein denotes c-Myc
T8865 211-213 Protein denotes ɛy
T8864 174-178 Protein denotes Sox6
T8863 138-140 Protein denotes ɛy
T8862 23-25 Protein denotes ɛy
T8861 0-4 Protein denotes Sox6
R6204 T8861 T8898 causeOf Sox6,regulating
R6205 T8862 T8896 themeOf ɛy,repress
R6206 T8863 T8897 themeOf ɛy,affecting
R6207 T8864 T8899 themeOf Sox6,associated
R6208 T8869 T8900 themeOf Sox6,associate
R6209 T8870 T8900 themeOf ɛy,associate
R6210 T8875 T8901 themeOf c-Myc,binds
R6224 T8897 T8898 themeOf affecting,regulating

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8031 1131-1136 Binding denotes binds
T8030 788-797 Binding denotes associate
T8029 191-201 Binding denotes associated
T8028 99-109 Regulation denotes regulating
T8027 124-133 Regulation denotes affecting
T8008 1164-1168 Protein denotes Sox6
T8007 1154-1156 Protein denotes HA
T8006 1114-1119 Protein denotes c-Myc
T8005 1062-1066 Protein denotes Sox6
T8004 994-998 Protein denotes Sox6
T8003 984-989 Protein denotes c-Myc
T8002 955-959 Protein denotes Sox6
T8001 843-845 Protein denotes ɛy
T8000 761-765 Protein denotes Sox6
T7999 502-504 Protein denotes ɛy
T7998 309-313 Protein denotes Sox6
T7997 296-301 Protein denotes c-Myc
T7996 211-213 Protein denotes ɛy
T7995 174-178 Protein denotes Sox6
T7994 138-140 Protein denotes ɛy
T7993 23-25 Protein denotes ɛy
T7992 0-4 Protein denotes Sox6
R5538 T7992 T8028 causeOf Sox6,regulating
R5541 T7994 T8027 themeOf ɛy,affecting
R5543 T8027 T8028 themeOf affecting,regulating
R5544 T7995 T8029 themeOf Sox6,associated
R5546 T8001 T8030 themeOf ɛy,associate
R5548 T8006 T8031 themeOf c-Myc,binds

DLUT931

Id Subject Object Predicate Lexical cue
T8083 1157-1163 Binding denotes tagged
T8082 1131-1136 Binding denotes binds
T8081 1051-1058 Binding denotes binding
T8080 788-797 Binding denotes associate
T8079 191-201 Binding denotes associated
T8078 99-109 Regulation denotes regulating
T8077 124-133 Regulation denotes affecting
T8076 67-74 Binding denotes contact
T8057 1164-1168 Protein denotes Sox6
T8056 1154-1156 Protein denotes HA
T8055 1114-1119 Protein denotes c-Myc
T8054 1062-1066 Protein denotes Sox6
T8053 994-998 Protein denotes Sox6
T8052 984-989 Protein denotes c-Myc
T8051 955-959 Protein denotes Sox6
T8050 843-845 Protein denotes ɛy
T8049 761-765 Protein denotes Sox6
T8048 502-504 Protein denotes ɛy
T8047 309-313 Protein denotes Sox6
T8046 296-301 Protein denotes c-Myc
T8045 211-213 Protein denotes ɛy
T8044 174-178 Protein denotes Sox6
T8043 138-140 Protein denotes ɛy
T8042 23-25 Protein denotes ɛy
T8041 0-4 Protein denotes Sox6
R5550 T8042 T8076 themeOf ɛy,contact
R5553 T8043 T8077 themeOf ɛy,affecting
R5555 T8044 T8079 themeOf Sox6,associated
R5557 T8045 T8079 themeOf ɛy,associated
R5559 T8049 T8080 themeOf Sox6,associate
R5561 T8050 T8080 themeOf ɛy,associate
R5563 T8054 T8081 themeOf Sox6,binding
R5565 T8055 T8082 themeOf c-Myc,binds
R5566 T8056 T8083 themeOf HA,tagged
R5567 T8057 T8083 themeOf Sox6,tagged
R5590 T8077 T8078 themeOf affecting,regulating

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8852 941-967 Binding denotes by the tagged Sox6 protein
T8851 577-613 Binding denotes two consensus Sox/Sox6 binding sites
T8850 174-222 Binding denotes Sox6 is directly associated with the ɛy promoter
T8847 595-599 Protein denotes Sox6
T8846 294-386 Protein denotes a c-Myc-tagged Sox6 in a reticulocyte lysate-based transcription/translation in vitro system
T8844 211-213 Protein denotes ɛy
T8841 529-537 Entity denotes promoter
T8837 761-765 Protein denotes Sox6
T8835 711-713 Entity denotes M2
T8834 174-178 Protein denotes Sox6
T8826 80-92 Entity denotes the promoter
T8825 502-504 Protein denotes ɛy
T8822 984-989 Protein denotes c-Myc
T8821 729-733 Protein denotes Sox6
T8815 1062-1075 Protein denotes Sox6-specific
T8814 1114-1119 Protein denotes c-Myc
T8812 979-1015 Entity denotes both c-Myc and Sox6 antibodies super
T8808 718-720 Entity denotes M3
T8805 577-613 Entity denotes two consensus Sox/Sox6 binding sites
T8804 694-696 Entity denotes M1
T8802 994-998 Protein denotes Sox6
T8800 202-222 Entity denotes with the ɛy promoter
T8798 495-513 Entity denotes of the ɛy promoter
T8797 591-599 Protein denotes Sox/Sox6
T8792 319-331 Entity denotes reticulocyte
T8787 591-599 Protein denotes Sox/Sox6
T8786 1154-1168 Protein denotes HA-tagged Sox6
T8782 23-25 Protein denotes ɛy
T8781 110-149 Entity denotes intermediates affecting the ɛy promoter
T8778 138-140 Protein denotes ɛy
T8770 839-911 Entity denotes the ɛy promoter defined by the deletion analysis experiments (Figure 2C)
T8769 941-967 Protein denotes by the tagged Sox6 protein
T8764 843-845 Protein denotes ɛy
T8763 725-733 Protein denotes Sox/Sox6
T8762 134-149 Entity denotes the ɛy promoter
T8760 0-4 Protein denotes Sox6
T8759 725-733 Protein denotes Sox/Sox6
T8755 19-35 Entity denotes the ɛy promoter,
T8754 955-959 Protein denotes Sox6
R6168 T8755 T8782 partOf "the ɛy promoter,",ɛy
R6173 T8762 T8778 partOf the ɛy promoter,ɛy
R6177 T8769 T8852 themeOf by the tagged Sox6 protein,by the tagged Sox6 protein
R6178 T8770 T8764 partOf the ɛy promoter defined by the deletion analysis experiments (Figure 2C),ɛy
R6193 T8798 T8825 partOf of the ɛy promoter,ɛy
R6196 T8800 T8844 partOf with the ɛy promoter,ɛy
R6197 T8800 T8850 themeOf with the ɛy promoter,Sox6 is directly associated with the ɛy promoter
R6200 T8805 T8851 themeOf two consensus Sox/Sox6 binding sites,two consensus Sox/Sox6 binding sites
R6201 T8834 T8850 themeOf Sox6,Sox6 is directly associated with the ɛy promoter

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8221 429-432 DT denotes The
T8220 427-428 . denotes .
T8219 425-427 NN denotes 3A
T8218 418-424 NN denotes Figure
T8217 415-417 IN denotes in
T8216 408-414 VBN denotes listed
T8215 404-407 VBP denotes are
T8214 399-403 VBN denotes used
T8213 392-398 NNS denotes probes
T8212 388-391 DT denotes The
T8211 386-387 . denotes .
T8210 380-386 NN denotes system
T8209 374-379 NN denotes vitro
T8208 371-373 IN denotes in
T8207 345-370 NN denotes transcription/translation
T8206 332-344 JJ denotes lysate-based
T8205 319-331 NN denotes reticulocyte
T8204 317-318 DT denotes a
T8203 314-316 IN denotes in
T8202 309-313 NN denotes Sox6
T8201 296-308 JJ denotes c-Myc-tagged
T8200 294-295 DT denotes a
T8199 288-293 VBG denotes using
T8198 286-287 -RRB- denotes )
T8197 282-286 NNP denotes EMSA
T8196 281-282 -LRB- denotes (
T8195 274-280 NNS denotes assays
T8194 268-273 NN denotes shift
T8193 259-267 NN denotes mobility
T8192 243-258 JJ denotes electrophoretic
T8191 233-242 VBD denotes performed
T8190 227-232 RB denotes first
T8189 224-226 PRP denotes we
T8188 222-223 , denotes ,
T8187 214-222 NN denotes promoter
T8186 211-213 JJ denotes ɛy
T8185 207-210 DT denotes the
T8184 202-206 IN denotes with
T8183 191-201 VBN denotes associated
T8182 182-190 RB denotes directly
T8181 179-181 VBZ denotes is
T8180 174-178 NNP denotes Sox6
T8179 166-173 IN denotes whether
T8178 154-165 VB denotes investigate
T8177 151-153 TO denotes To
T8176 149-150 . denotes .
T8175 141-149 NN denotes promoter
T8174 138-140 JJ denotes ɛy
T8173 134-137 DT denotes the
T8172 124-133 VBG denotes affecting
T8171 110-123 NNS denotes intermediates
T8170 99-109 VBG denotes regulating
T8169 96-98 IN denotes by
T8168 93-95 CC denotes or
T8167 84-92 NN denotes promoter
T8166 80-83 DT denotes the
T8165 75-79 IN denotes with
T8164 67-74 NN denotes contact
T8163 58-66 JJ denotes physical
T8162 51-57 JJ denotes direct
T8161 43-50 IN denotes through
T8160 36-42 CC denotes either
T8159 34-35 , denotes ,
T8158 26-34 NN denotes promoter
T8157 23-25 JJ denotes ɛy
T8156 19-22 DT denotes the
T8155 11-18 VB denotes repress
T8154 5-10 MD denotes might
T8153 0-4 NNP denotes Sox6
T8378 1234-1235 . denotes .
T8377 1233-1234 -RRB- denotes )
T8376 1231-1233 NN denotes 3C
T8375 1224-1230 NN denotes Figure
T8374 1223-1224 -LRB- denotes (
T8373 1215-1222 NNS denotes results
T8372 1209-1214 DT denotes these
T8371 1199-1208 VBD denotes confirmed
T8370 1194-1198 WDT denotes that
T8369 1189-1193 NNP denotes EMSA
T8368 1181-1188 DT denotes another
T8367 1178-1180 IN denotes in
T8366 1173-1177 VBN denotes used
T8365 1169-1172 VBD denotes was
T8364 1164-1168 NN denotes Sox6
T8363 1154-1163 JJ denotes HA-tagged
T8362 1151-1153 DT denotes an
T8361 1149-1150 , denotes ,
T8360 1144-1149 NN denotes probe
T8359 1140-1143 DT denotes the
T8358 1137-1139 TO denotes to
T8357 1131-1136 VBZ denotes binds
T8356 1124-1130 PRP denotes itself
T8355 1120-1123 NN denotes tag
T8354 1114-1119 JJ denotes c-Myc
T8353 1110-1113 DT denotes the
T8352 1105-1109 IN denotes that
T8351 1093-1104 NN denotes possibility
T8350 1089-1092 DT denotes the
T8349 1085-1088 RP denotes out
T8348 1080-1084 VB denotes rule
T8347 1077-1079 TO denotes To
T8346 1075-1076 . denotes .
T8345 1062-1075 JJ denotes Sox6-specific
T8344 1059-1061 VBZ denotes is
T8343 1051-1058 JJ denotes binding
T8342 1047-1050 DT denotes the
T8341 1042-1046 IN denotes that
T8340 1031-1041 VBG denotes indicating
T8339 1029-1030 , denotes ,
T8338 1025-1029 NN denotes band
T8337 1021-1024 DT denotes the
T8336 1010-1020 VBP denotes supershift
T8335 999-1009 NNS denotes antibodies
T8334 994-998 JJ denotes Sox6
T8333 990-993 CC denotes and
T8332 984-989 JJ denotes c-Myc
T8331 979-983 DT denotes both
T8330 977-978 , denotes ,
T8329 969-977 RB denotes Moreover
T8328 967-968 . denotes .
T8327 960-967 NN denotes protein
T8326 955-959 NNP denotes Sox6
T8325 948-954 VBN denotes tagged
T8324 944-947 DT denotes the
T8323 941-943 IN denotes by
T8322 933-940 VBN denotes shifted
T8321 929-932 VBD denotes was
T8320 923-928 NN denotes probe
T8319 917-922 JJ denotes 36-bp
T8318 913-916 DT denotes The
T8317 911-912 . denotes .
T8316 910-911 -RRB- denotes )
T8315 908-910 CD denotes 2C
T8314 901-907 NN denotes Figure
T8313 900-901 -LRB- denotes (
T8312 888-899 NNS denotes experiments
T8311 879-887 NN denotes analysis
T8310 870-878 NN denotes deletion
T8309 866-869 DT denotes the
T8308 863-865 IN denotes by
T8307 855-862 VBN denotes defined
T8306 846-854 NN denotes promoter
T8305 843-845 JJ denotes ɛy
T8304 839-842 DT denotes the
T8303 832-838 IN denotes within
T8302 830-831 -RRB- denotes )
T8301 828-830 NN denotes 3B
T8300 821-827 NN denotes Figure
T8299 820-821 -LRB- denotes (
T8298 813-819 NN denotes region
T8297 807-812 JJ denotes 36-bp
T8296 803-806 DT denotes the
T8295 798-802 IN denotes with
T8294 788-797 JJ denotes associate
T8293 777-787 RB denotes physically
T8292 774-776 TO denotes to
T8291 769-773 JJ denotes able
T8290 766-768 VBZ denotes is
T8289 761-765 NNP denotes Sox6
T8288 759-760 . denotes .
T8287 758-759 -RRB- denotes )
T8286 756-758 NN denotes 3A
T8285 749-755 NN denotes Figure
T8284 748-749 -LRB- denotes (
T8283 742-747 NNS denotes sites
T8282 734-741 JJ denotes binding
T8281 725-733 NNP denotes Sox/Sox6
T8280 722-724 IN denotes in
T8279 720-721 -RRB- denotes )
T8278 718-720 CD denotes M3
T8277 714-717 CC denotes and
T8276 711-713 CD denotes M2
T8275 710-711 -LRB- denotes (
T8274 702-709 VBN denotes mutated
T8273 699-701 CC denotes or
T8272 697-698 , denotes ,
T8271 696-697 -RRB- denotes )
T8270 694-696 CD denotes M1
T8269 693-694 -LRB- denotes (
T8268 683-692 VBN denotes truncated
T8267 676-682 CC denotes either
T8266 674-675 , denotes ,
T8265 671-674 VBP denotes are
T8264 666-670 WDT denotes that
T8263 659-665 NNS denotes probes
T8262 651-658 VBN denotes mutated
T8261 645-650 CD denotes three
T8260 641-644 VBP denotes are
T8259 636-640 NNP denotes EMSA
T8258 632-635 PRP$ denotes our
T8257 629-631 IN denotes in
T8256 620-628 VBN denotes included
T8255 615-619 RB denotes Also
T8254 613-614 . denotes .
T8253 608-613 NNS denotes sites
T8252 600-607 JJ denotes binding
T8251 591-599 NNP denotes Sox/Sox6
T8250 581-590 NN denotes consensus
T8249 577-580 CD denotes two
T8248 568-576 VBZ denotes contains
T8247 562-567 NN denotes probe
T8246 557-561 DT denotes This
T8245 555-556 . denotes .
T8244 547-555 NNS denotes analyses
T8243 538-546 NN denotes deletion
T8242 529-537 NN denotes promoter
T8241 525-528 PRP$ denotes our
T8240 522-524 IN denotes in
T8239 514-521 VBN denotes defined
T8238 505-513 NN denotes promoter
T8237 502-504 JJ denotes ɛy
T8236 498-501 DT denotes the
T8235 495-497 IN denotes of
T8234 488-494 NN denotes region
T8233 479-487 JJ denotes critical
T8232 475-478 DT denotes the
T8231 472-474 TO denotes to
T8230 460-471 NNS denotes corresponds
T8229 454-459 NN denotes probe
T8228 451-453 NN denotes WT
T8227 449-450 -RRB- denotes )
T8226 447-449 NN denotes bp
T8225 446-447 -LRB- denotes (
T8224 441-445 NN denotes pair
T8223 436-440 NN denotes base
T8222 433-435 CD denotes 36
R5604 T8230 T8230 ROOT corresponds,corresponds
R5605 T8231 T8230 prep to,corresponds
R5606 T8232 T8234 det the,region
R5607 T8233 T8234 amod critical,region
R5608 T8234 T8231 pobj region,to
R5612 T8235 T8234 prep of,region
R5616 T8236 T8238 det the,promoter
R5621 T8237 T8238 amod ɛy,promoter
R5626 T8238 T8235 pobj promoter,of
R5627 T8154 T8155 aux might,repress
R5628 T8155 T8155 ROOT repress,repress
R5629 T8239 T8238 acl defined,promoter
R5630 T8156 T8158 det the,promoter
R5631 T8157 T8158 amod ɛy,promoter
R5632 T8158 T8155 dobj promoter,repress
R5633 T8240 T8239 prep in,defined
R5634 T8159 T8155 punct ",",repress
R5635 T8160 T8161 preconj either,through
R5636 T8161 T8155 prep through,repress
R5637 T8162 T8164 amod direct,contact
R5638 T8241 T8244 poss our,analyses
R5639 T8163 T8164 amod physical,contact
R5640 T8164 T8161 pobj contact,through
R5641 T8165 T8164 prep with,contact
R5642 T8242 T8243 compound promoter,deletion
R5643 T8166 T8167 det the,promoter
R5644 T8167 T8165 pobj promoter,with
R5645 T8168 T8165 cc or,with
R5646 T8243 T8244 compound deletion,analyses
R5647 T8169 T8155 prep by,repress
R5648 T8170 T8169 pcomp regulating,by
R5649 T8171 T8170 dobj intermediates,regulating
R5650 T8244 T8240 pobj analyses,in
R5651 T8172 T8171 acl affecting,intermediates
R5652 T8173 T8175 det the,promoter
R5653 T8245 T8230 punct .,corresponds
R5654 T8174 T8175 amod ɛy,promoter
R5655 T8175 T8172 dobj promoter,affecting
R5656 T8176 T8155 punct .,repress
R5657 T8177 T8178 aux To,investigate
R5658 T8178 T8191 advcl investigate,performed
R5659 T8179 T8183 mark whether,associated
R5660 T8180 T8183 nsubjpass Sox6,associated
R5661 T8181 T8183 auxpass is,associated
R5662 T8246 T8247 det This,probe
R5663 T8182 T8183 advmod directly,associated
R5664 T8183 T8178 ccomp associated,investigate
R5665 T8184 T8183 prep with,associated
R5666 T8185 T8187 det the,promoter
R5667 T8247 T8248 nsubj probe,contains
R5668 T8186 T8187 amod ɛy,promoter
R5669 T8187 T8184 pobj promoter,with
R5670 T8188 T8191 punct ",",performed
R5671 T8189 T8191 nsubj we,performed
R5672 T8248 T8248 ROOT contains,contains
R5673 T8190 T8191 advmod first,performed
R5674 T8191 T8191 ROOT performed,performed
R5675 T8192 T8194 amod electrophoretic,shift
R5676 T8193 T8194 compound mobility,shift
R5677 T8194 T8195 compound shift,assays
R5678 T8195 T8191 dobj assays,performed
R5679 T8249 T8253 nummod two,sites
R5680 T8196 T8195 punct (,assays
R5681 T8197 T8195 appos EMSA,assays
R5682 T8198 T8195 punct ),assays
R5683 T8199 T8191 advcl using,performed
R5684 T8200 T8202 det a,Sox6
R5685 T8250 T8253 compound consensus,sites
R5686 T8201 T8202 amod c-Myc-tagged,Sox6
R5687 T8251 T8253 nmod Sox/Sox6,sites
R5688 T8202 T8199 dobj Sox6,using
R5689 T8203 T8199 prep in,using
R5690 T8204 T8207 det a,transcription/translation
R5691 T8252 T8253 amod binding,sites
R5692 T8205 T8207 nmod reticulocyte,transcription/translation
R5693 T8206 T8207 amod lysate-based,transcription/translation
R5694 T8207 T8203 pobj transcription/translation,in
R5695 T8253 T8248 dobj sites,contains
R5696 T8208 T8207 prep in,transcription/translation
R5697 T8209 T8210 amod vitro,system
R5698 T8254 T8248 punct .,contains
R5699 T8210 T8208 pobj system,in
R5700 T8211 T8191 punct .,performed
R5701 T8255 T8256 advmod Also,included
R5702 T8212 T8213 det The,probes
R5703 T8213 T8216 nsubjpass probes,listed
R5704 T8214 T8213 acl used,probes
R5705 T8215 T8216 auxpass are,listed
R5706 T8216 T8216 ROOT listed,listed
R5707 T8217 T8216 prep in,listed
R5708 T8256 T8256 ROOT included,included
R5709 T8218 T8219 compound Figure,3A
R5710 T8219 T8217 pobj 3A,in
R5711 T8220 T8216 punct .,listed
R5712 T8257 T8256 prep in,included
R5713 T8221 T8224 det The,pair
R5714 T8222 T8223 nummod 36,base
R5715 T8223 T8224 compound base,pair
R5716 T8258 T8259 poss our,EMSA
R5717 T8224 T8224 ROOT pair,pair
R5718 T8225 T8224 punct (,pair
R5719 T8226 T8224 appos bp,pair
R5720 T8259 T8257 pobj EMSA,in
R5721 T8227 T8224 punct ),pair
R5722 T8228 T8229 compound WT,probe
R5723 T8229 T8230 nsubj probe,corresponds
R5724 T8260 T8256 auxpass are,included
R5725 T8261 T8263 nummod three,probes
R5726 T8262 T8263 amod mutated,probes
R5727 T8263 T8256 nsubjpass probes,included
R5728 T8327 T8323 pobj protein,by
R5729 T8264 T8265 nsubj that,are
R5730 T8328 T8322 punct .,shifted
R5731 T8329 T8336 advmod Moreover,supershift
R5732 T8330 T8336 punct ",",supershift
R5733 T8265 T8263 relcl are,probes
R5734 T8331 T8332 preconj both,c-Myc
R5735 T8332 T8336 nsubj c-Myc,supershift
R5736 T8266 T8265 punct ",",are
R5737 T8333 T8332 cc and,c-Myc
R5738 T8334 T8332 conj Sox6,c-Myc
R5739 T8335 T8332 conj antibodies,c-Myc
R5740 T8267 T8268 preconj either,truncated
R5741 T8336 T8336 ROOT supershift,supershift
R5742 T8337 T8338 det the,band
R5743 T8268 T8265 acomp truncated,are
R5744 T8338 T8336 dobj band,supershift
R5745 T8339 T8336 punct ",",supershift
R5746 T8340 T8336 advcl indicating,supershift
R5747 T8269 T8268 punct (,truncated
R5748 T8341 T8344 mark that,is
R5749 T8342 T8343 det the,binding
R5750 T8343 T8344 nsubj binding,is
R5751 T8270 T8268 npadvmod M1,truncated
R5752 T8344 T8340 ccomp is,indicating
R5753 T8345 T8344 acomp Sox6-specific,is
R5754 T8346 T8336 punct .,supershift
R5755 T8347 T8348 aux To,rule
R5756 T8348 T8366 advcl rule,used
R5757 T8349 T8348 prt out,rule
R5758 T8271 T8268 punct ),truncated
R5759 T8350 T8351 det the,possibility
R5760 T8351 T8348 dobj possibility,rule
R5761 T8352 T8357 mark that,binds
R5762 T8272 T8265 punct ",",are
R5763 T8353 T8355 det the,tag
R5764 T8354 T8355 amod c-Myc,tag
R5765 T8355 T8357 nsubj tag,binds
R5766 T8273 T8265 cc or,are
R5767 T8356 T8355 appos itself,tag
R5768 T8357 T8351 acl binds,possibility
R5769 T8274 T8265 conj mutated,are
R5770 T8275 T8274 punct (,mutated
R5771 T8358 T8357 prep to,binds
R5772 T8276 T8274 dobj M2,mutated
R5773 T8359 T8360 det the,probe
R5774 T8360 T8358 pobj probe,to
R5775 T8361 T8366 punct ",",used
R5776 T8277 T8276 cc and,M2
R5777 T8362 T8364 det an,Sox6
R5778 T8363 T8364 amod HA-tagged,Sox6
R5779 T8364 T8366 nsubjpass Sox6,used
R5780 T8278 T8276 conj M3,M2
R5781 T8365 T8366 auxpass was,used
R5782 T8366 T8366 ROOT used,used
R5783 T8279 T8276 punct ),M2
R5784 T8367 T8366 prep in,used
R5785 T8368 T8369 det another,EMSA
R5786 T8369 T8367 pobj EMSA,in
R5787 T8280 T8274 prep in,mutated
R5788 T8370 T8371 nsubj that,confirmed
R5789 T8371 T8366 ccomp confirmed,used
R5790 T8372 T8373 det these,results
R5791 T8281 T8280 pobj Sox/Sox6,in
R5792 T8373 T8371 dobj results,confirmed
R5793 T8374 T8376 punct (,3C
R5794 T8375 T8376 compound Figure,3C
R5795 T8282 T8283 amod binding,sites
R5796 T8376 T8373 appos 3C,results
R5797 T8377 T8376 punct ),3C
R5798 T8378 T8366 punct .,used
R5799 T8283 T8280 pobj sites,in
R5802 T8284 T8286 punct (,3A
R5810 T8285 T8286 compound Figure,3A
R5814 T8286 T8274 npadvmod 3A,mutated
R5818 T8287 T8263 punct ),probes
R5822 T8288 T8256 punct .,included
R5826 T8289 T8290 nsubj Sox6,is
R5830 T8290 T8290 ROOT is,is
R5834 T8291 T8290 acomp able,is
R5838 T8292 T8294 aux to,associate
R5842 T8293 T8294 advmod physically,associate
R5846 T8294 T8291 xcomp associate,able
R5850 T8295 T8294 prep with,associate
R5854 T8296 T8298 det the,region
R5858 T8297 T8298 amod 36-bp,region
R5859 T8298 T8295 pobj region,with
R5861 T8299 T8301 punct (,3B
R5862 T8300 T8301 compound Figure,3B
R5864 T8301 T8298 appos 3B,region
R5866 T8302 T8298 punct ),region
R5869 T8303 T8294 prep within,associate
R5873 T8304 T8306 det the,promoter
R5877 T8305 T8306 amod ɛy,promoter
R5879 T8306 T8303 pobj promoter,within
R5881 T8307 T8306 acl defined,promoter
R5884 T8308 T8307 agent by,defined
R5887 T8309 T8312 det the,experiments
R5891 T8310 T8312 compound deletion,experiments
R5894 T8311 T8312 compound analysis,experiments
R5897 T8312 T8308 pobj experiments,by
R5901 T8313 T8314 punct (,Figure
R5904 T8314 T8312 appos Figure,experiments
R5912 T8315 T8314 nummod 2C,Figure
R5916 T8316 T8314 punct ),Figure
R5919 T8317 T8290 punct .,is
R5924 T8318 T8320 det The,probe
R5927 T8319 T8320 compound 36-bp,probe
R5931 T8320 T8322 nsubjpass probe,shifted
R5935 T8321 T8322 auxpass was,shifted
R5939 T8322 T8322 ROOT shifted,shifted
R5943 T8323 T8322 agent by,shifted
R5947 T8324 T8327 det the,protein
R5951 T8325 T8327 amod tagged,protein
R5955 T8326 T8327 compound Sox6,protein

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7360 1131-1136 Binding denotes binds
T7359 1164-1168 Protein denotes Sox6
T7358 1116-1119 Protein denotes Myc
T7357 1062-1066 Protein denotes Sox6
T7356 994-998 Protein denotes Sox6
T7355 984-989 Protein denotes c-Myc
T7354 955-959 Protein denotes Sox6
T7353 788-797 Binding denotes associate
T7352 761-765 Protein denotes Sox6
T7351 729-733 Protein denotes Sox6
T7350 725-728 Protein denotes Sox
T7349 595-599 Protein denotes Sox6
T7348 591-594 Protein denotes Sox
T7347 191-201 Binding denotes associated
T7346 309-313 Protein denotes Sox6
T7345 174-178 Protein denotes Sox6
T7344 0-4 Protein denotes Sox6
R4985 T7345 T7347 themeOf Sox6,associated
R4986 T7352 T7353 themeOf Sox6,associate
R4987 T7358 T7360 themeOf Myc,binds

testone

Id Subject Object Predicate Lexical cue
T7047 1131-1136 Binding denotes binds
T7046 1051-1058 Binding denotes binding
T7045 810-812 Entity denotes bp
T7044 807-809 Entity denotes 36
T7043 788-797 Binding denotes associate
T7042 191-201 Binding denotes associated
T7041 124-133 Regulation denotes affecting
T7040 11-18 Negative_regulation denotes repress
T7020 1164-1168 Protein denotes Sox6
T7019 1154-1156 Protein denotes HA
T7018 1114-1119 Protein denotes c-Myc
T7017 1062-1066 Protein denotes Sox6
T7016 994-998 Protein denotes Sox6
T7015 984-989 Protein denotes c-Myc
T7014 955-959 Protein denotes Sox6
T7013 843-845 Protein denotes ɛy
T7012 761-765 Protein denotes Sox6
T7011 502-504 Protein denotes ɛy
T7010 309-313 Protein denotes Sox6
T7009 296-301 Protein denotes c-Myc
T7008 211-213 Protein denotes ɛy
T7007 174-178 Protein denotes Sox6
T7006 138-140 Protein denotes ɛy
T7005 23-25 Protein denotes ɛy
T7004 0-4 Protein denotes Sox6
R4896 T7004 T7040 causeOf Sox6,repress
R4897 T7007 T7042 themeOf Sox6,associated
R4898 T7012 T7043 themeOf Sox6,associate
R4899 T7015 T7046 themeOf c-Myc,binding
R4900 T7017 T7046 themeOf Sox6,binding
R4901 T7018 T7047 themeOf c-Myc,binds
R4902 T7019 T7047 themeOf HA,binds
R4903 T7020 T7047 themeOf Sox6,binds

test3

Id Subject Object Predicate Lexical cue
T7117 1164-1168 Protein denotes Sox6
T7116 1154-1156 Protein denotes HA
T7115 1131-1136 Binding denotes binds
T7114 1114-1119 Protein denotes c-Myc
T7113 1062-1066 Protein denotes Sox6
T7112 1051-1058 Binding denotes binding
T7111 994-998 Protein denotes Sox6
T7110 984-989 Protein denotes c-Myc
T7109 955-959 Protein denotes Sox6
T7108 843-845 Protein denotes ɛy
T7107 761-765 Protein denotes Sox6
T7106 502-504 Protein denotes ɛy
T7105 309-313 Protein denotes Sox6
T7104 296-301 Protein denotes c-Myc
T7103 211-213 Protein denotes ɛy
T7102 174-178 Protein denotes Sox6
T7101 138-140 Protein denotes ɛy
T7100 124-133 Regulation denotes affecting
T7099 23-25 Protein denotes ɛy
T7098 11-18 Negative_regulation denotes repress
T7097 0-4 Protein denotes Sox6
T7076 1164-1168 Protein denotes Sox6
T7075 1154-1156 Protein denotes HA
T7074 1114-1119 Protein denotes c-Myc
T7073 1062-1066 Protein denotes Sox6
T7072 994-998 Protein denotes Sox6
T7071 984-989 Protein denotes c-Myc
T7070 955-959 Protein denotes Sox6
T7069 843-845 Protein denotes ɛy
T7068 761-765 Protein denotes Sox6
T7067 502-504 Protein denotes ɛy
T7066 309-313 Protein denotes Sox6
T7065 296-301 Protein denotes c-Myc
T7064 211-213 Protein denotes ɛy
T7063 174-178 Protein denotes Sox6
T7062 138-140 Protein denotes ɛy
T7061 23-25 Protein denotes ɛy
T7060 0-4 Protein denotes Sox6
R4919 T7097 T7098 causeOf Sox6,repress
R4920 T7097 T7100 causeOf Sox6,affecting
R4921 T7099 T7097 themeOf ɛy,Sox6
R4922 T7103 T7102 themeOf ɛy,Sox6
R4923 T7105 T7102 themeOf Sox6,Sox6
R4924 T7110 T7112 themeOf c-Myc,binding
R4925 T7111 T7112 themeOf Sox6,binding
R4926 T7113 T7112 themeOf Sox6,binding
R4927 T7114 T7115 themeOf c-Myc,binds
R4928 T7116 T7115 themeOf HA,binds
R4929 T7117 T7115 themeOf Sox6,binds