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2_test

Id Subject Object Predicate Lexical cue
16462943-283312-85760997 1478-1480 283312 denotes 33
T6698 1478-1480 283312 denotes 33

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7965 2984-2989 NN denotes dimer
T7964 2982-2983 DT denotes a
T7963 2979-2981 IN denotes as
T7962 2970-2978 RB denotes probably
T7961 2968-2969 -COMMA- denotes ,
T7960 2960-2968 NN denotes promoter
T7959 2957-2959 JJ denotes ɛy
T7958 2953-2956 DT denotes the
T7957 2950-2952 TO denotes to
T7956 2942-2949 VB denotes binding
T7955 2933-2941 RB denotes directly
T7954 2930-2932 IN denotes by
T7953 2925-2929 NN denotes gene
T7952 2922-2924 JJ denotes ɛy
T7951 2918-2921 DT denotes the
T7950 2915-2917 IN denotes of
T7949 2905-2914 NN denotes repressor
T7948 2903-2904 DT denotes a
T7947 2900-2902 IN denotes as
T7946 2895-2899 VB denotes acts
T7945 2890-2894 NN denotes Sox6
T7944 2885-2889 IN denotes that
T7943 2876-2884 VB denotes indicate
T7942 2868-2875 RB denotes clearly
T7941 2866-2867 -RRB- denotes )
T7940 2865-2866 CD denotes 4
T7939 2861-2864 CC denotes and
T7938 2859-2860 CD denotes 3
T7937 2851-2858 NN denotes Figures
T7936 2850-2851 -LRB- denotes (
T7935 2845-2849 NN denotes data
T7934 2839-2844 JJ denotes above
T7933 2835-2838 DT denotes The
T7932 2832-2833 -RRB- denotes )
T7931 2830-2832 NN denotes 4A
T7930 2823-2829 NN denotes Figure
T7929 2822-2823 -LRB- denotes (
T7928 2814-2821 NN denotes control
T7927 2805-2813 JJ denotes negative
T7926 2803-2804 DT denotes a
T7925 2800-2802 IN denotes as
T7924 2795-2799 VB denotes used
T7923 2791-2794 VB denotes was
T7922 2787-2790 NN denotes IgG
T7921 2780-2786 JJ denotes Normal
T7920 2773-2778 NN denotes cells
T7919 2767-2772 NN denotes liver
T7918 2763-2766 CC denotes and
T7917 2757-2762 NN denotes cells
T7916 2753-2756 NN denotes MEL
T7915 2748-2752 CC denotes both
T7914 2745-2747 IN denotes in
T7913 2736-2744 NN denotes antibody
T7912 2731-2735 NN denotes Sox6
T7911 2726-2730 IN denotes with
T7910 2707-2725 VB denotes immunoprecipitated
T7909 2699-2706 RB denotes readily
T7908 2696-2698 VB denotes is
T7907 2687-2695 NN denotes promoter
T7906 2678-2686 JJ denotes proximal
T7905 2675-2677 JJ denotes ɛy
T7904 2671-2674 DT denotes the
T7903 2666-2670 IN denotes that
T7902 2660-2665 NN denotes shows
T7901 2658-2659 CD denotes 4
T7900 2651-2657 NN denotes Figure
T7899 2641-2649 NN denotes antibody
T7898 2636-2640 NN denotes Sox6
T7897 2630-2635 VB denotes using
T7896 2625-2629 NN denotes mice
T7895 2622-2624 JJ denotes WT
T7894 2618-2621 NN denotes dpc
T7893 2613-2617 CD denotes 15.5
T7892 2610-2612 IN denotes of
T7891 2604-2609 NN denotes cells
T7890 2598-2603 NN denotes liver
T7889 2593-2597 IN denotes from
T7888 2590-2592 CC denotes or
T7887 2584-2589 NN denotes cells
T7886 2580-2583 NN denotes MEL
T7885 2575-2579 IN denotes from
T7884 2556-2574 VB denotes immunoprecipitated
T7883 2552-2555 VB denotes was
T7882 2544-2551 NN denotes complex
T7881 2528-2543 JJ denotes Sox6-containing
T7880 2524-2527 DT denotes The
T7879 2521-2522 -RRB- denotes )
T7878 2520-2521 CD denotes 4
T7877 2513-2519 NN denotes Figure
T7876 2512-2513 -LRB- denotes (
T7875 2510-2511 -RRB- denotes )
T7874 2506-2510 NN denotes ChIP
T7873 2505-2506 -LRB- denotes (
T7872 2485-2504 NN denotes immunoprecipitation
T7871 2475-2484 NN denotes chromatin
T7870 2469-2474 VB denotes using
T7869 2464-2468 FW denotes vivo
T7868 2461-2463 FW denotes in
T7867 2452-2460 NN denotes promoter
T7866 2449-2451 JJ denotes ɛy
T7865 2445-2448 DT denotes the
T7864 2442-2444 TO denotes to
T7863 2436-2441 VB denotes binds
T7862 2431-2435 NN denotes Sox6
T7861 2423-2430 IN denotes whether
T7860 2416-2422 VB denotes tested
T7859 2411-2415 RB denotes also
T7858 2408-2410 PRP denotes We
T7857 2400-2406 NN denotes degree
T7856 2395-2399 JJ denotes same
T7855 2391-2394 DT denotes the
T7854 2388-2390 TO denotes to
T7853 2384-2387 RB denotes not
T7852 2380-2383 CC denotes but
T7851 2378-2379 -COMMA- denotes ,
T7850 2374-2378 NN denotes Sox6
T7849 2371-2373 IN denotes by
T7848 2368-2370 NN denotes ɛy
T7847 2365-2367 IN denotes of
T7846 2354-2364 NN denotes repression
T7845 2346-2353 JJ denotes maximal
T7844 2342-2345 IN denotes for
T7843 2333-2341 VB denotes required
T7842 2329-2332 VB denotes are
T7841 2323-2328 NN denotes sites
T7840 2318-2322 DT denotes both
T7839 2316-2317 -COMMA- denotes ,
T7838 2312-2316 RB denotes Thus
T7837 2309-2310 -RRB- denotes )
T7836 2307-2309 NN denotes 3F
T7835 2300-2306 NN denotes Figure
T7834 2299-2300 -LRB- denotes (
T7833 2291-2298 NN denotes studies
T7832 2278-2290 NN denotes transfection
T7831 2275-2277 IN denotes in
T7830 2264-2274 NN denotes repression
T7829 2255-2263 NN denotes promoter
T7828 2243-2254 JJ denotes significant
T7827 2240-2242 IN denotes in
T7826 2233-2239 VB denotes result
T7825 2229-2232 RB denotes not
T7824 2226-2228 VB denotes do
T7823 2224-2225 -RRB- denotes )
T7822 2213-2224 VB denotes mutagenized
T7821 2207-2212 NN denotes sites
T7820 2199-2206 NN denotes binding
T7819 2190-2198 NN denotes Sox/Sox6
T7818 2185-2189 CC denotes both
T7817 2182-2184 CC denotes or
T7816 2178-2181 CD denotes one
T7815 2171-2177 CC denotes either
T7814 2166-2170 IN denotes with
T7813 2165-2166 -LRB- denotes (
T7812 2154-2164 NN denotes constructs
T7811 2145-2153 NN denotes reporter
T7810 2136-2144 NN denotes promoter
T7809 2133-2135 JJ denotes ɛy
T7808 2126-2132 JJ denotes mutant
T7807 2122-2125 DT denotes the
T7806 2120-2121 -COMMA- denotes ,
T7805 2113-2120 NN denotes results
T7804 2108-2112 NN denotes EMSA
T7803 2104-2107 DT denotes the
T7802 2099-2103 IN denotes with
T7801 2088-2098 JJ denotes Consistent
T7800 2081-2086 NN denotes cells
T7799 2075-2080 NN denotes GM979
T7798 2070-2074 IN denotes into
T7797 2063-2069 NN denotes vector
T7796 2048-2062 NN denotes overexpression
T7795 2043-2047 NN denotes Sox6
T7794 2039-2042 DT denotes the
T7793 2034-2038 IN denotes with
T7792 2019-2033 VB denotes co-transfected
T7791 2014-2018 VB denotes were
T7790 2008-2013 NN denotes sites
T7789 2000-2007 NN denotes binding
T7788 1991-1999 NN denotes Sox/Sox6
T7787 1979-1990 VB denotes mutagenized
T7786 1974-1978 IN denotes with
T7785 1963-1973 NN denotes constructs
T7784 1954-1962 NN denotes reporter
T7783 1945-1953 NN denotes promoter
T7782 1942-1944 JJ denotes ɛy
T7781 1938-1941 DT denotes the
T7780 1936-1937 -COMMA- denotes ,
T7779 1931-1936 NN denotes sites
T7778 1923-1930 NN denotes binding
T7777 1914-1922 NN denotes Sox/Sox6
T7776 1907-1913 JJ denotes intact
T7775 1903-1906 DT denotes the
T7774 1900-1902 IN denotes of
T7773 1887-1899 NN denotes significance
T7772 1876-1886 JJ denotes functional
T7771 1872-1875 DT denotes the
T7770 1860-1871 VB denotes investigate
T7769 1857-1859 TO denotes To
T7768 1848-1855 NN denotes binding
T7767 1845-1847 NN denotes WT
T7766 1840-1844 IN denotes with
T7765 1830-1839 RB denotes partially
T7764 1822-1829 VB denotes compete
T7763 1818-1821 MD denotes may
T7762 1812-1817 NN denotes probe
T7761 1805-1811 JJ denotes mutant
T7760 1802-1804 NN denotes M2
T7759 1798-1801 DT denotes The
T7712 1554-1560 JJ denotes intact
T7711 1550-1553 DT denotes The
T7710 1547-1548 -RRB- denotes )
T7709 1545-1547 NN denotes 3D
T7708 1538-1544 NN denotes Figure
T7707 1537-1538 -LRB- denotes (
T7706 1531-1536 NN denotes cells
T7705 1527-1530 NN denotes MEL
T7704 1524-1526 IN denotes in
T7703 1515-1523 NN denotes sequence
T7702 1511-1514 NN denotes DNA
T7701 1506-1510 DT denotes this
T7700 1503-1505 TO denotes to
T7699 1497-1502 VB denotes binds
T7698 1488-1496 RB denotes directly
T7697 1483-1487 NN denotes Sox6
T7696 1480-1481 -RRB- denotes ]
T7695 1478-1480 CD denotes 33
T7694 1477-1478 -LRB- denotes [
T7693 1474-1476 VB denotes ɛy
T7692 1470-1473 RB denotes not
T7691 1466-1469 CC denotes but
T7690 1464-1465 -COMMA- denotes ,
T7689 1457-1464 NN denotes globins
T7688 1455-1456 NN denotes β
T7687 1449-1454 JJ denotes adult
T7686 1441-1448 VB denotes express
T7685 1439-1440 -COMMA- denotes ,
T7684 1435-1439 NN denotes line
T7683 1430-1434 NN denotes cell
T7682 1414-1429 JJ denotes erythroleukemic
T7681 1407-1413 JJ denotes murine
T7680 1405-1406 DT denotes a
T7679 1403-1404 -COMMA- denotes ,
T7678 1398-1403 NN denotes cells
T7677 1394-1397 NN denotes MEL
T7676 1387-1392 NN denotes probe
T7675 1381-1386 JJ denotes 36-bp
T7674 1376-1380 JJ denotes same
T7673 1372-1375 DT denotes the
T7672 1362-1371 VB denotes employing
T7671 1357-1361 NN denotes EMSA
T7670 1354-1356 IN denotes in
T7669 1349-1353 VB denotes used
T7668 1344-1348 VB denotes were
T7667 1338-1343 NN denotes cells
T7666 1334-1337 NN denotes MEL
T7665 1329-1333 IN denotes from
T7664 1320-1328 NN denotes extracts
T7663 1312-1319 JJ denotes nuclear
T7662 1310-1311 -COMMA- denotes ,
T7661 1306-1310 RB denotes Next
T7660 1303-1304 -RRB- denotes )
T7659 1301-1303 NN denotes 3C
T7658 1294-1300 NN denotes Figure
T7657 1293-1294 -LRB- denotes (
T7656 1285-1292 NN denotes results
T7655 1279-1284 DT denotes these
T7654 1269-1278 VB denotes confirmed
T7653 1264-1268 WDT denotes that
T7652 1259-1263 NN denotes EMSA
T7651 1251-1258 DT denotes another
T7650 1248-1250 IN denotes in
T7649 1243-1247 VB denotes used
T7648 1239-1242 VB denotes was
T7647 1234-1238 NN denotes Sox6
T7646 1224-1233 JJ denotes HA-tagged
T7645 1221-1223 DT denotes an
T7644 1219-1220 -COMMA- denotes ,
T7643 1214-1219 NN denotes probe
T7642 1210-1213 DT denotes the
T7641 1207-1209 TO denotes to
T7640 1201-1206 VB denotes binds
T7639 1194-1200 PRP denotes itself
T7638 1190-1193 NN denotes tag
T7637 1184-1189 NN denotes c-Myc
T7636 1180-1183 DT denotes the
T7635 1175-1179 IN denotes that
T7634 1163-1174 NN denotes possibility
T7633 1159-1162 DT denotes the
T7632 1155-1158 RP denotes out
T7631 1150-1154 VB denotes rule
T7630 1147-1149 TO denotes To
T7629 1132-1145 JJ denotes Sox6-specific
T7628 1129-1131 VB denotes is
T7627 1121-1128 NN denotes binding
T7626 1117-1120 DT denotes the
T7625 1112-1116 IN denotes that
T7624 1101-1111 VB denotes indicating
T7623 1099-1100 -COMMA- denotes ,
T7622 1095-1099 NN denotes band
T7621 1091-1094 DT denotes the
T7620 1080-1090 VB denotes supershift
T7619 1069-1079 NN denotes antibodies
T7618 1064-1068 NN denotes Sox6
T7617 1060-1063 CC denotes and
T7616 1054-1059 NN denotes c-Myc
T7615 1049-1053 CC denotes both
T7614 1047-1048 -COMMA- denotes ,
T7613 1039-1047 RB denotes Moreover
T7612 1030-1037 NN denotes protein
T7611 1025-1029 NN denotes Sox6
T7610 1018-1024 VB denotes tagged
T7609 1014-1017 DT denotes the
T7608 1011-1013 IN denotes by
T7607 1003-1010 VB denotes shifted
T7606 999-1002 VB denotes was
T7605 993-998 NN denotes probe
T7604 987-992 JJ denotes 36-bp
T7603 983-986 DT denotes The
T7602 980-981 -RRB- denotes )
T7601 978-980 NN denotes 2C
T7600 971-977 NN denotes Figure
T7599 970-971 -LRB- denotes (
T7598 958-969 NN denotes experiments
T7597 949-957 NN denotes analysis
T7596 940-948 NN denotes deletion
T7595 936-939 DT denotes the
T7594 933-935 IN denotes by
T7593 925-932 VB denotes defined
T7592 916-924 NN denotes promoter
T7591 913-915 JJ denotes ɛy
T7590 909-912 DT denotes the
T7589 902-908 IN denotes within
T7588 900-901 -RRB- denotes )
T7587 898-900 NN denotes 3B
T7586 891-897 NN denotes Figure
T7585 890-891 -LRB- denotes (
T7584 883-889 NN denotes region
T7583 877-882 JJ denotes 36-bp
T7582 873-876 DT denotes the
T7581 868-872 IN denotes with
T7580 858-867 VB denotes associate
T7579 847-857 RB denotes physically
T7578 844-846 TO denotes to
T7577 839-843 JJ denotes able
T7576 836-838 VB denotes is
T7575 831-835 NN denotes Sox6
T7574 828-829 -RRB- denotes )
T7573 826-828 NN denotes 3A
T7572 819-825 NN denotes Figure
T7571 818-819 -LRB- denotes (
T7570 812-817 NN denotes sites
T7569 804-811 NN denotes binding
T7568 795-803 NN denotes Sox/Sox6
T7567 792-794 IN denotes in
T7566 790-791 -RRB- denotes )
T7565 788-790 NN denotes M3
T7564 784-787 CC denotes and
T7563 781-783 NN denotes M2
T7562 780-781 -LRB- denotes (
T7561 772-779 VB denotes mutated
T7560 769-771 CC denotes or
T7559 767-768 -COMMA- denotes ,
T7558 766-767 -RRB- denotes )
T7557 764-766 NN denotes M1
T7556 763-764 -LRB- denotes (
T7555 753-762 VB denotes truncated
T7554 746-752 CC denotes either
T7553 744-745 -COMMA- denotes ,
T7552 741-744 VB denotes are
T7551 736-740 WDT denotes that
T7550 729-735 NN denotes probes
T7549 721-728 VB denotes mutated
T7548 715-720 CD denotes three
T7547 711-714 VB denotes are
T7546 706-710 NN denotes EMSA
T7545 702-705 PRP-DOLLAR- denotes our
T7544 699-701 IN denotes in
T7543 690-698 VB denotes included
T7542 685-689 RB denotes Also
T7541 678-683 NN denotes sites
T7540 670-677 NN denotes binding
T7539 661-669 NN denotes Sox/Sox6
T7538 651-660 NN denotes consensus
T7537 647-650 CD denotes two
T7536 638-646 VB denotes contains
T7535 632-637 NN denotes probe
T7534 627-631 DT denotes This
T7533 617-625 NN denotes analyses
T7532 608-616 NN denotes deletion
T7531 599-607 NN denotes promoter
T7530 595-598 PRP-DOLLAR- denotes our
T7529 592-594 IN denotes in
T7528 584-591 VB denotes defined
T7527 575-583 NN denotes promoter
T7526 572-574 JJ denotes ɛy
T7525 568-571 DT denotes the
T7524 565-567 IN denotes of
T7523 558-564 NN denotes region
T7522 549-557 JJ denotes critical
T7521 545-548 DT denotes the
T7520 542-544 TO denotes to
T7519 530-541 VB denotes corresponds
T7518 524-529 NN denotes probe
T7517 521-523 NN denotes WT
T7516 519-520 -RRB- denotes )
T7515 517-519 NN denotes bp
T7514 516-517 -LRB- denotes (
T7513 511-515 NN denotes pair
T7512 503-510 NN denotes 36–base
T7511 499-502 DT denotes The
T7510 495-497 NN denotes 3A
T7509 488-494 NN denotes Figure
T7508 485-487 IN denotes in
T7507 478-484 VB denotes listed
T7506 474-477 VB denotes are
T7505 469-473 VB denotes used
T7504 462-468 NN denotes probes
T7503 458-461 DT denotes The
T7502 450-456 NN denotes system
T7501 444-449 FW denotes vitro
T7500 441-443 FW denotes in
T7499 415-440 NN denotes transcription/translation
T7498 402-414 JJ denotes lysate-based
T7497 389-401 NN denotes reticulocyte
T7443 54-57 DT denotes the
T7442 51-53 TO denotes to
T7441 45-50 VB denotes Binds
T7440 36-44 RB denotes Directly
T7439 31-35 NN denotes Sox6
T7438 26-30 IN denotes that
T7437 21-25 NNP denotes Show
T7436 14-20 NNP denotes Assays
T7435 9-13 NNP denotes ChIP
T7434 5-8 CC denotes and
T7433 0-4 NN denotes EMSA
T7758 1795-1796 -RRB- denotes )
T7757 1793-1795 NN denotes 3E
T7756 1786-1792 NN denotes Figure
T7755 1785-1786 -LRB- denotes (
T7754 1780-1784 NN denotes EMSA
T7753 1777-1779 IN denotes in
T7752 1769-1776 VB denotes compete
T7751 1766-1768 TO denotes to
T7750 1758-1765 NN denotes ability
T7749 1752-1757 PRP-DOLLAR- denotes their
T7748 1744-1751 VB denotes abolish
T7747 1742-1743 -RRB- denotes )
T7746 1740-1742 NN denotes M3
T7745 1736-1739 CC denotes and
T7744 1733-1735 NN denotes M1
T7743 1732-1733 -LRB- denotes (
T7742 1726-1731 NN denotes sites
T7741 1718-1725 NN denotes binding
T7740 1709-1717 NN denotes Sox/Sox6
T7739 1700-1708 JJ denotes putative
T7738 1697-1699 IN denotes of
T7737 1688-1696 NN denotes Ablation
T7736 1685-1686 -RRB- denotes )
T7735 1683-1685 NN denotes 3E
T7734 1676-1682 NN denotes Figure
T7733 1675-1676 -LRB- denotes (
T7732 1669-1674 NN denotes assay
T7731 1657-1668 NN denotes competition
T7730 1653-1656 DT denotes the
T7729 1650-1652 IN denotes in
T7728 1644-1649 VB denotes shown
T7727 1641-1643 IN denotes as
T7726 1639-1640 -COMMA- denotes ,
T7725 1632-1639 NN denotes binding
T7724 1628-1631 DT denotes the
T7723 1624-1627 IN denotes for
T7722 1615-1623 VB denotes required
T7721 1611-1614 VB denotes are
T7720 1605-1610 NN denotes probe
T7719 1601-1604 NN denotes DNA
T7718 1597-1600 DT denotes the
T7717 1594-1596 IN denotes of
T7716 1588-1593 NN denotes sites
T7715 1580-1587 NN denotes binding
T7714 1571-1579 NN denotes Sox/Sox6
T7713 1561-1570 NN denotes consensus
T7466 204-207 DT denotes the
T7496 387-388 DT denotes a
T7495 384-386 IN denotes in
T7494 379-383 NN denotes Sox6
T7493 366-378 JJ denotes c-Myc-tagged
T7492 364-365 DT denotes a
T7491 358-363 VB denotes using
T7490 356-357 -RRB- denotes )
T7489 352-356 NN denotes EMSA
T7488 351-352 -LRB- denotes (
T7487 344-350 NN denotes assays
T7486 338-343 NN denotes shift
T7485 329-337 NN denotes mobility
T7484 313-328 JJ denotes electrophoretic
T7483 303-312 VB denotes performed
T7482 297-302 RB denotes first
T7481 294-296 PRP denotes we
T7480 292-293 -COMMA- denotes ,
T7479 284-292 NN denotes promoter
T7478 281-283 JJ denotes ɛy
T7477 277-280 DT denotes the
T7476 272-276 IN denotes with
T7475 261-271 VB denotes associated
T7474 252-260 RB denotes directly
T7473 249-251 VB denotes is
T7472 244-248 NN denotes Sox6
T7471 236-243 IN denotes whether
T7470 224-235 VB denotes investigate
T7469 221-223 TO denotes To
T7468 211-219 NN denotes promoter
T7467 208-210 JJ denotes ɛy
T7465 194-203 VB denotes affecting
T7464 180-193 NN denotes intermediates
T7463 169-179 VB denotes regulating
T7462 166-168 IN denotes by
T7461 163-165 CC denotes or
T7460 154-162 NN denotes promoter
T7459 150-153 DT denotes the
T7458 145-149 IN denotes with
T7457 137-144 NN denotes contact
T7456 128-136 JJ denotes physical
T7455 121-127 JJ denotes direct
T7454 113-120 IN denotes through
T7453 106-112 CC denotes either
T7452 104-105 -COMMA- denotes ,
T7451 96-104 NN denotes promoter
T7450 93-95 JJ denotes ɛy
T7449 89-92 DT denotes the
T7448 81-88 VB denotes repress
T7447 75-80 MD denotes might
T7446 70-74 NN denotes Sox6
T7445 61-69 NN denotes Promoter
T7444 58-60 JJ denotes ɛy
R5002 T7433 T7434 arg1Of EMSA,and
R5003 T7434 T7441 arg1Of and,Binds
R5004 T7437 T7435 arg1Of Show,ChIP
R5005 T7437 T7436 arg1Of Show,Assays
R5006 T7439 T7434 arg2Of Sox6,and
R5007 T7439 T7437 arg1Of Sox6,Show
R5008 T7439 T7438 arg1Of Sox6,that
R5009 T7441 T7440 arg1Of Binds,Directly
R5010 T7441 T7442 arg1Of Binds,to
R5011 T7445 T7442 arg2Of Promoter,to
R5012 T7445 T7443 arg1Of Promoter,the
R5013 T7445 T7444 arg1Of Promoter,ɛy
R5014 T7446 T7447 arg1Of Sox6,might
R5015 T7446 T7448 arg1Of Sox6,repress
R5016 T7446 T7463 arg1Of Sox6,regulating
R5017 T7448 T7447 arg2Of repress,might
R5018 T7448 T7452 arg1Of repress,","
R5019 T7448 T7454 arg1Of repress,through
R5020 T7448 T7462 arg1Of repress,by
R5021 T7451 T7448 arg2Of promoter,repress
R5022 T7451 T7449 arg1Of promoter,the
R5023 T7451 T7450 arg1Of promoter,ɛy
R5024 T7454 T7461 arg1Of through,or
R5025 T7457 T7454 arg2Of contact,through
R5026 T7457 T7455 arg1Of contact,direct
R5027 T7457 T7456 arg1Of contact,physical
R5028 T7457 T7458 arg1Of contact,with
R5029 T7460 T7458 arg2Of promoter,with
R5030 T7460 T7459 arg1Of promoter,the
R5031 T7461 T7453 arg1Of or,either
R5032 T7462 T7461 arg2Of by,or
R5033 T7463 T7462 arg2Of regulating,by
R5034 T7464 T7463 arg2Of intermediates,regulating
R5035 T7464 T7465 arg1Of intermediates,affecting
R5036 T7468 T7465 arg2Of promoter,affecting
R5037 T7468 T7466 arg1Of promoter,the
R5038 T7468 T7467 arg1Of promoter,ɛy
R5039 T7470 T7469 arg1Of investigate,To
R5040 T7472 T7473 arg1Of Sox6,is
R5041 T7472 T7475 arg2Of Sox6,associated
R5042 T7475 T7470 arg2Of associated,investigate
R5043 T7475 T7471 arg1Of associated,whether
R5044 T7475 T7473 arg2Of associated,is
R5045 T7475 T7474 arg1Of associated,directly
R5046 T7475 T7476 arg1Of associated,with
R5047 T7479 T7476 arg2Of promoter,with
R5048 T7479 T7477 arg1Of promoter,the
R5049 T7479 T7478 arg1Of promoter,ɛy
R5050 T7481 T7470 arg1Of we,investigate
R5051 T7481 T7483 arg1Of we,performed
R5052 T7481 T7491 arg1Of we,using
R5053 T7483 T7469 modOf performed,To
R5054 T7483 T7480 arg1Of performed,","
R5055 T7483 T7482 arg1Of performed,first
R5056 T7483 T7491 modOf performed,using
R5057 T7487 T7483 arg2Of assays,performed
R5058 T7487 T7484 arg1Of assays,electrophoretic
R5059 T7487 T7485 arg1Of assays,mobility
R5060 T7487 T7486 arg1Of assays,shift
R5061 T7487 T7488 arg1Of assays,(
R5062 T7489 T7488 arg2Of EMSA,(
R5063 T7490 T7488 arg3Of ),(
R5064 T7494 T7491 arg2Of Sox6,using
R5065 T7494 T7492 arg1Of Sox6,a
R5066 T7494 T7493 arg1Of Sox6,c-Myc-tagged
R5067 T7494 T7495 arg1Of Sox6,in
R5068 T7501 T7500 arg1Of vitro,in
R5069 T7502 T7495 arg2Of system,in
R5070 T7502 T7496 arg1Of system,a
R5071 T7502 T7497 arg1Of system,reticulocyte
R5072 T7502 T7498 arg1Of system,lysate-based
R5073 T7502 T7499 arg1Of system,transcription/translation
R5074 T7502 T7501 arg1Of system,vitro
R5075 T7504 T7503 arg1Of probes,The
R5076 T7504 T7505 arg2Of probes,used
R5077 T7504 T7506 arg1Of probes,are
R5078 T7504 T7507 arg2Of probes,listed
R5079 T7507 T7506 arg2Of listed,are
R5080 T7507 T7508 arg1Of listed,in
R5081 T7510 T7508 arg2Of 3A,in
R5082 T7510 T7509 arg1Of 3A,Figure
R5083 T7513 T7512 arg1Of pair,36–base
R5084 T7513 T7514 arg1Of pair,(
R5085 T7515 T7514 arg2Of bp,(
R5086 T7516 T7514 arg3Of ),(
R5087 T7518 T7511 arg1Of probe,The
R5088 T7518 T7513 arg1Of probe,pair
R5089 T7518 T7517 arg1Of probe,WT
R5090 T7518 T7519 arg1Of probe,corresponds
R5091 T7519 T7520 arg1Of corresponds,to
R5092 T7523 T7520 arg2Of region,to
R5093 T7523 T7521 arg1Of region,the
R5094 T7523 T7522 arg1Of region,critical
R5095 T7523 T7524 arg1Of region,of
R5096 T7527 T7524 arg2Of promoter,of
R5097 T7527 T7525 arg1Of promoter,the
R5098 T7527 T7526 arg1Of promoter,ɛy
R5099 T7527 T7528 arg2Of promoter,defined
R5100 T7528 T7529 arg1Of defined,in
R5101 T7533 T7529 arg2Of analyses,in
R5102 T7533 T7530 arg1Of analyses,our
R5103 T7533 T7531 arg1Of analyses,promoter
R5104 T7533 T7532 arg1Of analyses,deletion
R5105 T7535 T7534 arg1Of probe,This
R5106 T7535 T7536 arg1Of probe,contains
R5107 T7541 T7536 arg2Of sites,contains
R5108 T7541 T7537 arg1Of sites,two
R5109 T7541 T7538 arg1Of sites,consensus
R5110 T7541 T7539 arg1Of sites,Sox/Sox6
R5111 T7541 T7540 arg1Of sites,binding
R5112 T7543 T7542 arg1Of included,Also
R5113 T7543 T7544 arg1Of included,in
R5114 T7543 T7547 arg2Of included,are
R5115 T7643 T7641 arg2Of probe,to
R5116 T7643 T7642 arg1Of probe,the
R5117 T7647 T7645 arg1Of Sox6,an
R5118 T7647 T7646 arg1Of Sox6,HA-tagged
R5119 T7647 T7648 arg1Of Sox6,was
R5120 T7647 T7649 arg2Of Sox6,used
R5121 T7649 T7630 modOf used,To
R5122 T7649 T7644 arg1Of used,","
R5123 T7649 T7648 arg2Of used,was
R5124 T7649 T7650 arg1Of used,in
R5125 T7652 T7650 arg2Of EMSA,in
R5126 T7652 T7651 arg1Of EMSA,another
R5127 T7652 T7653 arg1Of EMSA,that
R5128 T7652 T7654 arg1Of EMSA,confirmed
R5129 T7656 T7654 arg2Of results,confirmed
R5130 T7656 T7655 arg1Of results,these
R5131 T7656 T7657 arg1Of results,(
R5132 T7659 T7657 arg2Of 3C,(
R5133 T7659 T7658 arg1Of 3C,Figure
R5134 T7660 T7657 arg3Of ),(
R5135 T7664 T7663 arg1Of extracts,nuclear
R5136 T7546 T7544 arg2Of EMSA,in
R5137 T7546 T7545 arg1Of EMSA,our
R5138 T7664 T7665 arg1Of extracts,from
R5139 T7664 T7668 arg1Of extracts,were
R5140 T7664 T7669 arg2Of extracts,used
R5141 T7550 T7543 arg2Of probes,included
R5142 T7550 T7547 arg1Of probes,are
R5143 T7550 T7548 arg1Of probes,three
R5144 T7550 T7549 arg2Of probes,mutated
R5145 T7550 T7551 arg1Of probes,that
R5146 T7550 T7552 arg1Of probes,are
R5147 T7667 T7665 arg2Of cells,from
R5148 T7552 T7553 arg1Of are,","
R5149 T7552 T7554 arg1Of are,either
R5150 T7555 T7556 arg1Of truncated,(
R5151 T7555 T7560 arg1Of truncated,or
R5152 T7557 T7556 arg2Of M1,(
R5153 T7558 T7556 arg3Of ),(
R5154 T7560 T7552 arg2Of or,are
R5155 T7560 T7559 arg1Of or,","
R5156 T7560 T7567 arg1Of or,in
R5157 T7667 T7666 arg1Of cells,MEL
R5158 T7563 T7564 arg1Of M2,and
R5159 T7669 T7661 arg1Of used,Next
R5160 T7564 T7560 arg2Of and,or
R5161 T7564 T7561 arg1Of and,mutated
R5162 T7564 T7562 arg2Of and,(
R5163 T7565 T7564 arg2Of M3,and
R5164 T7566 T7562 arg3Of ),(
R5165 T7669 T7662 arg1Of used,","
R5166 T7669 T7668 arg2Of used,were
R5167 T7669 T7670 arg1Of used,in
R5168 T7570 T7567 arg2Of sites,in
R5169 T7570 T7568 arg1Of sites,Sox/Sox6
R5170 T7570 T7569 arg1Of sites,binding
R5171 T7570 T7571 arg1Of sites,(
R5172 T7671 T7670 arg2Of EMSA,in
R5173 T7573 T7571 arg2Of 3A,(
R5174 T7573 T7572 arg1Of 3A,Figure
R5175 T7574 T7571 arg3Of ),(
R5176 T7575 T7576 arg1Of Sox6,is
R5177 T7575 T7577 arg1Of Sox6,able
R5178 T7575 T7580 arg1Of Sox6,associate
R5179 T7671 T7672 arg1Of EMSA,employing
R5180 T7577 T7576 arg2Of able,is
R5181 T7676 T7672 arg2Of probe,employing
R5182 T7580 T7577 arg2Of associate,able
R5183 T7580 T7578 arg1Of associate,to
R5184 T7580 T7579 arg1Of associate,physically
R5185 T7580 T7581 arg1Of associate,with
R5186 T7584 T7581 arg2Of region,with
R5187 T7584 T7582 arg1Of region,the
R5188 T7584 T7583 arg1Of region,36-bp
R5189 T7584 T7585 arg1Of region,(
R5190 T7584 T7589 arg1Of region,within
R5191 T7676 T7673 arg1Of probe,the
R5192 T7587 T7585 arg2Of 3B,(
R5193 T7587 T7586 arg1Of 3B,Figure
R5194 T7676 T7674 arg1Of probe,same
R5195 T7588 T7585 arg3Of ),(
R5196 T7676 T7675 arg1Of probe,36-bp
R5197 T7678 T7677 arg1Of cells,MEL
R5198 T7592 T7589 arg2Of promoter,within
R5199 T7592 T7590 arg1Of promoter,the
R5200 T7592 T7591 arg1Of promoter,ɛy
R5201 T7592 T7593 arg2Of promoter,defined
R5202 T7598 T7593 arg1Of experiments,defined
R5203 T7598 T7594 arg2Of experiments,by
R5204 T7598 T7595 arg1Of experiments,the
R5205 T7598 T7596 arg1Of experiments,deletion
R5206 T7598 T7597 arg1Of experiments,analysis
R5207 T7598 T7599 arg1Of experiments,(
R5208 T7678 T7679 arg1Of cells,","
R5209 T7678 T7686 arg1Of cells,express
R5210 T7601 T7599 arg2Of 2C,(
R5211 T7601 T7600 arg1Of 2C,Figure
R5212 T7602 T7599 arg3Of ),(
R5213 T7678 T7693 arg1Of cells,ɛy
R5214 T7684 T7679 arg2Of line,","
R5215 T7605 T7603 arg1Of probe,The
R5216 T7605 T7604 arg1Of probe,36-bp
R5217 T7605 T7606 arg1Of probe,was
R5218 T7605 T7607 arg2Of probe,shifted
R5219 T7607 T7606 arg2Of shifted,was
R5220 T7684 T7680 arg1Of line,a
R5221 T7684 T7681 arg1Of line,murine
R5222 T7684 T7682 arg1Of line,erythroleukemic
R5223 T7684 T7683 arg1Of line,cell
R5224 T7686 T7691 arg1Of express,but
R5225 T7612 T7607 arg1Of protein,shifted
R5226 T7612 T7608 arg2Of protein,by
R5227 T7612 T7609 arg1Of protein,the
R5228 T7612 T7610 arg2Of protein,tagged
R5229 T7612 T7611 arg1Of protein,Sox6
R5230 T7616 T7617 arg1Of c-Myc,and
R5231 T7689 T7686 arg2Of globins,express
R5232 T7617 T7615 arg1Of and,both
R5233 T7618 T7617 arg2Of Sox6,and
R5234 T7619 T7616 arg1Of antibodies,c-Myc
R5235 T7619 T7618 arg1Of antibodies,Sox6
R5236 T7619 T7620 arg1Of antibodies,supershift
R5237 T7620 T7613 arg1Of supershift,Moreover
R5238 T7620 T7614 arg1Of supershift,","
R5239 T7620 T7623 arg1Of supershift,","
R5240 T7620 T7624 modOf supershift,indicating
R5241 T7622 T7620 arg2Of band,supershift
R5242 T7622 T7621 arg1Of band,the
R5243 T7689 T7687 arg1Of globins,adult
R5244 T7689 T7688 arg1Of globins,β
R5245 T7691 T7685 arg1Of but,","
R5246 T7627 T7626 arg1Of binding,the
R5247 T7627 T7628 arg1Of binding,is
R5248 T7627 T7629 arg1Of binding,Sox6-specific
R5249 T7628 T7624 arg2Of is,indicating
R5250 T7628 T7625 arg1Of is,that
R5251 T7629 T7628 arg2Of Sox6-specific,is
R5252 T7631 T7630 arg1Of rule,To
R5253 T7631 T7632 arg1Of rule,out
R5254 T7691 T7690 arg1Of but,","
R5255 T7634 T7631 arg2Of possibility,rule
R5256 T7634 T7633 arg1Of possibility,the
R5257 T7691 T7692 arg1Of but,not
R5258 T7693 T7691 arg2Of ɛy,but
R5259 T7638 T7636 arg1Of tag,the
R5260 T7638 T7637 arg1Of tag,c-Myc
R5261 T7639 T7638 arg1Of itself,tag
R5262 T7639 T7640 arg1Of itself,binds
R5263 T7640 T7634 arg2Of binds,possibility
R5264 T7640 T7635 arg1Of binds,that
R5265 T7640 T7641 arg1Of binds,to
R5266 T7693 T7694 arg1Of ɛy,[
R5267 T7695 T7694 arg2Of 33,[
R5268 T7696 T7694 arg3Of ],[
R5269 T7697 T7699 arg1Of Sox6,binds
R5270 T7699 T7698 arg1Of binds,directly
R5271 T7699 T7700 arg1Of binds,to
R5272 T7703 T7700 arg2Of sequence,to
R5273 T7742 T7738 arg2Of sites,of
R5274 T7742 T7739 arg1Of sites,putative
R5275 T7742 T7740 arg1Of sites,Sox/Sox6
R5276 T7742 T7741 arg1Of sites,binding
R5277 T7742 T7743 arg1Of sites,(
R5278 T7744 T7745 arg1Of M1,and
R5279 T7745 T7743 arg2Of and,(
R5280 T7746 T7745 arg2Of M3,and
R5281 T7703 T7701 arg1Of sequence,this
R5282 T7747 T7743 arg3Of ),(
R5283 T7703 T7702 arg1Of sequence,DNA
R5284 T7703 T7704 arg1Of sequence,in
R5285 T7706 T7704 arg2Of cells,in
R5286 T7750 T7748 arg2Of ability,abolish
R5287 T7750 T7749 arg1Of ability,their
R5288 T7750 T7751 modOf ability,to
R5289 T7752 T7751 arg1Of compete,to
R5290 T7752 T7753 arg1Of compete,in
R5291 T7706 T7705 arg1Of cells,MEL
R5292 T7706 T7707 arg1Of cells,(
R5293 T7709 T7707 arg2Of 3D,(
R5294 T7754 T7753 arg2Of EMSA,in
R5295 T7754 T7755 arg1Of EMSA,(
R5296 T7709 T7708 arg1Of 3D,Figure
R5297 T7757 T7755 arg2Of 3E,(
R5298 T7757 T7756 arg1Of 3E,Figure
R5299 T7758 T7755 arg3Of ),(
R5300 T7710 T7707 arg3Of ),(
R5301 T7762 T7759 arg1Of probe,The
R5302 T7762 T7760 arg1Of probe,M2
R5303 T7762 T7761 arg1Of probe,mutant
R5304 T7762 T7763 arg1Of probe,may
R5305 T7762 T7764 arg1Of probe,compete
R5306 T7764 T7763 arg2Of compete,may
R5307 T7764 T7765 arg1Of compete,partially
R5308 T7764 T7766 arg1Of compete,with
R5309 T7716 T7711 arg1Of sites,The
R5310 T7768 T7766 arg2Of binding,with
R5311 T7768 T7767 arg1Of binding,WT
R5312 T7770 T7769 arg1Of investigate,To
R5313 T7773 T7770 arg2Of significance,investigate
R5314 T7773 T7771 arg1Of significance,the
R5315 T7773 T7772 arg1Of significance,functional
R5316 T7773 T7774 arg1Of significance,of
R5317 T7716 T7712 arg1Of sites,intact
R5318 T7716 T7713 arg1Of sites,consensus
R5319 T7716 T7714 arg1Of sites,Sox/Sox6
R5320 T7716 T7715 arg1Of sites,binding
R5321 T7716 T7717 arg1Of sites,of
R5322 T7779 T7774 arg2Of sites,of
R5323 T7779 T7775 arg1Of sites,the
R5324 T7779 T7776 arg1Of sites,intact
R5325 T7779 T7777 arg1Of sites,Sox/Sox6
R5326 T7779 T7778 arg1Of sites,binding
R5327 T7716 T7721 arg1Of sites,are
R5328 T7716 T7722 arg2Of sites,required
R5329 T7720 T7717 arg2Of probe,of
R5330 T7785 T7781 arg1Of constructs,the
R5331 T7785 T7782 arg1Of constructs,ɛy
R5332 T7785 T7783 arg1Of constructs,promoter
R5333 T7785 T7784 arg1Of constructs,reporter
R5334 T7785 T7786 arg1Of constructs,with
R5335 T7785 T7791 arg1Of constructs,were
R5336 T7785 T7792 arg2Of constructs,co-transfected
R5337 T7790 T7786 arg2Of sites,with
R5338 T7790 T7787 arg2Of sites,mutagenized
R5339 T7790 T7788 arg1Of sites,Sox/Sox6
R5340 T7790 T7789 arg1Of sites,binding
R5341 T7720 T7718 arg1Of probe,the
R5342 T7792 T7769 modOf co-transfected,To
R5343 T7792 T7780 arg1Of co-transfected,","
R5344 T7792 T7791 arg2Of co-transfected,were
R5345 T7792 T7793 arg1Of co-transfected,with
R5346 T7720 T7719 arg1Of probe,DNA
R5347 T7722 T7721 arg2Of required,are
R5348 T7797 T7793 arg2Of vector,with
R5349 T7797 T7794 arg1Of vector,the
R5350 T7797 T7795 arg1Of vector,Sox6
R5351 T7797 T7796 arg1Of vector,overexpression
R5352 T7797 T7798 arg1Of vector,into
R5353 T7800 T7798 arg2Of cells,into
R5354 T7800 T7799 arg1Of cells,GM979
R5355 T7801 T7802 arg1Of Consistent,with
R5356 T7722 T7723 arg1Of required,for
R5357 T7722 T7726 arg1Of required,","
R5358 T7805 T7802 arg2Of results,with
R5359 T7805 T7803 arg1Of results,the
R5360 T7805 T7804 arg1Of results,EMSA
R5361 T7722 T7727 arg1Of required,as
R5362 T7725 T7723 arg2Of binding,for
R5363 T7725 T7724 arg1Of binding,the
R5364 T7812 T7807 arg1Of constructs,the
R5365 T7812 T7808 arg1Of constructs,mutant
R5366 T7812 T7809 arg1Of constructs,ɛy
R5367 T7812 T7810 arg1Of constructs,promoter
R5368 T7812 T7811 arg1Of constructs,reporter
R5369 T7812 T7813 arg1Of constructs,(
R5370 T7812 T7824 arg1Of constructs,do
R5371 T7812 T7826 arg1Of constructs,result
R5372 T7814 T7813 arg2Of with,(
R5373 T7728 T7727 arg2Of shown,as
R5374 T7728 T7729 arg1Of shown,in
R5375 T7732 T7729 arg2Of assay,in
R5376 T7821 T7814 arg2Of sites,with
R5377 T7821 T7815 arg1Of sites,either
R5378 T7821 T7816 arg1Of sites,one
R5379 T7821 T7817 arg1Of sites,or
R5380 T7821 T7818 arg1Of sites,both
R5381 T7821 T7819 arg1Of sites,Sox/Sox6
R5382 T7821 T7820 arg1Of sites,binding
R5383 T7821 T7822 arg2Of sites,mutagenized
R5384 T7823 T7813 arg3Of ),(
R5385 T7826 T7801 arg1Of result,Consistent
R5386 T7826 T7806 arg1Of result,","
R5387 T7826 T7824 arg2Of result,do
R5388 T7826 T7825 arg1Of result,not
R5389 T7826 T7827 arg1Of result,in
R5390 T7830 T7827 arg2Of repression,in
R5391 T7732 T7730 arg1Of assay,the
R5392 T7732 T7731 arg1Of assay,competition
R5393 T7732 T7733 arg1Of assay,(
R5394 T7735 T7733 arg2Of 3E,(
R5395 T7830 T7828 arg1Of repression,significant
R5396 T7830 T7829 arg1Of repression,promoter
R5397 T7830 T7831 arg1Of repression,in
R5398 T7833 T7831 arg2Of studies,in
R5399 T7833 T7832 arg1Of studies,transfection
R5400 T7833 T7834 arg1Of studies,(
R5401 T7836 T7834 arg2Of 3F,(
R5402 T7836 T7835 arg1Of 3F,Figure
R5403 T7735 T7734 arg1Of 3E,Figure
R5404 T7736 T7733 arg3Of ),(
R5405 T7737 T7738 arg1Of Ablation,of
R5406 T7737 T7748 arg1Of Ablation,abolish
R5407 T7935 T7933 arg1Of data,The
R5408 T7837 T7834 arg3Of ),(
R5409 T7935 T7934 arg1Of data,above
R5410 T7841 T7840 arg1Of sites,both
R5411 T7841 T7842 arg1Of sites,are
R5412 T7841 T7843 arg2Of sites,required
R5413 T7935 T7936 arg1Of data,(
R5414 T7935 T7943 arg1Of data,indicate
R5415 T7843 T7838 arg1Of required,Thus
R5416 T7843 T7839 arg1Of required,","
R5417 T7843 T7842 arg2Of required,are
R5418 T7843 T7844 arg1Of required,for
R5419 T7843 T7854 arg1Of required,to
R5420 T7844 T7852 arg1Of for,but
R5421 T7938 T7939 arg1Of 3,and
R5422 T7846 T7844 arg2Of repression,for
R5423 T7846 T7845 arg1Of repression,maximal
R5424 T7846 T7847 arg1Of repression,of
R5425 T7846 T7849 arg1Of repression,by
R5426 T7848 T7847 arg2Of ɛy,of
R5427 T7850 T7849 arg2Of Sox6,by
R5428 T7939 T7936 arg2Of and,(
R5429 T7852 T7851 arg1Of but,","
R5430 T7939 T7937 arg1Of and,Figures
R5431 T7854 T7852 arg2Of to,but
R5432 T7854 T7853 arg1Of to,not
R5433 T7940 T7939 arg2Of 4,and
R5434 T7857 T7854 arg2Of degree,to
R5435 T7857 T7855 arg1Of degree,the
R5436 T7857 T7856 arg1Of degree,same
R5437 T7941 T7936 arg3Of ),(
R5438 T7858 T7860 arg1Of We,tested
R5439 T7860 T7859 arg1Of tested,also
R5440 T7943 T7942 arg1Of indicate,clearly
R5441 T7862 T7863 arg1Of Sox6,binds
R5442 T7863 T7860 arg2Of binds,tested
R5443 T7863 T7861 arg1Of binds,whether
R5444 T7945 T7946 arg1Of Sox6,acts
R5445 T7946 T7943 arg2Of acts,indicate
R5446 T7863 T7864 arg1Of binds,to
R5447 T7863 T7869 arg1Of binds,vivo
R5448 T7946 T7944 arg1Of acts,that
R5449 T7946 T7947 arg1Of acts,as
R5450 T7867 T7864 arg2Of promoter,to
R5451 T7867 T7865 arg1Of promoter,the
R5452 T7867 T7866 arg1Of promoter,ɛy
R5453 T7869 T7868 arg1Of vivo,in
R5454 T7870 T7863 arg2Of using,binds
R5455 T7872 T7870 arg2Of immunoprecipitation,using
R5456 T7872 T7871 arg1Of immunoprecipitation,chromatin
R5457 T7872 T7873 arg1Of immunoprecipitation,(
R5458 T7872 T7876 arg1Of immunoprecipitation,(
R5459 T7874 T7873 arg2Of ChIP,(
R5460 T7946 T7954 arg1Of acts,by
R5461 T7875 T7873 arg3Of ),(
R5462 T7949 T7947 arg2Of repressor,as
R5463 T7877 T7876 arg2Of Figure,(
R5464 T7877 T7878 arg1Of Figure,4
R5465 T7879 T7876 arg3Of ),(
R5466 T7949 T7948 arg1Of repressor,a
R5467 T7882 T7880 arg1Of complex,The
R5468 T7882 T7881 arg1Of complex,Sox6-containing
R5469 T7882 T7883 arg1Of complex,was
R5470 T7882 T7884 arg2Of complex,immunoprecipitated
R5471 T7884 T7883 arg2Of immunoprecipitated,was
R5472 T7884 T7885 arg1Of immunoprecipitated,from
R5473 T7884 T7889 arg1Of immunoprecipitated,from
R5474 T7949 T7950 arg1Of repressor,of
R5475 T7885 T7888 arg1Of from,or
R5476 T7953 T7950 arg2Of gene,of
R5477 T7887 T7885 arg2Of cells,from
R5478 T7887 T7886 arg1Of cells,MEL
R5479 T7889 T7888 arg2Of from,or
R5480 T7891 T7889 arg2Of cells,from
R5481 T7891 T7890 arg1Of cells,liver
R5482 T7891 T7892 arg1Of cells,of
R5483 T7953 T7951 arg1Of gene,the
R5484 T7953 T7952 arg1Of gene,ɛy
R5485 T7956 T7954 arg2Of binding,by
R5486 T7896 T7892 arg2Of mice,of
R5487 T7896 T7893 arg1Of mice,15.5
R5488 T7896 T7894 arg1Of mice,dpc
R5489 T7896 T7895 arg1Of mice,WT
R5490 T7896 T7897 arg1Of mice,using
R5491 T7956 T7955 arg1Of binding,directly
R5492 T7956 T7957 arg1Of binding,to
R5493 T7899 T7897 arg2Of antibody,using
R5494 T7899 T7898 arg1Of antibody,Sox6
R5495 T7956 T7961 arg1Of binding,","
R5496 T7956 T7963 arg1Of binding,as
R5497 T7960 T7957 arg2Of promoter,to
R5498 T7902 T7900 arg1Of shows,Figure
R5499 T7902 T7901 arg1Of shows,4
R5500 T7902 T7903 arg1Of shows,that
R5501 T7902 T7914 arg1Of shows,in
R5502 T7960 T7958 arg1Of promoter,the
R5503 T7907 T7904 arg1Of promoter,the
R5504 T7907 T7905 arg1Of promoter,ɛy
R5505 T7907 T7906 arg1Of promoter,proximal
R5506 T7907 T7908 arg1Of promoter,is
R5507 T7907 T7910 arg2Of promoter,immunoprecipitated
R5508 T7960 T7959 arg1Of promoter,ɛy
R5509 T7963 T7962 arg1Of as,probably
R5510 T7910 T7903 arg2Of immunoprecipitated,that
R5511 T7910 T7908 arg2Of immunoprecipitated,is
R5512 T7910 T7909 arg1Of immunoprecipitated,readily
R5513 T7910 T7911 arg1Of immunoprecipitated,with
R5514 T7913 T7911 arg2Of antibody,with
R5515 T7913 T7912 arg1Of antibody,Sox6
R5516 T7965 T7963 arg2Of dimer,as
R5517 T7917 T7916 arg1Of cells,MEL
R5518 T7917 T7918 arg1Of cells,and
R5519 T7918 T7914 arg2Of and,in
R5520 T7918 T7915 arg1Of and,both
R5521 T7920 T7918 arg2Of cells,and
R5522 T7920 T7919 arg1Of cells,liver
R5523 T7965 T7964 arg1Of dimer,a
R5524 T7922 T7921 arg1Of IgG,Normal
R5525 T7922 T7923 arg1Of IgG,was
R5526 T7922 T7924 arg2Of IgG,used
R5528 T7924 T7923 arg2Of used,was
R5529 T7924 T7925 arg1Of used,as
R5530 T7928 T7925 arg2Of control,as
R5531 T7928 T7926 arg1Of control,a
R5532 T7928 T7927 arg1Of control,negative
R5533 T7928 T7929 arg1Of control,(
R5534 T7931 T7929 arg2Of 4A,(
R5535 T7931 T7930 arg1Of 4A,Figure
R5536 T7932 T7929 arg3Of ),(

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T7238 2190-2212 Antecedent denotes Sox/Sox6 binding sites
T7237 2318-2328 Anaphor denotes both sites
T7236 877-889 Antecedent denotes 36-bp region
T7235 1506-1523 Anaphor denotes this DNA sequence
R4979 T7235 T7236 boundBy this DNA sequence,36-bp region
R4980 T7237 T7238 boundBy both sites,Sox/Sox6 binding sites

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7272 2890-2894 Protein denotes Sox6
T7271 2731-2735 Protein denotes Sox6
T7270 2675-2677 Protein denotes ɛy
T7269 2636-2640 Protein denotes Sox6
T7268 2528-2532 Protein denotes Sox6
T7267 2449-2451 Protein denotes ɛy
T7266 2431-2435 Protein denotes Sox6
T7265 2374-2378 Protein denotes Sox6
T7264 2368-2370 Protein denotes ɛy
T7263 2133-2135 Protein denotes ɛy
T7262 2043-2047 Protein denotes Sox6
T7261 1942-1944 Protein denotes ɛy
T7260 1483-1487 Protein denotes Sox6
T7259 1474-1476 Protein denotes ɛy
T7258 1455-1464 Protein denotes β globins
T7257 1234-1238 Protein denotes Sox6
T7256 1224-1226 Protein denotes HA
T7255 1184-1189 Protein denotes c-Myc
T7254 1132-1136 Protein denotes Sox6
T7253 1064-1068 Protein denotes Sox6
T7252 1054-1059 Protein denotes c-Myc
T7251 1025-1029 Protein denotes Sox6
T7250 913-915 Protein denotes ɛy
T7249 831-835 Protein denotes Sox6
T7248 572-574 Protein denotes ɛy
T7247 379-383 Protein denotes Sox6
T7246 366-371 Protein denotes c-Myc
T7245 281-283 Protein denotes ɛy
T7244 244-248 Protein denotes Sox6
T7243 208-210 Protein denotes ɛy
T7242 93-95 Protein denotes ɛy
T7241 70-74 Protein denotes Sox6
T7240 58-60 Protein denotes ɛy
T7239 31-35 Protein denotes Sox6
T7274 2957-2959 Protein denotes ɛy
T7273 2922-2924 Protein denotes ɛy

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7974 1064-1068 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7973 1025-1029 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7972 831-835 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7971 799-803 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7970 665-669 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7969 379-383 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7968 244-248 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7967 70-74 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7966 31-35 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7989 2890-2894 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7988 2731-2735 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7987 2636-2640 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7986 2528-2532 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7985 2431-2435 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7984 2374-2378 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7983 2194-2198 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7982 2043-2047 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7981 1995-1999 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7980 1918-1922 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7979 1713-1717 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7978 1575-1579 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7977 1483-1487 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7976 1234-1238 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T7975 1132-1136 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T7140 2767-2772 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T7139 2598-2603 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver

GO-BP

Id Subject Object Predicate Lexical cue
T7168 1457-1464 http://purl.obolibrary.org/obo/GO_0005344 denotes globins
T7167 429-440 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T7166 415-428 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T7275 670-677 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7289 1457-1464 http://purl.obolibrary.org/obo/GO_0005344 denotes globins
T7288 2736-2744 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T7287 2641-2649 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody
T7286 1069-1079 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T7285 2942-2949 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7284 2199-2206 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7283 2000-2007 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7282 1923-1930 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7281 1848-1855 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7280 1718-1725 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7279 1632-1639 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7278 1580-1587 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7277 1121-1128 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T7276 804-811 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T7304 2475-2484 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T7303 2773-2778 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7302 2757-2762 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7301 2604-2609 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7300 2584-2589 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7299 2081-2086 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7298 1531-1536 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7297 1398-1403 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7296 1338-1343 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T7295 2736-2744 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T7294 2641-2649 http://purl.obolibrary.org/obo/GO_0042571 denotes antibody
T7293 1069-1079 http://purl.obolibrary.org/obo/GO_0042571 denotes antibodies
T7292 2736-2744 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T7291 2641-2649 http://purl.obolibrary.org/obo/GO_0019815 denotes antibody
T7290 1069-1079 http://purl.obolibrary.org/obo/GO_0019815 denotes antibodies

sentences

Id Subject Object Predicate Lexical cue
T7165 2835-2990 Sentence denotes The above data (Figures 3 and 4) clearly indicate that Sox6 acts as a repressor of the ɛy gene by directly binding to the ɛy promoter, probably as a dimer.
T7164 2780-2834 Sentence denotes Normal IgG was used as a negative control (Figure 4A).
T7163 2651-2779 Sentence denotes Figure 4 shows that the ɛy proximal promoter is readily immunoprecipitated with Sox6 antibody in both MEL cells and liver cells.
T7162 2524-2650 Sentence denotes The Sox6-containing complex was immunoprecipitated from MEL cells or from liver cells of 15.5 dpc WT mice using Sox6 antibody.
T7161 2408-2523 Sentence denotes We also tested whether Sox6 binds to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP) (Figure 4).
T7160 2312-2407 Sentence denotes Thus, both sites are required for maximal repression of ɛy by Sox6, but not to the same degree.
T7159 2088-2311 Sentence denotes Consistent with the EMSA results, the mutant ɛy promoter reporter constructs (with either one or both Sox/Sox6 binding sites mutagenized) do not result in significant promoter repression in transfection studies (Figure 3F).
T7158 1857-2087 Sentence denotes To investigate the functional significance of the intact Sox/Sox6 binding sites, the ɛy promoter reporter constructs with mutagenized Sox/Sox6 binding sites were co-transfected with the Sox6 overexpression vector into GM979 cells.
T7157 1798-1856 Sentence denotes The M2 mutant probe may compete partially with WT binding.
T7156 1688-1797 Sentence denotes Ablation of putative Sox/Sox6 binding sites (M1 and M3) abolish their ability to compete in EMSA (Figure 3E).
T7155 1550-1687 Sentence denotes The intact consensus Sox/Sox6 binding sites of the DNA probe are required for the binding, as shown in the competition assay (Figure 3E).
T7154 1483-1549 Sentence denotes Sox6 directly binds to this DNA sequence in MEL cells (Figure 3D).
T7153 1394-1482 Sentence denotes MEL cells, a murine erythroleukemic cell line, express adult β globins, but not ɛy [33].
T7152 1306-1393 Sentence denotes Next, nuclear extracts from MEL cells were used in EMSA employing the same 36-bp probe.
T7151 1147-1305 Sentence denotes To rule out the possibility that the c-Myc tag itself binds to the probe, an HA-tagged Sox6 was used in another EMSA that confirmed these results (Figure 3C).
T7150 1039-1146 Sentence denotes Moreover, both c-Myc and Sox6 antibodies supershift the band, indicating that the binding is Sox6-specific.
T7149 983-1038 Sentence denotes The 36-bp probe was shifted by the tagged Sox6 protein.
T7148 831-982 Sentence denotes Sox6 is able to physically associate with the 36-bp region (Figure 3B) within the ɛy promoter defined by the deletion analysis experiments (Figure 2C).
T7147 685-830 Sentence denotes Also included in our EMSA are three mutated probes that are, either truncated (M1), or mutated (M2 and M3) in Sox/Sox6 binding sites (Figure 3A).
T7146 627-684 Sentence denotes This probe contains two consensus Sox/Sox6 binding sites.
T7145 499-626 Sentence denotes The 36–base pair (bp) WT probe corresponds to the critical region of the ɛy promoter defined in our promoter deletion analyses.
T7144 458-498 Sentence denotes The probes used are listed in Figure 3A.
T7143 221-457 Sentence denotes To investigate whether Sox6 is directly associated with the ɛy promoter, we first performed electrophoretic mobility shift assays (EMSA) using a c-Myc-tagged Sox6 in a reticulocyte lysate-based transcription/translation in vitro system.
T7142 70-220 Sentence denotes Sox6 might repress the ɛy promoter, either through direct physical contact with the promoter or by regulating intermediates affecting the ɛy promoter.
T7141 0-69 Sentence denotes EMSA and ChIP Assays Show that Sox6 Directly Binds to the ɛy Promoter
T117 0-69 Sentence denotes EMSA and ChIP Assays Show that Sox6 Directly Binds to the ɛy Promoter
T118 70-220 Sentence denotes Sox6 might repress the ɛy promoter, either through direct physical contact with the promoter or by regulating intermediates affecting the ɛy promoter.
T119 221-457 Sentence denotes To investigate whether Sox6 is directly associated with the ɛy promoter, we first performed electrophoretic mobility shift assays (EMSA) using a c-Myc-tagged Sox6 in a reticulocyte lysate-based transcription/translation in vitro system.
T120 458-498 Sentence denotes The probes used are listed in Figure 3A.
T121 499-626 Sentence denotes The 36–base pair (bp) WT probe corresponds to the critical region of the ɛy promoter defined in our promoter deletion analyses.
T122 627-684 Sentence denotes This probe contains two consensus Sox/Sox6 binding sites.
T123 685-830 Sentence denotes Also included in our EMSA are three mutated probes that are, either truncated (M1), or mutated (M2 and M3) in Sox/Sox6 binding sites (Figure 3A).
T124 831-982 Sentence denotes Sox6 is able to physically associate with the 36-bp region (Figure 3B) within the ɛy promoter defined by the deletion analysis experiments (Figure 2C).
T125 983-1038 Sentence denotes The 36-bp probe was shifted by the tagged Sox6 protein.
T126 1039-1146 Sentence denotes Moreover, both c-Myc and Sox6 antibodies supershift the band, indicating that the binding is Sox6-specific.
T127 1147-1305 Sentence denotes To rule out the possibility that the c-Myc tag itself binds to the probe, an HA-tagged Sox6 was used in another EMSA that confirmed these results (Figure 3C).
T128 1306-1393 Sentence denotes Next, nuclear extracts from MEL cells were used in EMSA employing the same 36-bp probe.
T129 1394-1482 Sentence denotes MEL cells, a murine erythroleukemic cell line, express adult β globins, but not ɛy [33].
T130 1483-1549 Sentence denotes Sox6 directly binds to this DNA sequence in MEL cells (Figure 3D).
T131 1550-1687 Sentence denotes The intact consensus Sox/Sox6 binding sites of the DNA probe are required for the binding, as shown in the competition assay (Figure 3E).
T132 1688-1797 Sentence denotes Ablation of putative Sox/Sox6 binding sites (M1 and M3) abolish their ability to compete in EMSA (Figure 3E).
T133 1798-1856 Sentence denotes The M2 mutant probe may compete partially with WT binding.
T134 1857-2087 Sentence denotes To investigate the functional significance of the intact Sox/Sox6 binding sites, the ɛy promoter reporter constructs with mutagenized Sox/Sox6 binding sites were co-transfected with the Sox6 overexpression vector into GM979 cells.
T135 2088-2311 Sentence denotes Consistent with the EMSA results, the mutant ɛy promoter reporter constructs (with either one or both Sox/Sox6 binding sites mutagenized) do not result in significant promoter repression in transfection studies (Figure 3F).
T136 2312-2407 Sentence denotes Thus, both sites are required for maximal repression of ɛy by Sox6, but not to the same degree.
T137 2408-2523 Sentence denotes We also tested whether Sox6 binds to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP) (Figure 4).
T138 2524-2650 Sentence denotes The Sox6-containing complex was immunoprecipitated from MEL cells or from liver cells of 15.5 dpc WT mice using Sox6 antibody.
T139 2651-2779 Sentence denotes Figure 4 shows that the ɛy proximal promoter is readily immunoprecipitated with Sox6 antibody in both MEL cells and liver cells.
T140 2780-2834 Sentence denotes Normal IgG was used as a negative control (Figure 4A).
T141 2835-2990 Sentence denotes The above data (Figures 3 and 4) clearly indicate that Sox6 acts as a repressor of the ɛy gene by directly binding to the ɛy promoter, probably as a dimer.
T142 2991-3011 Sentence denotes Figure 4 ChIP Assay
T143 3012-3111 Sentence denotes MEL cells (A) and 15.5-dpc fetal liver cells (B) were treated as detailed in Materials and Methods.
T144 3112-3333 Sentence denotes 10% of the sample was saved as total input (Inp); remaining samples were divided: plus Sox6 antibody (Ab+), minus Sox6 antibody (Ab−), as well as no DNA (DNA−) and normal rabbit IgG (IgG) that served as negative controls.
T145 3334-3453 Sentence denotes Other controls for these experiments included PCR within the promoter of the α-globin gene and intron 24 of the p gene.
T146 3454-3492 Sentence denotes Both were negative (unpublished data).
T147 3493-3623 Sentence denotes PCR was carried out using primer pairs flanking the Sox/Sox6 binding sites (see Material and Methods) of the ɛy proximal promoter.
T148 3624-3713 Sentence denotes For all reactions, we used 2 μl of immuno-precipitated DNA and 2 μl of 1/100 total input.
T149 3714-3773 Sentence denotes Semiquantitative PCR was done within the exponential range.
T150 3774-3817 Sentence denotes Multiple independent experiments were done.

simple1

Id Subject Object Predicate Lexical cue
T7432 2957-2959 Protein denotes ɛy
T7431 2922-2924 Protein denotes ɛy
T7430 2890-2894 Protein denotes Sox6
T7429 2731-2735 Protein denotes Sox6
T7428 2675-2677 Protein denotes ɛy
T7427 2636-2640 Protein denotes Sox6
T7426 2528-2532 Protein denotes Sox6
T7425 2449-2451 Protein denotes ɛy
T7424 2431-2435 Protein denotes Sox6
T7423 2374-2378 Protein denotes Sox6
T7422 2368-2370 Protein denotes ɛy
T7421 2133-2135 Protein denotes ɛy
T7420 2043-2047 Protein denotes Sox6
T7419 1942-1944 Protein denotes ɛy
T7418 1483-1487 Protein denotes Sox6
T7417 1474-1476 Protein denotes ɛy
T7416 1455-1464 Protein denotes β globins
T7415 1234-1238 Protein denotes Sox6
T7414 1224-1226 Protein denotes HA
T7413 1184-1189 Protein denotes c-Myc
T7412 1132-1136 Protein denotes Sox6
T7411 1064-1068 Protein denotes Sox6
T7410 1054-1059 Protein denotes c-Myc
T7409 1025-1029 Protein denotes Sox6
T7408 913-915 Protein denotes ɛy
T7407 831-835 Protein denotes Sox6
T7406 572-574 Protein denotes ɛy
T7405 379-383 Protein denotes Sox6
T7404 366-371 Protein denotes c-Myc
T7403 281-283 Protein denotes ɛy
T7402 244-248 Protein denotes Sox6
T7401 208-210 Protein denotes ɛy
T7400 93-95 Protein denotes ɛy
T7399 70-74 Protein denotes Sox6
T7398 58-60 Protein denotes ɛy
T7397 31-35 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T8910 2905-2914 Negative_regulation denotes repressor
T8909 2942-2949 Binding denotes binding
T8908 2707-2725 Binding denotes immunoprecipitated
T8907 2436-2441 Binding denotes binds
T8906 2354-2364 Negative_regulation denotes repression
T8905 2333-2341 Positive_regulation denotes required
T8904 2048-2062 Gene_expression denotes overexpression
T8903 1497-1502 Binding denotes binds
T8902 1441-1448 Gene_expression denotes express
T8901 1201-1206 Binding denotes binds
T8900 858-867 Binding denotes associate
T8899 261-271 Binding denotes associated
T8898 169-179 Regulation denotes regulating
T8897 194-203 Regulation denotes affecting
T8896 81-88 Negative_regulation denotes repress
T8895 45-50 Binding denotes Binds
T8894 2957-2959 Protein denotes ɛy
T8893 2922-2924 Protein denotes ɛy
T8892 2890-2894 Protein denotes Sox6
T8891 2731-2735 Protein denotes Sox6
T8890 2675-2677 Protein denotes ɛy
T8889 2636-2640 Protein denotes Sox6
T8888 2528-2532 Protein denotes Sox6
T8887 2449-2451 Protein denotes ɛy
T8886 2431-2435 Protein denotes Sox6
T8885 2374-2378 Protein denotes Sox6
T8884 2368-2370 Protein denotes ɛy
T8883 2133-2135 Protein denotes ɛy
T8882 2043-2047 Protein denotes Sox6
T8881 1942-1944 Protein denotes ɛy
T8880 1483-1487 Protein denotes Sox6
T8879 1474-1476 Protein denotes ɛy
T8878 1455-1464 Protein denotes β globins
T8877 1234-1238 Protein denotes Sox6
T8876 1224-1226 Protein denotes HA
T8875 1184-1189 Protein denotes c-Myc
T8874 1132-1136 Protein denotes Sox6
T8873 1064-1068 Protein denotes Sox6
T8872 1054-1059 Protein denotes c-Myc
T8871 1025-1029 Protein denotes Sox6
T8870 913-915 Protein denotes ɛy
T8869 831-835 Protein denotes Sox6
T8868 572-574 Protein denotes ɛy
T8867 379-383 Protein denotes Sox6
T8866 366-371 Protein denotes c-Myc
T8865 281-283 Protein denotes ɛy
T8864 244-248 Protein denotes Sox6
T8863 208-210 Protein denotes ɛy
T8862 93-95 Protein denotes ɛy
T8861 70-74 Protein denotes Sox6
T8860 58-60 Protein denotes ɛy
T8859 31-35 Protein denotes Sox6
R6203 T8859 T8895 themeOf Sox6,Binds
R6204 T8861 T8898 causeOf Sox6,regulating
R6205 T8862 T8896 themeOf ɛy,repress
R6206 T8863 T8897 themeOf ɛy,affecting
R6207 T8864 T8899 themeOf Sox6,associated
R6208 T8869 T8900 themeOf Sox6,associate
R6209 T8870 T8900 themeOf ɛy,associate
R6210 T8875 T8901 themeOf c-Myc,binds
R6211 T8878 T8902 themeOf β globins,express
R6212 T8880 T8903 themeOf Sox6,binds
R6213 T8882 T8904 themeOf Sox6,overexpression
R6214 T8884 T8906 themeOf ɛy,repression
R6215 T8885 T8906 causeOf Sox6,repression
R6216 T8886 T8907 themeOf Sox6,binds
R6217 T8887 T8907 themeOf ɛy,binds
R6218 T8890 T8908 themeOf ɛy,immunoprecipitated
R6219 T8892 T8909 themeOf Sox6,binding
R6220 T8893 T8910 themeOf ɛy,repressor
R6221 T8893 T8909 themeOf ɛy,binding
R6222 T8894 T8909 themeOf ɛy,binding
R6223 T8894 T8909 themeOf ɛy,binding
R6224 T8897 T8898 themeOf affecting,regulating
R6225 T8906 T8905 themeOf repression,required

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8038 2942-2949 Binding denotes binding
T8037 2436-2441 Binding denotes binds
T8036 2354-2364 Negative_regulation denotes repression
T8035 2333-2341 Positive_regulation denotes required
T8034 2048-2062 Positive_regulation denotes overexpression
T8033 1497-1502 Binding denotes binds
T8032 1441-1448 Gene_expression denotes express
T8031 1201-1206 Binding denotes binds
T8030 858-867 Binding denotes associate
T8029 261-271 Binding denotes associated
T8028 169-179 Regulation denotes regulating
T8027 194-203 Regulation denotes affecting
T8026 45-50 Binding denotes Binds
T8025 2957-2959 Protein denotes ɛy
T8024 2922-2924 Protein denotes ɛy
T8023 2890-2894 Protein denotes Sox6
T8022 2731-2735 Protein denotes Sox6
T8021 2675-2677 Protein denotes ɛy
T8020 2636-2640 Protein denotes Sox6
T8019 2528-2532 Protein denotes Sox6
T8018 2449-2451 Protein denotes ɛy
T8017 2431-2435 Protein denotes Sox6
T8016 2374-2378 Protein denotes Sox6
T8015 2368-2370 Protein denotes ɛy
T8014 2133-2135 Protein denotes ɛy
T8013 2043-2047 Protein denotes Sox6
T8012 1942-1944 Protein denotes ɛy
T8011 1483-1487 Protein denotes Sox6
T8010 1474-1476 Protein denotes ɛy
T8009 1455-1464 Protein denotes β globins
T8008 1234-1238 Protein denotes Sox6
T8007 1224-1226 Protein denotes HA
T8006 1184-1189 Protein denotes c-Myc
T8005 1132-1136 Protein denotes Sox6
T8004 1064-1068 Protein denotes Sox6
T8003 1054-1059 Protein denotes c-Myc
T8002 1025-1029 Protein denotes Sox6
T8001 913-915 Protein denotes ɛy
T8000 831-835 Protein denotes Sox6
T7999 572-574 Protein denotes ɛy
T7998 379-383 Protein denotes Sox6
T7997 366-371 Protein denotes c-Myc
T7996 281-283 Protein denotes ɛy
T7995 244-248 Protein denotes Sox6
T7994 208-210 Protein denotes ɛy
T7993 93-95 Protein denotes ɛy
T7992 70-74 Protein denotes Sox6
T7991 58-60 Protein denotes ɛy
T7990 31-35 Protein denotes Sox6
R5527 T8023 T8038 themeOf Sox6,binding
R5537 T7990 T8026 themeOf Sox6,Binds
R5538 T7992 T8028 causeOf Sox6,regulating
R5539 T8024 T8038 themeOf ɛy,binding
R5540 T8025 T8038 themeOf ɛy,binding
R5541 T7994 T8027 themeOf ɛy,affecting
R5542 T8025 T8038 themeOf ɛy,binding
R5543 T8027 T8028 themeOf affecting,regulating
R5544 T7995 T8029 themeOf Sox6,associated
R5545 T8036 T8035 themeOf repression,required
R5546 T8001 T8030 themeOf ɛy,associate
R5548 T8006 T8031 themeOf c-Myc,binds
R5551 T8010 T8032 themeOf ɛy,express
R5552 T8011 T8033 themeOf Sox6,binds
R5554 T8013 T8034 themeOf Sox6,overexpression
R5556 T8015 T8036 themeOf ɛy,repression
R5558 T8016 T8036 causeOf Sox6,repression
R5560 T8016 T8035 causeOf Sox6,required
R5562 T8017 T8037 themeOf Sox6,binds
R5564 T8018 T8037 themeOf ɛy,binds

DLUT931

Id Subject Object Predicate Lexical cue
T8092 2942-2949 Binding denotes binding
T8091 2905-2914 Negative_regulation denotes repressor
T8090 2436-2441 Binding denotes binds
T8089 2333-2341 Positive_regulation denotes required
T8088 2354-2364 Negative_regulation denotes repression
T8087 2048-2062 Gene_expression denotes overexpression
T8086 2019-2033 Gene_expression denotes co-transfected
T8085 1497-1502 Binding denotes binds
T8084 1441-1448 Gene_expression denotes express
T8083 1227-1233 Binding denotes tagged
T8082 1201-1206 Binding denotes binds
T8081 1121-1128 Binding denotes binding
T8080 858-867 Binding denotes associate
T8079 261-271 Binding denotes associated
T8078 169-179 Regulation denotes regulating
T8077 194-203 Regulation denotes affecting
T8076 137-144 Binding denotes contact
T8075 45-50 Binding denotes Binds
T8074 2957-2959 Protein denotes ɛy
T8073 2922-2924 Protein denotes ɛy
T8072 2890-2894 Protein denotes Sox6
T8071 2731-2735 Protein denotes Sox6
T8070 2675-2677 Protein denotes ɛy
T8069 2636-2640 Protein denotes Sox6
T8068 2528-2532 Protein denotes Sox6
T8067 2449-2451 Protein denotes ɛy
T8066 2431-2435 Protein denotes Sox6
T8065 2374-2378 Protein denotes Sox6
T8064 2368-2370 Protein denotes ɛy
T8063 2133-2135 Protein denotes ɛy
T8062 2043-2047 Protein denotes Sox6
T8061 1942-1944 Protein denotes ɛy
T8060 1483-1487 Protein denotes Sox6
T8059 1474-1476 Protein denotes ɛy
T8058 1455-1464 Protein denotes β globins
T8057 1234-1238 Protein denotes Sox6
T8056 1224-1226 Protein denotes HA
T8055 1184-1189 Protein denotes c-Myc
T8054 1132-1136 Protein denotes Sox6
T8053 1064-1068 Protein denotes Sox6
T8052 1054-1059 Protein denotes c-Myc
T8051 1025-1029 Protein denotes Sox6
T8050 913-915 Protein denotes ɛy
T8049 831-835 Protein denotes Sox6
T8048 572-574 Protein denotes ɛy
T8047 379-383 Protein denotes Sox6
T8046 366-371 Protein denotes c-Myc
T8045 281-283 Protein denotes ɛy
T8044 244-248 Protein denotes Sox6
T8043 208-210 Protein denotes ɛy
T8042 93-95 Protein denotes ɛy
T8041 70-74 Protein denotes Sox6
T8040 58-60 Protein denotes ɛy
T8039 31-35 Protein denotes Sox6
R5547 T8039 T8075 themeOf Sox6,Binds
R5549 T8040 T8075 themeOf ɛy,Binds
R5550 T8042 T8076 themeOf ɛy,contact
R5553 T8043 T8077 themeOf ɛy,affecting
R5555 T8044 T8079 themeOf Sox6,associated
R5557 T8045 T8079 themeOf ɛy,associated
R5559 T8049 T8080 themeOf Sox6,associate
R5561 T8050 T8080 themeOf ɛy,associate
R5563 T8054 T8081 themeOf Sox6,binding
R5565 T8055 T8082 themeOf c-Myc,binds
R5566 T8056 T8083 themeOf HA,tagged
R5567 T8057 T8083 themeOf Sox6,tagged
R5568 T8058 T8084 themeOf β globins,express
R5569 T8059 T8084 themeOf ɛy,express
R5570 T8060 T8085 themeOf Sox6,binds
R5571 T8061 T8086 themeOf ɛy,co-transfected
R5574 T8062 T8087 themeOf Sox6,overexpression
R5575 T8062 T8086 themeOf Sox6,co-transfected
R5576 T8064 T8088 themeOf ɛy,repression
R5578 T8065 T8088 themeOf Sox6,repression
R5580 T8066 T8090 themeOf Sox6,binds
R5582 T8067 T8090 themeOf ɛy,binds
R5583 T8072 T8091 causeOf Sox6,repressor
R5584 T8072 T8092 themeOf Sox6,binding
R5585 T8073 T8091 themeOf ɛy,repressor
R5587 T8073 T8091 themeOf ɛy,repressor
R5588 T8074 T8092 themeOf ɛy,binding
R5590 T8077 T8078 themeOf affecting,regulating
R5593 T8088 T8089 themeOf repression,required
R5599 T8088 T8089 themeOf repression,required
R5601 T8092 T8091 causeOf binding,repressor

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8858 1700-1751 Binding denotes putative Sox/Sox6 binding sites (M1 and M3) abolish
T8857 2408-2511 Binding denotes We also tested whether Sox6 binds to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP)
T8856 2933-2959 Binding denotes directly binding to the ɛy
T8855 1550-1610 Binding denotes The intact consensus Sox/Sox6 binding sites of the DNA probe
T8854 2000-2013 Binding denotes binding sites
T8853 1483-1548 Binding denotes Sox6 directly binds to this DNA sequence in MEL cells (Figure 3D)
T8852 1011-1037 Binding denotes by the tagged Sox6 protein
T8851 647-683 Binding denotes two consensus Sox/Sox6 binding sites
T8850 244-292 Binding denotes Sox6 is directly associated with the ɛy promoter
T8849 0-69 Binding denotes EMSA and ChIP Assays Show that Sox6 Directly Binds to the ɛy Promoter
T8848 1840-1855 Binding denotes with WT binding
T8847 665-669 Protein denotes Sox6
T8846 364-456 Protein denotes a c-Myc-tagged Sox6 in a reticulocyte lysate-based transcription/translation in vitro system
T8845 2185-2212 Entity denotes both Sox/Sox6 binding sites
T8844 281-283 Protein denotes ɛy
T8843 1995-1999 Protein denotes Sox6
T8842 2475-2484 Entity denotes chromatin
T8841 599-607 Entity denotes promoter
T8840 1588-1593 Entity denotes sites
T8839 2950-2959 Protein denotes to the ɛy
T8838 1733-1735 Entity denotes M1
T8837 831-835 Protein denotes Sox6
T8836 2240-2310 Entity denotes in significant promoter repression in transfection studies (Figure 3F)
T8835 781-783 Entity denotes M2
T8834 244-248 Protein denotes Sox6
T8833 2374-2379 Protein denotes Sox6,
T8832 1709-1717 Protein denotes Sox/Sox6
T8831 2043-2047 Protein denotes Sox6
T8830 2613-2649 Protein denotes 15.5 dpc WT mice using Sox6 antibody
T8829 31-35 Protein denotes Sox6
T8828 2449-2451 Protein denotes ɛy
T8827 1713-1717 Protein denotes Sox6
T8826 150-162 Entity denotes the promoter
T8825 572-574 Protein denotes ɛy
T8824 1474-1481 Protein denotes ɛy [33]
T8823 1726-1743 Entity denotes sites (M1 and M3)
T8822 1054-1059 Protein denotes c-Myc
T8821 799-803 Protein denotes Sox6
T8820 1653-1686 Entity denotes the competition assay (Figure 3E)
T8819 1914-1922 Protein denotes Sox/Sox6
T8818 2524-2532 Protein denotes The Sox6
T8817 2000-2013 Entity denotes binding sites
T8816 1511-1514 Entity denotes DNA
T8815 1132-1145 Protein denotes Sox6-specific
T8814 1184-1189 Protein denotes c-Myc
T8813 1991-1999 Protein denotes Sox/Sox6
T8812 1049-1085 Entity denotes both c-Myc and Sox6 antibodies super
T8811 2982-2989 Entity denotes a dimer
T8810 2318-2328 Entity denotes both sites
T8809 2190-2198 Protein denotes Sox/Sox6
T8808 788-790 Entity denotes M3
T8807 2890-2894 Protein denotes Sox6
T8806 2748-2778 Entity denotes both MEL cells and liver cells
T8805 647-683 Entity denotes two consensus Sox/Sox6 binding sites
T8804 764-766 Entity denotes M1
T8803 2918-2929 Protein denotes the ɛy gene
T8802 1064-1068 Protein denotes Sox6
T8801 2431-2435 Protein denotes Sox6
T8800 272-292 Entity denotes with the ɛy promoter
T8799 2442-2511 Entity denotes to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP)
T8798 565-583 Entity denotes of the ɛy promoter
T8797 661-669 Protein denotes Sox/Sox6
T8796 1597-1610 Entity denotes the DNA probe
T8795 1550-1610 Protein denotes The intact consensus Sox/Sox6 binding sites of the DNA probe
T8794 2918-2929 Protein denotes the ɛy gene
T8793 2636-2640 Protein denotes Sox6
T8792 389-401 Entity denotes reticulocyte
T8791 2075-2086 Entity denotes GM979 cells
T8790 1938-1999 Entity denotes the ɛy promoter reporter constructs with mutagenized Sox/Sox6
T8789 2671-2677 Protein denotes the ɛy
T8788 1991-1999 Protein denotes Sox/Sox6
T8787 661-669 Protein denotes Sox/Sox6
T8786 1224-1238 Protein denotes HA-tagged Sox6
T8785 2122-2164 Entity denotes the mutant ɛy promoter reporter constructs
T8784 51-69 Entity denotes to the ɛy Promoter
T8783 2960-2968 Entity denotes promoter
T8782 93-95 Protein denotes ɛy
T8781 180-219 Entity denotes intermediates affecting the ɛy promoter
T8780 1918-1922 Protein denotes Sox6
T8779 2190-2198 Protein denotes Sox/Sox6
T8778 208-210 Protein denotes ɛy
T8777 1449-1481 Protein denotes adult β globins, but not ɛy [33]
T8776 58-60 Protein denotes ɛy
T8775 2726-2744 Entity denotes with Sox6 antibody
T8774 1483-1487 Protein denotes Sox6
T8773 2365-2370 Protein denotes of ɛy
T8772 1802-1804 Entity denotes M2
T8771 2133-2135 Protein denotes ɛy
T8770 909-981 Entity denotes the ɛy promoter defined by the deletion analysis experiments (Figure 2C)
T8769 1011-1037 Protein denotes by the tagged Sox6 protein
T8768 1942-1944 Protein denotes ɛy
T8767 2687-2695 Entity denotes promoter
T8766 2618-2621 Entity denotes dpc
T8765 2731-2735 Protein denotes Sox6
T8764 913-915 Protein denotes ɛy
T8763 795-803 Protein denotes Sox/Sox6
T8762 204-219 Entity denotes the ɛy promoter
T8761 1914-1922 Protein denotes Sox/Sox6
T8760 70-74 Protein denotes Sox6
T8759 795-803 Protein denotes Sox/Sox6
T8758 2636-2649 Protein denotes Sox6 antibody
T8757 1709-1717 Protein denotes Sox/Sox6
T8756 2194-2198 Protein denotes Sox6
T8755 89-105 Entity denotes the ɛy promoter,
T8754 1025-1029 Protein denotes Sox6
R6168 T8755 T8782 partOf "the ɛy promoter,",ɛy
R6170 T8757 T8858 themeOf Sox/Sox6,putative Sox/Sox6 binding sites (M1 and M3) abolish
R6173 T8762 T8778 partOf the ɛy promoter,ɛy
R6177 T8769 T8852 themeOf by the tagged Sox6 protein,by the tagged Sox6 protein
R6178 T8770 T8764 partOf the ɛy promoter defined by the deletion analysis experiments (Figure 2C),ɛy
R6181 T8774 T8853 themeOf Sox6,Sox6 directly binds to this DNA sequence in MEL cells (Figure 3D)
R6186 T8784 T8776 partOf to the ɛy Promoter,ɛy
R6187 T8784 T8849 themeOf to the ɛy Promoter,EMSA and ChIP Assays Show that Sox6 Directly Binds to the ɛy Promoter
R6188 T8785 T8771 partOf the mutant ɛy promoter reporter constructs,ɛy
R6190 T8817 T8854 themeOf binding sites,binding sites
R6191 T8790 T8768 partOf the ɛy promoter reporter constructs with mutagenized Sox/Sox6,ɛy
R6192 T8795 T8855 themeOf The intact consensus Sox/Sox6 binding sites of the DNA probe,The intact consensus Sox/Sox6 binding sites of the DNA probe
R6193 T8798 T8825 partOf of the ɛy promoter,ɛy
R6194 T8799 T8828 partOf to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP),ɛy
R6195 T8799 T8857 themeOf to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP),We also tested whether Sox6 binds to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP)
R6196 T8800 T8844 partOf with the ɛy promoter,ɛy
R6197 T8800 T8850 themeOf with the ɛy promoter,Sox6 is directly associated with the ɛy promoter
R6198 T8801 T8857 themeOf Sox6,We also tested whether Sox6 binds to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP)
R6199 T8829 T8849 themeOf Sox6,EMSA and ChIP Assays Show that Sox6 Directly Binds to the ɛy Promoter
R6200 T8805 T8851 themeOf two consensus Sox/Sox6 binding sites,two consensus Sox/Sox6 binding sites
R6201 T8834 T8850 themeOf Sox6,Sox6 is directly associated with the ɛy promoter
R6202 T8839 T8856 themeOf to the ɛy,directly binding to the ɛy

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8697 2989-2990 . denotes .
T8696 2984-2989 NN denotes dimer
T8695 2982-2983 DT denotes a
T8694 2979-2981 IN denotes as
T8693 2970-2978 RB denotes probably
T8692 2968-2969 , denotes ,
T8691 2960-2968 NN denotes promoter
T8690 2957-2959 JJ denotes ɛy
T8689 2953-2956 DT denotes the
T8688 2950-2952 TO denotes to
T8687 2942-2949 JJ denotes binding
T8686 2933-2941 RB denotes directly
T8685 2930-2932 IN denotes by
T8684 2925-2929 NN denotes gene
T8683 2922-2924 JJ denotes ɛy
T8682 2918-2921 DT denotes the
T8681 2915-2917 IN denotes of
T8680 2905-2914 NN denotes repressor
T8679 2903-2904 DT denotes a
T8678 2900-2902 IN denotes as
T8677 2895-2899 NNS denotes acts
T8676 2890-2894 JJ denotes Sox6
T8675 2885-2889 IN denotes that
T8674 2876-2884 VBP denotes indicate
T8673 2868-2875 RB denotes clearly
T8672 2866-2867 -RRB- denotes )
T8671 2865-2866 CD denotes 4
T8670 2861-2864 CC denotes and
T8669 2859-2860 CD denotes 3
T8668 2851-2858 NNS denotes Figures
T8667 2850-2851 -LRB- denotes (
T8666 2845-2849 NNS denotes data
T8665 2839-2844 IN denotes above
T8664 2835-2838 DT denotes The
T8663 2833-2834 . denotes .
T8662 2832-2833 -RRB- denotes )
T8661 2830-2832 NN denotes 4A
T8660 2823-2829 NN denotes Figure
T8659 2822-2823 -LRB- denotes (
T8658 2814-2821 NN denotes control
T8657 2805-2813 JJ denotes negative
T8656 2803-2804 DT denotes a
T8655 2800-2802 IN denotes as
T8654 2795-2799 VBN denotes used
T8653 2791-2794 VBD denotes was
T8652 2787-2790 NNP denotes IgG
T8651 2780-2786 JJ denotes Normal
T8650 2778-2779 . denotes .
T8649 2773-2778 NNS denotes cells
T8648 2767-2772 NN denotes liver
T8647 2763-2766 CC denotes and
T8646 2757-2762 NNS denotes cells
T8645 2753-2756 NNP denotes MEL
T8644 2748-2752 DT denotes both
T8643 2745-2747 IN denotes in
T8642 2736-2744 NN denotes antibody
T8641 2731-2735 JJ denotes Sox6
T8640 2726-2730 IN denotes with
T8639 2707-2725 VBN denotes immunoprecipitated
T8638 2699-2706 RB denotes readily
T8637 2696-2698 VBZ denotes is
T8636 2687-2695 NN denotes promoter
T8635 2678-2686 JJ denotes proximal
T8634 2675-2677 JJ denotes ɛy
T8633 2671-2674 DT denotes the
T8632 2666-2670 IN denotes that
T8631 2660-2665 NNS denotes shows
T8630 2658-2659 CD denotes 4
T8629 2651-2657 NN denotes Figure
T8628 2649-2650 . denotes .
T8627 2641-2649 NN denotes antibody
T8626 2636-2640 JJ denotes Sox6
T8625 2630-2635 VBG denotes using
T8624 2625-2629 NNS denotes mice
T8623 2622-2624 NNP denotes WT
T8622 2618-2621 NN denotes dpc
T8621 2613-2617 CD denotes 15.5
T8620 2610-2612 IN denotes of
T8619 2604-2609 NNS denotes cells
T8618 2598-2603 NN denotes liver
T8617 2593-2597 IN denotes from
T8616 2590-2592 CC denotes or
T8615 2584-2589 NNS denotes cells
T8614 2580-2583 NNP denotes MEL
T8613 2575-2579 IN denotes from
T8612 2556-2574 VBN denotes immunoprecipitated
T8611 2552-2555 VBD denotes was
T8610 2544-2551 NN denotes complex
T8609 2528-2543 JJ denotes Sox6-containing
T8608 2524-2527 DT denotes The
T8607 2522-2523 . denotes .
T8606 2521-2522 -RRB- denotes )
T8605 2520-2521 CD denotes 4
T8604 2513-2519 NN denotes Figure
T8603 2512-2513 -LRB- denotes (
T8602 2510-2511 -RRB- denotes )
T8601 2506-2510 NNP denotes ChIP
T8600 2505-2506 -LRB- denotes (
T8599 2485-2504 NN denotes immunoprecipitation
T8598 2475-2484 NN denotes chromatin
T8597 2469-2474 VBG denotes using
T8596 2464-2468 NN denotes vivo
T8595 2461-2463 IN denotes in
T8594 2452-2460 NN denotes promoter
T8593 2449-2451 JJ denotes ɛy
T8592 2445-2448 DT denotes the
T8591 2442-2444 TO denotes to
T8590 2436-2441 NNS denotes binds
T8589 2431-2435 JJ denotes Sox6
T8588 2423-2430 IN denotes whether
T8587 2416-2422 VBD denotes tested
T8586 2411-2415 RB denotes also
T8585 2408-2410 PRP denotes We
T8584 2406-2407 . denotes .
T8583 2400-2406 NN denotes degree
T8582 2395-2399 JJ denotes same
T8581 2391-2394 DT denotes the
T8580 2388-2390 TO denotes to
T8579 2384-2387 RB denotes not
T8578 2380-2383 CC denotes but
T8577 2378-2379 , denotes ,
T8576 2374-2378 NNP denotes Sox6
T8575 2371-2373 IN denotes by
T8574 2368-2370 NN denotes ɛy
T8573 2365-2367 IN denotes of
T8572 2354-2364 NN denotes repression
T8571 2346-2353 JJ denotes maximal
T8570 2342-2345 IN denotes for
T8569 2333-2341 VBN denotes required
T8568 2329-2332 VBP denotes are
T8567 2323-2328 NNS denotes sites
T8566 2318-2322 DT denotes both
T8565 2316-2317 , denotes ,
T8564 2312-2316 RB denotes Thus
T8563 2310-2311 . denotes .
T8562 2309-2310 -RRB- denotes )
T8561 2307-2309 CD denotes 3F
T8560 2300-2306 NN denotes Figure
T8559 2299-2300 -LRB- denotes (
T8558 2291-2298 NNS denotes studies
T8557 2278-2290 NN denotes transfection
T8556 2275-2277 IN denotes in
T8555 2264-2274 NN denotes repression
T8554 2255-2263 NN denotes promoter
T8553 2243-2254 JJ denotes significant
T8552 2240-2242 IN denotes in
T8551 2233-2239 VB denotes result
T8550 2229-2232 RB denotes not
T8549 2226-2228 VBP denotes do
T8548 2224-2225 -RRB- denotes )
T8547 2213-2224 VBN denotes mutagenized
T8546 2207-2212 NNS denotes sites
T8545 2199-2206 JJ denotes binding
T8544 2190-2198 JJ denotes Sox/Sox6
T8543 2185-2189 DT denotes both
T8542 2182-2184 CC denotes or
T8541 2178-2181 CD denotes one
T8540 2171-2177 DT denotes either
T8539 2166-2170 IN denotes with
T8538 2165-2166 -LRB- denotes (
T8537 2154-2164 NNS denotes constructs
T8536 2145-2153 NN denotes reporter
T8535 2136-2144 NN denotes promoter
T8534 2133-2135 NN denotes ɛy
T8533 2126-2132 JJ denotes mutant
T8532 2122-2125 DT denotes the
T8531 2120-2121 , denotes ,
T8530 2113-2120 NNS denotes results
T8529 2108-2112 NNP denotes EMSA
T8528 2104-2107 DT denotes the
T8527 2099-2103 IN denotes with
T8526 2088-2098 JJ denotes Consistent
T8525 2086-2087 . denotes .
T8524 2081-2086 NNS denotes cells
T8523 2075-2080 NNP denotes GM979
T8522 2070-2074 IN denotes into
T8521 2063-2069 NN denotes vector
T8520 2048-2062 NN denotes overexpression
T8519 2043-2047 JJ denotes Sox6
T8518 2039-2042 DT denotes the
T8517 2034-2038 IN denotes with
T8516 2019-2033 VBN denotes co-transfected
T8515 2014-2018 VBD denotes were
T8514 2008-2013 NNS denotes sites
T8513 2000-2007 JJ denotes binding
T8512 1991-1999 NNP denotes Sox/Sox6
T8511 1979-1990 VBN denotes mutagenized
T8510 1974-1978 IN denotes with
T8509 1963-1973 NNS denotes constructs
T8508 1954-1962 NN denotes reporter
T8507 1945-1953 NN denotes promoter
T8506 1942-1944 JJ denotes ɛy
T8505 1938-1941 DT denotes the
T8504 1936-1937 , denotes ,
T8503 1931-1936 NNS denotes sites
T8502 1923-1930 JJ denotes binding
T8501 1914-1922 NNP denotes Sox/Sox6
T8500 1907-1913 JJ denotes intact
T8499 1903-1906 DT denotes the
T8498 1900-1902 IN denotes of
T8497 1887-1899 NN denotes significance
T8496 1876-1886 JJ denotes functional
T8495 1872-1875 DT denotes the
T8494 1860-1871 VB denotes investigate
T8493 1857-1859 TO denotes To
T8492 1855-1856 . denotes .
T8491 1848-1855 JJ denotes binding
T8490 1845-1847 NNP denotes WT
T8489 1840-1844 IN denotes with
T8488 1830-1839 RB denotes partially
T8487 1822-1829 VB denotes compete
T8486 1818-1821 MD denotes may
T8221 499-502 DT denotes The
T8220 497-498 . denotes .
T8219 495-497 NN denotes 3A
T8218 488-494 NN denotes Figure
T8217 485-487 IN denotes in
T8216 478-484 VBN denotes listed
T8215 474-477 VBP denotes are
T8214 469-473 VBN denotes used
T8213 462-468 NNS denotes probes
T8212 458-461 DT denotes The
T8211 456-457 . denotes .
T8210 450-456 NN denotes system
T8209 444-449 NN denotes vitro
T8208 441-443 IN denotes in
T8207 415-440 NN denotes transcription/translation
T8206 402-414 JJ denotes lysate-based
T8205 389-401 NN denotes reticulocyte
T8204 387-388 DT denotes a
T8203 384-386 IN denotes in
T8202 379-383 NN denotes Sox6
T8201 366-378 JJ denotes c-Myc-tagged
T8200 364-365 DT denotes a
T8199 358-363 VBG denotes using
T8198 356-357 -RRB- denotes )
T8197 352-356 NNP denotes EMSA
T8196 351-352 -LRB- denotes (
T8195 344-350 NNS denotes assays
T8194 338-343 NN denotes shift
T8193 329-337 NN denotes mobility
T8192 313-328 JJ denotes electrophoretic
T8191 303-312 VBD denotes performed
T8190 297-302 RB denotes first
T8189 294-296 PRP denotes we
T8188 292-293 , denotes ,
T8187 284-292 NN denotes promoter
T8186 281-283 JJ denotes ɛy
T8185 277-280 DT denotes the
T8184 272-276 IN denotes with
T8183 261-271 VBN denotes associated
T8182 252-260 RB denotes directly
T8181 249-251 VBZ denotes is
T8180 244-248 NNP denotes Sox6
T8179 236-243 IN denotes whether
T8178 224-235 VB denotes investigate
T8177 221-223 TO denotes To
T8176 219-220 . denotes .
T8175 211-219 NN denotes promoter
T8174 208-210 JJ denotes ɛy
T8173 204-207 DT denotes the
T8172 194-203 VBG denotes affecting
T8171 180-193 NNS denotes intermediates
T8170 169-179 VBG denotes regulating
T8169 166-168 IN denotes by
T8168 163-165 CC denotes or
T8167 154-162 NN denotes promoter
T8166 150-153 DT denotes the
T8165 145-149 IN denotes with
T8164 137-144 NN denotes contact
T8163 128-136 JJ denotes physical
T8162 121-127 JJ denotes direct
T8161 113-120 IN denotes through
T8160 106-112 CC denotes either
T8159 104-105 , denotes ,
T8158 96-104 NN denotes promoter
T8157 93-95 JJ denotes ɛy
T8156 89-92 DT denotes the
T8155 81-88 VB denotes repress
T8154 75-80 MD denotes might
T8153 70-74 NNP denotes Sox6
T8152 61-69 NNP denotes Promoter
T8151 58-60 NN denotes ɛy
T8150 54-57 DT denotes the
T8149 51-53 TO denotes to
T8148 45-50 VBZ denotes Binds
T8147 36-44 RB denotes Directly
T8146 31-35 NNP denotes Sox6
T8145 26-30 IN denotes that
T8144 21-25 NNP denotes Show
T8143 14-20 NNP denotes Assays
T8142 9-13 NNP denotes ChIP
T8141 5-8 CC denotes and
T8140 0-4 NNP denotes EMSA
T8411 1470-1473 RB denotes not
T8410 1466-1469 CC denotes but
T8409 1464-1465 , denotes ,
T8408 1457-1464 NNS denotes globins
T8407 1455-1456 NN denotes β
T8406 1449-1454 NN denotes adult
T8405 1441-1448 JJ denotes express
T8404 1439-1440 , denotes ,
T8403 1435-1439 NN denotes line
T8402 1430-1434 NN denotes cell
T8401 1414-1429 JJ denotes erythroleukemic
T8400 1407-1413 JJ denotes murine
T8399 1405-1406 DT denotes a
T8398 1403-1404 , denotes ,
T8397 1398-1403 NNS denotes cells
T8396 1394-1397 NNP denotes MEL
T8395 1392-1393 . denotes .
T8394 1387-1392 NN denotes probe
T8393 1381-1386 JJ denotes 36-bp
T8392 1376-1380 JJ denotes same
T8391 1372-1375 DT denotes the
T8390 1362-1371 VBG denotes employing
T8389 1357-1361 NNP denotes EMSA
T8388 1354-1356 IN denotes in
T8387 1349-1353 VBN denotes used
T8386 1344-1348 VBD denotes were
T8385 1338-1343 NNS denotes cells
T8384 1334-1337 NNP denotes MEL
T8383 1329-1333 IN denotes from
T8382 1320-1328 NNS denotes extracts
T8381 1312-1319 JJ denotes nuclear
T8380 1310-1311 , denotes ,
T8379 1306-1310 JJ denotes Next
T8378 1304-1305 . denotes .
T8377 1303-1304 -RRB- denotes )
T8376 1301-1303 NN denotes 3C
T8375 1294-1300 NN denotes Figure
T8374 1293-1294 -LRB- denotes (
T8373 1285-1292 NNS denotes results
T8372 1279-1284 DT denotes these
T8371 1269-1278 VBD denotes confirmed
T8370 1264-1268 WDT denotes that
T8369 1259-1263 NNP denotes EMSA
T8368 1251-1258 DT denotes another
T8367 1248-1250 IN denotes in
T8366 1243-1247 VBN denotes used
T8365 1239-1242 VBD denotes was
T8364 1234-1238 NN denotes Sox6
T8363 1224-1233 JJ denotes HA-tagged
T8362 1221-1223 DT denotes an
T8361 1219-1220 , denotes ,
T8360 1214-1219 NN denotes probe
T8359 1210-1213 DT denotes the
T8358 1207-1209 TO denotes to
T8357 1201-1206 VBZ denotes binds
T8356 1194-1200 PRP denotes itself
T8355 1190-1193 NN denotes tag
T8354 1184-1189 JJ denotes c-Myc
T8353 1180-1183 DT denotes the
T8352 1175-1179 IN denotes that
T8351 1163-1174 NN denotes possibility
T8350 1159-1162 DT denotes the
T8349 1155-1158 RP denotes out
T8348 1150-1154 VB denotes rule
T8347 1147-1149 TO denotes To
T8346 1145-1146 . denotes .
T8345 1132-1145 JJ denotes Sox6-specific
T8344 1129-1131 VBZ denotes is
T8343 1121-1128 JJ denotes binding
T8342 1117-1120 DT denotes the
T8341 1112-1116 IN denotes that
T8340 1101-1111 VBG denotes indicating
T8339 1099-1100 , denotes ,
T8338 1095-1099 NN denotes band
T8337 1091-1094 DT denotes the
T8336 1080-1090 VBP denotes supershift
T8335 1069-1079 NNS denotes antibodies
T8334 1064-1068 JJ denotes Sox6
T8333 1060-1063 CC denotes and
T8332 1054-1059 JJ denotes c-Myc
T8331 1049-1053 DT denotes both
T8330 1047-1048 , denotes ,
T8329 1039-1047 RB denotes Moreover
T8328 1037-1038 . denotes .
T8327 1030-1037 NN denotes protein
T8326 1025-1029 NNP denotes Sox6
T8325 1018-1024 VBN denotes tagged
T8324 1014-1017 DT denotes the
T8323 1011-1013 IN denotes by
T8322 1003-1010 VBN denotes shifted
T8321 999-1002 VBD denotes was
T8320 993-998 NN denotes probe
T8319 987-992 JJ denotes 36-bp
T8318 983-986 DT denotes The
T8317 981-982 . denotes .
T8316 980-981 -RRB- denotes )
T8315 978-980 CD denotes 2C
T8314 971-977 NN denotes Figure
T8313 970-971 -LRB- denotes (
T8312 958-969 NNS denotes experiments
T8311 949-957 NN denotes analysis
T8310 940-948 NN denotes deletion
T8309 936-939 DT denotes the
T8308 933-935 IN denotes by
T8307 925-932 VBN denotes defined
T8306 916-924 NN denotes promoter
T8305 913-915 JJ denotes ɛy
T8304 909-912 DT denotes the
T8303 902-908 IN denotes within
T8302 900-901 -RRB- denotes )
T8301 898-900 NN denotes 3B
T8300 891-897 NN denotes Figure
T8299 890-891 -LRB- denotes (
T8298 883-889 NN denotes region
T8297 877-882 JJ denotes 36-bp
T8296 873-876 DT denotes the
T8295 868-872 IN denotes with
T8294 858-867 JJ denotes associate
T8293 847-857 RB denotes physically
T8292 844-846 TO denotes to
T8291 839-843 JJ denotes able
T8290 836-838 VBZ denotes is
T8289 831-835 NNP denotes Sox6
T8288 829-830 . denotes .
T8287 828-829 -RRB- denotes )
T8286 826-828 NN denotes 3A
T8285 819-825 NN denotes Figure
T8284 818-819 -LRB- denotes (
T8283 812-817 NNS denotes sites
T8282 804-811 JJ denotes binding
T8281 795-803 NNP denotes Sox/Sox6
T8280 792-794 IN denotes in
T8279 790-791 -RRB- denotes )
T8278 788-790 CD denotes M3
T8277 784-787 CC denotes and
T8276 781-783 CD denotes M2
T8275 780-781 -LRB- denotes (
T8274 772-779 VBN denotes mutated
T8273 769-771 CC denotes or
T8272 767-768 , denotes ,
T8271 766-767 -RRB- denotes )
T8270 764-766 CD denotes M1
T8269 763-764 -LRB- denotes (
T8268 753-762 VBN denotes truncated
T8267 746-752 CC denotes either
T8266 744-745 , denotes ,
T8265 741-744 VBP denotes are
T8264 736-740 WDT denotes that
T8263 729-735 NNS denotes probes
T8262 721-728 VBN denotes mutated
T8261 715-720 CD denotes three
T8260 711-714 VBP denotes are
T8259 706-710 NNP denotes EMSA
T8258 702-705 PRP$ denotes our
T8257 699-701 IN denotes in
T8256 690-698 VBN denotes included
T8255 685-689 RB denotes Also
T8254 683-684 . denotes .
T8253 678-683 NNS denotes sites
T8252 670-677 JJ denotes binding
T8251 661-669 NNP denotes Sox/Sox6
T8250 651-660 NN denotes consensus
T8249 647-650 CD denotes two
T8248 638-646 VBZ denotes contains
T8247 632-637 NN denotes probe
T8246 627-631 DT denotes This
T8245 625-626 . denotes .
T8244 617-625 NNS denotes analyses
T8243 608-616 NN denotes deletion
T8242 599-607 NN denotes promoter
T8241 595-598 PRP$ denotes our
T8240 592-594 IN denotes in
T8239 584-591 VBN denotes defined
T8238 575-583 NN denotes promoter
T8237 572-574 JJ denotes ɛy
T8236 568-571 DT denotes the
T8235 565-567 IN denotes of
T8234 558-564 NN denotes region
T8233 549-557 JJ denotes critical
T8232 545-548 DT denotes the
T8231 542-544 TO denotes to
T8230 530-541 NNS denotes corresponds
T8229 524-529 NN denotes probe
T8228 521-523 NN denotes WT
T8227 519-520 -RRB- denotes )
T8226 517-519 NN denotes bp
T8225 516-517 -LRB- denotes (
T8224 511-515 NN denotes pair
T8223 506-510 NN denotes base
T8222 503-505 CD denotes 36
T8485 1812-1817 NN denotes probe
T8484 1805-1811 JJ denotes mutant
T8483 1802-1804 NNP denotes M2
T8482 1798-1801 DT denotes The
T8481 1796-1797 . denotes .
T8480 1795-1796 -RRB- denotes )
T8479 1793-1795 NNP denotes 3E
T8478 1786-1792 NNP denotes Figure
T8477 1785-1786 -LRB- denotes (
T8476 1780-1784 NNP denotes EMSA
T8475 1777-1779 IN denotes in
T8474 1769-1776 VB denotes compete
T8473 1766-1768 TO denotes to
T8472 1758-1765 NN denotes ability
T8471 1752-1757 PRP$ denotes their
T8470 1744-1751 VBP denotes abolish
T8469 1742-1743 -RRB- denotes )
T8468 1740-1742 CD denotes M3
T8467 1736-1739 CC denotes and
T8466 1733-1735 CD denotes M1
T8465 1732-1733 -LRB- denotes (
T8464 1726-1731 NNS denotes sites
T8463 1718-1725 JJ denotes binding
T8462 1709-1717 NNP denotes Sox/Sox6
T8461 1700-1708 JJ denotes putative
T8460 1697-1699 IN denotes of
T8459 1688-1696 NNP denotes Ablation
T8458 1686-1687 . denotes .
T8457 1685-1686 -RRB- denotes )
T8456 1683-1685 CD denotes 3E
T8455 1676-1682 NN denotes Figure
T8454 1675-1676 -LRB- denotes (
T8453 1669-1674 NN denotes assay
T8452 1657-1668 NN denotes competition
T8451 1653-1656 DT denotes the
T8450 1650-1652 IN denotes in
T8449 1644-1649 VBN denotes shown
T8448 1641-1643 IN denotes as
T8447 1639-1640 , denotes ,
T8446 1632-1639 JJ denotes binding
T8445 1628-1631 DT denotes the
T8444 1624-1627 IN denotes for
T8443 1615-1623 VBN denotes required
T8442 1611-1614 VBP denotes are
T8441 1605-1610 NN denotes probe
T8440 1601-1604 NNP denotes DNA
T8439 1597-1600 DT denotes the
T8438 1594-1596 IN denotes of
T8437 1588-1593 NNS denotes sites
T8436 1580-1587 JJ denotes binding
T8435 1571-1579 NNP denotes Sox/Sox6
T8434 1561-1570 NN denotes consensus
T8433 1554-1560 JJ denotes intact
T8432 1550-1553 DT denotes The
T8431 1548-1549 . denotes .
T8430 1547-1548 -RRB- denotes )
T8429 1545-1547 CD denotes 3D
T8428 1538-1544 NN denotes Figure
T8427 1537-1538 -LRB- denotes (
T8426 1531-1536 NNS denotes cells
T8425 1527-1530 NNP denotes MEL
T8424 1524-1526 IN denotes in
T8423 1515-1523 NN denotes sequence
T8422 1511-1514 NN denotes DNA
T8421 1506-1510 DT denotes this
T8420 1503-1505 TO denotes to
T8419 1497-1502 VBZ denotes binds
T8418 1488-1496 RB denotes directly
T8417 1483-1487 JJ denotes Sox6
T8416 1481-1482 . denotes .
T8415 1480-1481 NNP denotes ]
T8414 1478-1480 CD denotes 33
T8413 1477-1478 NNP denotes [
T8412 1474-1476 VB denotes ɛy
R5604 T8230 T8230 ROOT corresponds,corresponds
R5605 T8231 T8230 prep to,corresponds
R5606 T8232 T8234 det the,region
R5607 T8233 T8234 amod critical,region
R5608 T8234 T8231 pobj region,to
R5609 T8140 T8155 nsubj EMSA,repress
R5610 T8141 T8140 cc and,EMSA
R5611 T8142 T8144 compound ChIP,Show
R5612 T8235 T8234 prep of,region
R5613 T8143 T8144 compound Assays,Show
R5614 T8144 T8140 conj Show,EMSA
R5615 T8145 T8148 mark that,Binds
R5616 T8236 T8238 det the,promoter
R5617 T8146 T8148 nsubj Sox6,Binds
R5618 T8147 T8148 advmod Directly,Binds
R5619 T8148 T8155 advcl Binds,repress
R5620 T8149 T8148 prep to,Binds
R5621 T8237 T8238 amod ɛy,promoter
R5622 T8150 T8151 det the,ɛy
R5623 T8151 T8155 nsubj ɛy,repress
R5624 T8152 T8153 compound Promoter,Sox6
R5625 T8153 T8151 appos Sox6,ɛy
R5626 T8238 T8235 pobj promoter,of
R5627 T8154 T8155 aux might,repress
R5628 T8155 T8155 ROOT repress,repress
R5629 T8239 T8238 acl defined,promoter
R5630 T8156 T8158 det the,promoter
R5631 T8157 T8158 amod ɛy,promoter
R5632 T8158 T8155 dobj promoter,repress
R5633 T8240 T8239 prep in,defined
R5634 T8159 T8155 punct ",",repress
R5635 T8160 T8161 preconj either,through
R5636 T8161 T8155 prep through,repress
R5637 T8162 T8164 amod direct,contact
R5638 T8241 T8244 poss our,analyses
R5639 T8163 T8164 amod physical,contact
R5640 T8164 T8161 pobj contact,through
R5641 T8165 T8164 prep with,contact
R5642 T8242 T8243 compound promoter,deletion
R5643 T8166 T8167 det the,promoter
R5644 T8167 T8165 pobj promoter,with
R5645 T8168 T8165 cc or,with
R5646 T8243 T8244 compound deletion,analyses
R5647 T8169 T8155 prep by,repress
R5648 T8170 T8169 pcomp regulating,by
R5649 T8171 T8170 dobj intermediates,regulating
R5650 T8244 T8240 pobj analyses,in
R5651 T8172 T8171 acl affecting,intermediates
R5652 T8173 T8175 det the,promoter
R5653 T8245 T8230 punct .,corresponds
R5654 T8174 T8175 amod ɛy,promoter
R5655 T8175 T8172 dobj promoter,affecting
R5656 T8176 T8155 punct .,repress
R5657 T8177 T8178 aux To,investigate
R5658 T8178 T8191 advcl investigate,performed
R5659 T8179 T8183 mark whether,associated
R5660 T8180 T8183 nsubjpass Sox6,associated
R5661 T8181 T8183 auxpass is,associated
R5662 T8246 T8247 det This,probe
R5663 T8182 T8183 advmod directly,associated
R5664 T8183 T8178 ccomp associated,investigate
R5665 T8184 T8183 prep with,associated
R5666 T8185 T8187 det the,promoter
R5667 T8247 T8248 nsubj probe,contains
R5668 T8186 T8187 amod ɛy,promoter
R5669 T8187 T8184 pobj promoter,with
R5670 T8188 T8191 punct ",",performed
R5671 T8189 T8191 nsubj we,performed
R5672 T8248 T8248 ROOT contains,contains
R5673 T8190 T8191 advmod first,performed
R5674 T8191 T8191 ROOT performed,performed
R5675 T8192 T8194 amod electrophoretic,shift
R5676 T8193 T8194 compound mobility,shift
R5677 T8194 T8195 compound shift,assays
R5678 T8195 T8191 dobj assays,performed
R5679 T8249 T8253 nummod two,sites
R5680 T8196 T8195 punct (,assays
R5681 T8197 T8195 appos EMSA,assays
R5682 T8198 T8195 punct ),assays
R5683 T8199 T8191 advcl using,performed
R5684 T8200 T8202 det a,Sox6
R5685 T8250 T8253 compound consensus,sites
R5686 T8201 T8202 amod c-Myc-tagged,Sox6
R5687 T8251 T8253 nmod Sox/Sox6,sites
R5688 T8202 T8199 dobj Sox6,using
R5689 T8203 T8199 prep in,using
R5690 T8204 T8207 det a,transcription/translation
R5691 T8252 T8253 amod binding,sites
R5692 T8205 T8207 nmod reticulocyte,transcription/translation
R5693 T8206 T8207 amod lysate-based,transcription/translation
R5694 T8207 T8203 pobj transcription/translation,in
R5695 T8253 T8248 dobj sites,contains
R5696 T8208 T8207 prep in,transcription/translation
R5697 T8209 T8210 amod vitro,system
R5698 T8254 T8248 punct .,contains
R5699 T8210 T8208 pobj system,in
R5700 T8211 T8191 punct .,performed
R5701 T8255 T8256 advmod Also,included
R5702 T8212 T8213 det The,probes
R5703 T8213 T8216 nsubjpass probes,listed
R5704 T8214 T8213 acl used,probes
R5705 T8215 T8216 auxpass are,listed
R5706 T8216 T8216 ROOT listed,listed
R5707 T8217 T8216 prep in,listed
R5708 T8256 T8256 ROOT included,included
R5709 T8218 T8219 compound Figure,3A
R5710 T8219 T8217 pobj 3A,in
R5711 T8220 T8216 punct .,listed
R5712 T8257 T8256 prep in,included
R5713 T8221 T8224 det The,pair
R5714 T8222 T8223 nummod 36,base
R5715 T8223 T8224 compound base,pair
R5716 T8258 T8259 poss our,EMSA
R5717 T8224 T8224 ROOT pair,pair
R5718 T8225 T8224 punct (,pair
R5719 T8226 T8224 appos bp,pair
R5720 T8259 T8257 pobj EMSA,in
R5721 T8227 T8224 punct ),pair
R5722 T8228 T8229 compound WT,probe
R5723 T8229 T8230 nsubj probe,corresponds
R5724 T8260 T8256 auxpass are,included
R5725 T8261 T8263 nummod three,probes
R5726 T8262 T8263 amod mutated,probes
R5727 T8263 T8256 nsubjpass probes,included
R5728 T8327 T8323 pobj protein,by
R5729 T8264 T8265 nsubj that,are
R5730 T8328 T8322 punct .,shifted
R5731 T8329 T8336 advmod Moreover,supershift
R5732 T8330 T8336 punct ",",supershift
R5733 T8265 T8263 relcl are,probes
R5734 T8331 T8332 preconj both,c-Myc
R5735 T8332 T8336 nsubj c-Myc,supershift
R5736 T8266 T8265 punct ",",are
R5737 T8333 T8332 cc and,c-Myc
R5738 T8334 T8332 conj Sox6,c-Myc
R5739 T8335 T8332 conj antibodies,c-Myc
R5740 T8267 T8268 preconj either,truncated
R5741 T8336 T8336 ROOT supershift,supershift
R5742 T8337 T8338 det the,band
R5743 T8268 T8265 acomp truncated,are
R5744 T8338 T8336 dobj band,supershift
R5745 T8339 T8336 punct ",",supershift
R5746 T8340 T8336 advcl indicating,supershift
R5747 T8269 T8268 punct (,truncated
R5748 T8341 T8344 mark that,is
R5749 T8342 T8343 det the,binding
R5750 T8343 T8344 nsubj binding,is
R5751 T8270 T8268 npadvmod M1,truncated
R5752 T8344 T8340 ccomp is,indicating
R5753 T8345 T8344 acomp Sox6-specific,is
R5754 T8346 T8336 punct .,supershift
R5755 T8347 T8348 aux To,rule
R5756 T8348 T8366 advcl rule,used
R5757 T8349 T8348 prt out,rule
R5758 T8271 T8268 punct ),truncated
R5759 T8350 T8351 det the,possibility
R5760 T8351 T8348 dobj possibility,rule
R5761 T8352 T8357 mark that,binds
R5762 T8272 T8265 punct ",",are
R5763 T8353 T8355 det the,tag
R5764 T8354 T8355 amod c-Myc,tag
R5765 T8355 T8357 nsubj tag,binds
R5766 T8273 T8265 cc or,are
R5767 T8356 T8355 appos itself,tag
R5768 T8357 T8351 acl binds,possibility
R5769 T8274 T8265 conj mutated,are
R5770 T8275 T8274 punct (,mutated
R5771 T8358 T8357 prep to,binds
R5772 T8276 T8274 dobj M2,mutated
R5773 T8359 T8360 det the,probe
R5774 T8360 T8358 pobj probe,to
R5775 T8361 T8366 punct ",",used
R5776 T8277 T8276 cc and,M2
R5777 T8362 T8364 det an,Sox6
R5778 T8363 T8364 amod HA-tagged,Sox6
R5779 T8364 T8366 nsubjpass Sox6,used
R5780 T8278 T8276 conj M3,M2
R5781 T8365 T8366 auxpass was,used
R5782 T8366 T8366 ROOT used,used
R5783 T8279 T8276 punct ),M2
R5784 T8367 T8366 prep in,used
R5785 T8368 T8369 det another,EMSA
R5786 T8369 T8367 pobj EMSA,in
R5787 T8280 T8274 prep in,mutated
R5788 T8370 T8371 nsubj that,confirmed
R5789 T8371 T8366 ccomp confirmed,used
R5790 T8372 T8373 det these,results
R5791 T8281 T8280 pobj Sox/Sox6,in
R5792 T8373 T8371 dobj results,confirmed
R5793 T8374 T8376 punct (,3C
R5794 T8375 T8376 compound Figure,3C
R5795 T8282 T8283 amod binding,sites
R5796 T8376 T8373 appos 3C,results
R5797 T8377 T8376 punct ),3C
R5798 T8378 T8366 punct .,used
R5799 T8283 T8280 pobj sites,in
R5800 T8379 T8382 advmod Next,extracts
R5801 T8380 T8382 punct ",",extracts
R5802 T8284 T8286 punct (,3A
R5803 T8381 T8382 amod nuclear,extracts
R5804 T8382 T8387 nsubjpass extracts,used
R5805 T8383 T8382 prep from,extracts
R5806 T8384 T8385 compound MEL,cells
R5807 T8385 T8383 pobj cells,from
R5808 T8386 T8387 auxpass were,used
R5809 T8387 T8387 ROOT used,used
R5810 T8285 T8286 compound Figure,3A
R5811 T8388 T8387 prep in,used
R5812 T8389 T8388 pobj EMSA,in
R5813 T8390 T8387 advcl employing,used
R5814 T8286 T8274 npadvmod 3A,mutated
R5815 T8391 T8394 det the,probe
R5816 T8392 T8394 amod same,probe
R5817 T8393 T8394 amod 36-bp,probe
R5818 T8287 T8263 punct ),probes
R5819 T8394 T8390 dobj probe,employing
R5820 T8395 T8387 punct .,used
R5821 T8396 T8397 compound MEL,cells
R5822 T8288 T8256 punct .,included
R5823 T8397 T8397 ROOT cells,cells
R5824 T8398 T8397 punct ",",cells
R5825 T8399 T8403 det a,line
R5826 T8289 T8290 nsubj Sox6,is
R5827 T8400 T8403 amod murine,line
R5828 T8401 T8402 compound erythroleukemic,cell
R5829 T8402 T8403 compound cell,line
R5830 T8290 T8290 ROOT is,is
R5831 T8403 T8397 appos line,cells
R5832 T8404 T8403 punct ",",line
R5833 T8405 T8408 amod express,globins
R5834 T8291 T8290 acomp able,is
R5835 T8406 T8408 compound adult,globins
R5836 T8407 T8408 compound β,globins
R5837 T8408 T8403 conj globins,line
R5838 T8292 T8294 aux to,associate
R5839 T8409 T8408 punct ",",globins
R5840 T8410 T8408 cc but,globins
R5841 T8411 T8412 neg not,ɛy
R5842 T8293 T8294 advmod physically,associate
R5843 T8412 T8408 conj ɛy,globins
R5844 T8413 T8415 nmod [,]
R5845 T8414 T8415 nummod 33,]
R5846 T8294 T8291 xcomp associate,able
R5847 T8415 T8415 ROOT ],]
R5848 T8416 T8415 punct .,]
R5849 T8417 T8419 amod Sox6,binds
R5850 T8295 T8294 prep with,associate
R5851 T8418 T8419 advmod directly,binds
R5852 T8419 T8419 ROOT binds,binds
R5853 T8420 T8419 prep to,binds
R5854 T8296 T8298 det the,region
R5855 T8421 T8423 det this,sequence
R5856 T8422 T8423 compound DNA,sequence
R5857 T8423 T8420 pobj sequence,to
R5858 T8297 T8298 amod 36-bp,region
R5859 T8298 T8295 pobj region,with
R5860 T8424 T8423 prep in,sequence
R5861 T8299 T8301 punct (,3B
R5862 T8300 T8301 compound Figure,3B
R5863 T8425 T8426 compound MEL,cells
R5864 T8301 T8298 appos 3B,region
R5865 T8426 T8424 pobj cells,in
R5866 T8302 T8298 punct ),region
R5867 T8427 T8428 punct (,Figure
R5868 T8428 T8426 appos Figure,cells
R5869 T8303 T8294 prep within,associate
R5870 T8429 T8428 nummod 3D,Figure
R5871 T8430 T8428 punct ),Figure
R5872 T8431 T8419 punct .,binds
R5873 T8304 T8306 det the,promoter
R5874 T8432 T8434 det The,consensus
R5875 T8433 T8434 amod intact,consensus
R5876 T8434 T8434 ROOT consensus,consensus
R5877 T8305 T8306 amod ɛy,promoter
R5878 T8435 T8434 appos Sox/Sox6,consensus
R5879 T8306 T8303 pobj promoter,within
R5880 T8436 T8437 amod binding,sites
R5881 T8307 T8306 acl defined,promoter
R5882 T8437 T8443 nsubjpass sites,required
R5883 T8438 T8437 prep of,sites
R5884 T8308 T8307 agent by,defined
R5885 T8439 T8441 det the,probe
R5886 T8440 T8441 compound DNA,probe
R5887 T8309 T8312 det the,experiments
R5888 T8441 T8438 pobj probe,of
R5889 T8442 T8443 auxpass are,required
R5890 T8443 T8434 relcl required,consensus
R5891 T8310 T8312 compound deletion,experiments
R5892 T8444 T8443 prep for,required
R5893 T8445 T8446 det the,binding
R5894 T8311 T8312 compound analysis,experiments
R5895 T8446 T8444 pobj binding,for
R5896 T8447 T8443 punct ",",required
R5897 T8312 T8308 pobj experiments,by
R5898 T8448 T8449 mark as,shown
R5899 T8449 T8443 advcl shown,required
R5900 T8450 T8449 prep in,shown
R5901 T8313 T8314 punct (,Figure
R5902 T8451 T8453 det the,assay
R5903 T8452 T8453 compound competition,assay
R5904 T8314 T8312 appos Figure,experiments
R5905 T8453 T8450 pobj assay,in
R5906 T8454 T8455 punct (,Figure
R5907 T8455 T8453 appos Figure,assay
R5908 T8456 T8455 nummod 3E,Figure
R5909 T8457 T8455 punct ),Figure
R5910 T8458 T8443 punct .,required
R5911 T8459 T8470 nsubj Ablation,abolish
R5912 T8315 T8314 nummod 2C,Figure
R5913 T8460 T8459 prep of,Ablation
R5914 T8461 T8464 amod putative,sites
R5915 T8462 T8464 nmod Sox/Sox6,sites
R5916 T8316 T8314 punct ),Figure
R5917 T8463 T8464 amod binding,sites
R5918 T8464 T8460 pobj sites,of
R5919 T8317 T8290 punct .,is
R5920 T8465 T8464 punct (,sites
R5921 T8466 T8464 appos M1,sites
R5922 T8467 T8466 cc and,M1
R5923 T8468 T8466 conj M3,M1
R5924 T8318 T8320 det The,probe
R5925 T8469 T8464 punct ),sites
R5926 T8470 T8470 ROOT abolish,abolish
R5927 T8319 T8320 compound 36-bp,probe
R5928 T8471 T8472 poss their,ability
R5929 T8472 T8470 dobj ability,abolish
R5930 T8473 T8474 aux to,compete
R5931 T8320 T8322 nsubjpass probe,shifted
R5932 T8474 T8472 acl compete,ability
R5933 T8475 T8474 prep in,compete
R5934 T8476 T8475 pobj EMSA,in
R5935 T8321 T8322 auxpass was,shifted
R5936 T8477 T8479 punct (,3E
R5937 T8478 T8479 compound Figure,3E
R5938 T8479 T8476 appos 3E,EMSA
R5939 T8322 T8322 ROOT shifted,shifted
R5940 T8480 T8479 punct ),3E
R5941 T8481 T8470 punct .,abolish
R5942 T8482 T8485 det The,probe
R5943 T8323 T8322 agent by,shifted
R5944 T8483 T8485 compound M2,probe
R5945 T8484 T8485 amod mutant,probe
R5946 T8485 T8487 nsubj probe,compete
R5947 T8324 T8327 det the,protein
R5948 T8486 T8487 aux may,compete
R5949 T8487 T8487 ROOT compete,compete
R5950 T8488 T8487 advmod partially,compete
R5951 T8325 T8327 amod tagged,protein
R5952 T8489 T8487 prep with,compete
R5953 T8490 T8489 pobj WT,with
R5954 T8491 T8487 advcl binding,compete
R5955 T8326 T8327 compound Sox6,protein
R5956 T8492 T8487 punct .,compete
R5957 T8493 T8494 aux To,investigate
R5958 T8494 T8516 advcl investigate,co-transfected
R5959 T8495 T8497 det the,significance
R5960 T8496 T8497 amod functional,significance
R5961 T8497 T8494 dobj significance,investigate
R5962 T8521 T8517 pobj vector,with
R5963 T8498 T8497 prep of,significance
R5964 T8499 T8503 det the,sites
R5965 T8500 T8503 amod intact,sites
R5966 T8522 T8521 prep into,vector
R5967 T8501 T8503 nmod Sox/Sox6,sites
R5968 T8502 T8503 amod binding,sites
R5969 T8503 T8498 pobj sites,of
R5970 T8523 T8524 compound GM979,cells
R5971 T8504 T8503 punct ",",sites
R5972 T8505 T8508 det the,reporter
R5973 T8506 T8508 amod ɛy,reporter
R5974 T8524 T8522 pobj cells,into
R5975 T8507 T8508 compound promoter,reporter
R5976 T8508 T8509 nsubj reporter,constructs
R5977 T8509 T8494 dobj constructs,investigate
R5978 T8525 T8516 punct .,co-transfected
R5979 T8510 T8509 prep with,constructs
R5980 T8511 T8512 compound mutagenized,Sox/Sox6
R5981 T8512 T8514 nmod Sox/Sox6,sites
R5982 T8526 T8537 advmod Consistent,constructs
R5983 T8513 T8514 amod binding,sites
R5984 T8514 T8510 pobj sites,with
R5985 T8527 T8526 prep with,Consistent
R5986 T8515 T8516 auxpass were,co-transfected
R5987 T8528 T8530 det the,results
R5988 T8516 T8516 ROOT co-transfected,co-transfected
R5989 T8517 T8516 prep with,co-transfected
R5990 T8529 T8530 compound EMSA,results
R5991 T8518 T8521 det the,vector
R5992 T8519 T8521 amod Sox6,vector
R5993 T8520 T8521 compound overexpression,vector
R5994 T8530 T8527 pobj results,with
R5995 T8531 T8537 punct ",",constructs
R5996 T8532 T8536 det the,reporter
R5997 T8533 T8536 amod mutant,reporter
R5998 T8534 T8536 compound ɛy,reporter
R5999 T8618 T8619 compound liver,cells
R6000 T8535 T8536 compound promoter,reporter
R6001 T8619 T8617 pobj cells,from
R6002 T8620 T8619 prep of,cells
R6003 T8536 T8537 nsubj reporter,constructs
R6004 T8621 T8624 nummod 15.5,mice
R6005 T8622 T8623 compound dpc,WT
R6006 T8537 T8551 nsubj constructs,result
R6007 T8623 T8624 compound WT,mice
R6008 T8624 T8620 pobj mice,of
R6009 T8625 T8612 advcl using,immunoprecipitated
R6010 T8626 T8627 amod Sox6,antibody
R6011 T8627 T8625 dobj antibody,using
R6012 T8628 T8612 punct .,immunoprecipitated
R6013 T8629 T8631 nsubj Figure,shows
R6014 T8538 T8539 punct (,with
R6015 T8630 T8629 nummod 4,Figure
R6016 T8631 T8631 ROOT shows,shows
R6017 T8539 T8537 prep with,constructs
R6018 T8632 T8639 mark that,immunoprecipitated
R6019 T8633 T8636 det the,promoter
R6020 T8540 T8541 det either,one
R6021 T8634 T8636 amod ɛy,promoter
R6022 T8635 T8636 amod proximal,promoter
R6023 T8541 T8539 pobj one,with
R6024 T8636 T8639 nsubjpass promoter,immunoprecipitated
R6025 T8637 T8639 auxpass is,immunoprecipitated
R6026 T8638 T8639 advmod readily,immunoprecipitated
R6027 T8542 T8541 cc or,one
R6028 T8639 T8631 ccomp immunoprecipitated,shows
R6029 T8640 T8639 prep with,immunoprecipitated
R6030 T8641 T8642 amod Sox6,antibody
R6031 T8543 T8546 det both,sites
R6032 T8642 T8640 pobj antibody,with
R6033 T8643 T8639 prep in,immunoprecipitated
R6034 T8644 T8646 det both,cells
R6035 T8544 T8546 amod Sox/Sox6,sites
R6036 T8645 T8646 compound MEL,cells
R6037 T8646 T8643 pobj cells,in
R6038 T8545 T8546 amod binding,sites
R6039 T8647 T8646 cc and,cells
R6040 T8648 T8649 compound liver,cells
R6041 T8649 T8646 conj cells,cells
R6042 T8650 T8631 punct .,shows
R6043 T8546 T8541 conj sites,one
R6044 T8651 T8652 compound Normal,IgG
R6045 T8652 T8654 nsubjpass IgG,used
R6046 T8547 T8541 amod mutagenized,one
R6047 T8653 T8654 auxpass was,used
R6048 T8654 T8654 ROOT used,used
R6049 T8655 T8654 prep as,used
R6050 T8548 T8539 punct ),with
R6051 T8656 T8658 det a,control
R6052 T8657 T8658 amod negative,control
R6053 T8658 T8655 pobj control,as
R6054 T8549 T8551 aux do,result
R6055 T8659 T8661 punct (,4A
R6056 T8660 T8661 compound Figure,4A
R6057 T8661 T8658 appos 4A,control
R6058 T8662 T8661 punct ),4A
R6059 T8663 T8654 punct .,used
R6060 T8664 T8666 det The,data
R6061 T8665 T8666 amod above,data
R6062 T8550 T8551 neg not,result
R6063 T8666 T8674 nsubj data,indicate
R6064 T8667 T8668 punct (,Figures
R6065 T8551 T8551 ROOT result,result
R6066 T8668 T8674 nsubj Figures,indicate
R6067 T8669 T8668 nummod 3,Figures
R6068 T8670 T8669 cc and,3
R6069 T8671 T8668 appos 4,Figures
R6070 T8552 T8551 prep in,result
R6071 T8553 T8555 amod significant,repression
R6072 T8672 T8668 punct ),Figures
R6073 T8673 T8674 advmod clearly,indicate
R6074 T8554 T8555 compound promoter,repression
R6075 T8674 T8674 ROOT indicate,indicate
R6076 T8675 T8687 mark that,binding
R6077 T8676 T8677 amod Sox6,acts
R6078 T8555 T8552 pobj repression,in
R6079 T8677 T8687 nsubj acts,binding
R6080 T8678 T8677 prep as,acts
R6081 T8556 T8555 prep in,repression
R6082 T8679 T8680 det a,repressor
R6083 T8680 T8678 pobj repressor,as
R6084 T8681 T8680 prep of,repressor
R6085 T8557 T8558 compound transfection,studies
R6086 T8682 T8684 det the,gene
R6087 T8683 T8684 compound ɛy,gene
R6088 T8684 T8681 pobj gene,of
R6089 T8558 T8556 pobj studies,in
R6090 T8685 T8677 prep by,acts
R6091 T8686 T8687 advmod directly,binding
R6092 T8687 T8674 ccomp binding,indicate
R6093 T8559 T8560 punct (,Figure
R6094 T8688 T8687 prep to,binding
R6095 T8689 T8691 det the,promoter
R6096 T8560 T8558 appos Figure,studies
R6097 T8690 T8691 amod ɛy,promoter
R6098 T8691 T8688 pobj promoter,to
R6099 T8692 T8674 punct ",",indicate
R6100 T8561 T8560 nummod 3F,Figure
R6101 T8693 T8694 advmod probably,as
R6102 T8694 T8674 prep as,indicate
R6103 T8695 T8696 det a,dimer
R6104 T8562 T8560 punct ),Figure
R6105 T8696 T8694 pobj dimer,as
R6106 T8697 T8674 punct .,indicate
R6107 T8563 T8551 punct .,result
R6108 T8564 T8569 advmod Thus,required
R6109 T8565 T8569 punct ",",required
R6110 T8566 T8567 det both,sites
R6111 T8567 T8569 nsubjpass sites,required
R6112 T8568 T8569 auxpass are,required
R6113 T8569 T8569 ROOT required,required
R6114 T8570 T8569 prep for,required
R6115 T8571 T8572 amod maximal,repression
R6116 T8572 T8570 pobj repression,for
R6119 T8573 T8572 prep of,repression
R6120 T8574 T8573 pobj ɛy,of
R6122 T8575 T8569 agent by,required
R6123 T8576 T8575 pobj Sox6,by
R6124 T8577 T8569 punct ",",required
R6126 T8578 T8569 cc but,required
R6127 T8579 T8580 neg not,to
R6129 T8580 T8569 xcomp to,required
R6131 T8581 T8583 det the,degree
R6133 T8582 T8583 amod same,degree
R6136 T8583 T8580 pobj degree,to
R6139 T8584 T8569 punct .,required
R6141 T8585 T8587 nsubj We,tested
R6142 T8586 T8587 advmod also,tested
R6143 T8587 T8587 ROOT tested,tested
R6145 T8588 T8590 nmod whether,binds
R6146 T8589 T8590 amod Sox6,binds
R6149 T8590 T8587 dobj binds,tested
R6151 T8591 T8590 prep to,binds
R6152 T8592 T8594 det the,promoter
R6153 T8593 T8594 amod ɛy,promoter
R6154 T8594 T8591 pobj promoter,to
R6157 T8595 T8594 prep in,promoter
R6159 T8596 T8595 pobj vivo,in
R6160 T8597 T8590 acl using,binds
R6161 T8598 T8599 compound chromatin,immunoprecipitation
R6162 T8599 T8597 dobj immunoprecipitation,using
R6163 T8600 T8599 punct (,immunoprecipitation
R6164 T8601 T8599 appos ChIP,immunoprecipitation
R6165 T8602 T8599 punct ),immunoprecipitation
R6166 T8603 T8604 punct (,Figure
R6167 T8604 T8590 appos Figure,binds
R6169 T8605 T8604 nummod 4,Figure
R6171 T8606 T8604 punct ),Figure
R6172 T8607 T8587 punct .,tested
R6174 T8608 T8610 det The,complex
R6175 T8609 T8610 amod Sox6-containing,complex
R6176 T8610 T8612 nsubjpass complex,immunoprecipitated
R6179 T8611 T8612 auxpass was,immunoprecipitated
R6180 T8612 T8612 ROOT immunoprecipitated,immunoprecipitated
R6182 T8613 T8612 prep from,immunoprecipitated
R6183 T8614 T8615 compound MEL,cells
R6184 T8615 T8613 pobj cells,from
R6185 T8616 T8613 cc or,from
R6189 T8617 T8613 conj from,from

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7371 1709-1712 Protein denotes Sox
T7370 1615-1623 Positive_regulation denotes required
T7369 1615-1623 Positive_regulation denotes required
T7368 1632-1639 Binding denotes binding
T7367 1632-1639 Binding denotes binding
T7366 1575-1579 Protein denotes Sox6
T7365 1571-1574 Protein denotes Sox
T7364 1497-1502 Binding denotes binds
T7363 1483-1487 Protein denotes Sox6
T7362 1441-1448 Gene_expression denotes express
T7361 1449-1464 Protein denotes adult β globins
T7360 1201-1206 Binding denotes binds
T7359 1234-1238 Protein denotes Sox6
T7358 1186-1189 Protein denotes Myc
T7357 1132-1136 Protein denotes Sox6
T7356 1064-1068 Protein denotes Sox6
T7355 1054-1059 Protein denotes c-Myc
T7354 1025-1029 Protein denotes Sox6
T7353 858-867 Binding denotes associate
T7352 831-835 Protein denotes Sox6
T7351 799-803 Protein denotes Sox6
T7350 795-798 Protein denotes Sox
T7349 665-669 Protein denotes Sox6
T7348 661-664 Protein denotes Sox
T7347 261-271 Binding denotes associated
T7346 379-383 Protein denotes Sox6
T7345 244-248 Protein denotes Sox6
T7344 70-74 Protein denotes Sox6
T7343 45-50 Binding denotes Binds
T7342 61-69 Entity denotes Promoter
T7341 31-35 Protein denotes Sox6
T7396 2942-2949 Binding denotes binding
T7395 2890-2894 Protein denotes Sox6
T7394 2787-2790 Protein denotes IgG
T7393 2731-2735 Protein denotes Sox6
T7392 2636-2649 Protein denotes Sox6 antibody
T7391 2528-2532 Protein denotes Sox6
T7390 2436-2441 Binding denotes binds
T7389 2452-2460 Entity denotes promoter
T7388 2431-2435 Protein denotes Sox6
T7387 2374-2378 Protein denotes Sox6
T7386 2194-2198 Protein denotes Sox6
T7385 2190-2193 Protein denotes Sox
T7384 2126-2164 Protein denotes mutant ɛy promoter reporter constructs
T7383 2043-2047 Protein denotes Sox6
T7382 1995-1999 Protein denotes Sox6
T7381 1991-1994 Protein denotes Sox
T7380 1918-1922 Protein denotes Sox6
T7379 1914-1917 Protein denotes Sox
T7378 1848-1855 Binding denotes binding
T7377 1845-1847 Protein denotes WT
T7376 1744-1751 Negative_regulation denotes abolish
T7375 1744-1751 Negative_regulation denotes abolish
T7374 1769-1776 Binding denotes compete
T7373 1769-1776 Binding denotes compete
T7372 1713-1717 Protein denotes Sox6
R4983 T7341 T7343 themeOf Sox6,Binds
R4984 T7342 T7343 Site Promoter,Binds
R4985 T7345 T7347 themeOf Sox6,associated
R4986 T7352 T7353 themeOf Sox6,associate
R4987 T7358 T7360 themeOf Myc,binds
R4988 T7361 T7362 themeOf adult β globins,express
R4989 T7363 T7364 themeOf Sox6,binds
R4990 T7365 T7367 themeOf Sox,binding
R4991 T7366 T7368 themeOf Sox6,binding
R4992 T7367 T7369 themeOf binding,required
R4993 T7368 T7370 themeOf binding,required
R4994 T7371 T7373 themeOf Sox,compete
R4995 T7372 T7374 themeOf Sox6,compete
R4996 T7373 T7375 themeOf compete,abolish
R4997 T7374 T7376 themeOf compete,abolish
R4998 T7377 T7378 themeOf WT,binding
R4999 T7388 T7390 themeOf Sox6,binds
R5000 T7389 T7390 Site promoter,binds
R5001 T7395 T7396 themeOf Sox6,binding

testone

Id Subject Object Predicate Lexical cue
T7057 2960-2968 Entity denotes promoter
T7056 2957-2959 Entity denotes ɛy
T7055 2942-2949 Binding denotes binding
T7054 2452-2460 Entity denotes promoter
T7053 2436-2441 Binding denotes binds
T7052 1848-1855 Binding denotes binding
T7051 1632-1639 Binding denotes binding
T7050 1615-1623 Positive_regulation denotes required
T7049 1497-1502 Binding denotes binds
T7048 1441-1448 Gene_expression denotes express
T7047 1201-1206 Binding denotes binds
T7046 1121-1128 Binding denotes binding
T7045 880-882 Entity denotes bp
T7044 877-879 Entity denotes 36
T7043 858-867 Binding denotes associate
T7042 261-271 Binding denotes associated
T7041 194-203 Regulation denotes affecting
T7040 81-88 Negative_regulation denotes repress
T7039 61-69 Entity denotes Promoter
T7038 45-50 Binding denotes Binds
T7037 2957-2959 Protein denotes ɛy
T7036 2922-2924 Protein denotes ɛy
T7035 2890-2894 Protein denotes Sox6
T7034 2731-2735 Protein denotes Sox6
T7033 2675-2677 Protein denotes ɛy
T7032 2636-2640 Protein denotes Sox6
T7031 2528-2532 Protein denotes Sox6
T7030 2449-2451 Protein denotes ɛy
T7029 2431-2435 Protein denotes Sox6
T7028 2374-2378 Protein denotes Sox6
T7027 2368-2370 Protein denotes ɛy
T7026 2133-2135 Protein denotes ɛy
T7025 2043-2047 Protein denotes Sox6
T7024 1942-1944 Protein denotes ɛy
T7023 1483-1487 Protein denotes Sox6
T7022 1474-1476 Protein denotes ɛy
T7021 1455-1464 Protein denotes β globins
T7020 1234-1238 Protein denotes Sox6
T7019 1224-1226 Protein denotes HA
T7018 1184-1189 Protein denotes c-Myc
T7017 1132-1136 Protein denotes Sox6
T7016 1064-1068 Protein denotes Sox6
T7015 1054-1059 Protein denotes c-Myc
T7014 1025-1029 Protein denotes Sox6
T7013 913-915 Protein denotes ɛy
T7012 831-835 Protein denotes Sox6
T7011 572-574 Protein denotes ɛy
T7010 379-383 Protein denotes Sox6
T7009 366-371 Protein denotes c-Myc
T7008 281-283 Protein denotes ɛy
T7007 244-248 Protein denotes Sox6
T7006 208-210 Protein denotes ɛy
T7005 93-95 Protein denotes ɛy
T7004 70-74 Protein denotes Sox6
T7003 58-60 Protein denotes ɛy
T7002 31-35 Protein denotes Sox6
R4895 T7002 T7038 themeOf Sox6,Binds
R4896 T7004 T7040 causeOf Sox6,repress
R4897 T7007 T7042 themeOf Sox6,associated
R4898 T7012 T7043 themeOf Sox6,associate
R4899 T7015 T7046 themeOf c-Myc,binding
R4900 T7017 T7046 themeOf Sox6,binding
R4901 T7018 T7047 themeOf c-Myc,binds
R4902 T7019 T7047 themeOf HA,binds
R4903 T7020 T7047 themeOf Sox6,binds
R4904 T7021 T7048 themeOf β globins,express
R4905 T7022 T7048 themeOf ɛy,express
R4906 T7023 T7049 themeOf Sox6,binds
R4907 T7029 T7053 themeOf Sox6,binds
R4908 T7035 T7055 themeOf Sox6,binding
R4909 T7036 T7055 themeOf ɛy,binding
R4910 T7039 T7003 partOf Promoter,ɛy
R4911 T7039 T7038 themeOf Promoter,Binds
R4912 T7051 T7050 themeOf binding,required
R4913 T7054 T7053 themeOf promoter,binds
R4914 T7054 T7030 partOf promoter,ɛy
R4915 T7057 T7056 partOf promoter,ɛy
R4916 T7057 T7055 themeOf promoter,binding

test3

Id Subject Object Predicate Lexical cue
T7138 2957-2959 Protein denotes ɛy
T7137 2942-2949 Binding denotes binding
T7136 2922-2924 Protein denotes ɛy
T7135 2890-2894 Protein denotes Sox6
T7134 2731-2735 Protein denotes Sox6
T7133 2675-2677 Protein denotes ɛy
T7132 2636-2640 Protein denotes Sox6
T7131 2528-2532 Protein denotes Sox6
T7130 2452-2460 Entity denotes promoter
T7129 2449-2451 Protein denotes ɛy
T7128 2436-2441 Binding denotes binds
T7127 2431-2435 Protein denotes Sox6
T7126 2374-2378 Protein denotes Sox6
T7125 2368-2370 Protein denotes ɛy
T7124 2133-2135 Protein denotes ɛy
T7123 2043-2047 Protein denotes Sox6
T7122 1942-1944 Protein denotes ɛy
T7121 1497-1502 Binding denotes binds
T7120 1483-1487 Protein denotes Sox6
T7119 1474-1476 Protein denotes ɛy
T7118 1455-1464 Protein denotes β globins
T7117 1234-1238 Protein denotes Sox6
T7116 1224-1226 Protein denotes HA
T7115 1201-1206 Binding denotes binds
T7114 1184-1189 Protein denotes c-Myc
T7113 1132-1136 Protein denotes Sox6
T7112 1121-1128 Binding denotes binding
T7111 1064-1068 Protein denotes Sox6
T7110 1054-1059 Protein denotes c-Myc
T7109 1025-1029 Protein denotes Sox6
T7108 913-915 Protein denotes ɛy
T7107 831-835 Protein denotes Sox6
T7106 572-574 Protein denotes ɛy
T7105 379-383 Protein denotes Sox6
T7104 366-371 Protein denotes c-Myc
T7103 281-283 Protein denotes ɛy
T7102 244-248 Protein denotes Sox6
T7101 208-210 Protein denotes ɛy
T7100 194-203 Regulation denotes affecting
T7099 93-95 Protein denotes ɛy
T7098 81-88 Negative_regulation denotes repress
T7097 70-74 Protein denotes Sox6
T7096 58-60 Protein denotes ɛy
T7095 45-50 Binding denotes Binds
T7094 31-35 Protein denotes Sox6
T7093 2957-2959 Protein denotes ɛy
T7092 2922-2924 Protein denotes ɛy
T7091 2890-2894 Protein denotes Sox6
T7090 2731-2735 Protein denotes Sox6
T7089 2675-2677 Protein denotes ɛy
T7088 2636-2640 Protein denotes Sox6
T7087 2528-2532 Protein denotes Sox6
T7086 2449-2451 Protein denotes ɛy
T7085 2431-2435 Protein denotes Sox6
T7084 2374-2378 Protein denotes Sox6
T7083 2368-2370 Protein denotes ɛy
T7082 2133-2135 Protein denotes ɛy
T7081 2043-2047 Protein denotes Sox6
T7080 1942-1944 Protein denotes ɛy
T7079 1483-1487 Protein denotes Sox6
T7078 1474-1476 Protein denotes ɛy
T7077 1455-1464 Protein denotes β globins
T7076 1234-1238 Protein denotes Sox6
T7075 1224-1226 Protein denotes HA
T7074 1184-1189 Protein denotes c-Myc
T7073 1132-1136 Protein denotes Sox6
T7072 1064-1068 Protein denotes Sox6
T7071 1054-1059 Protein denotes c-Myc
T7070 1025-1029 Protein denotes Sox6
T7069 913-915 Protein denotes ɛy
T7068 831-835 Protein denotes Sox6
T7067 572-574 Protein denotes ɛy
T7066 379-383 Protein denotes Sox6
T7065 366-371 Protein denotes c-Myc
T7064 281-283 Protein denotes ɛy
T7063 244-248 Protein denotes Sox6
T7062 208-210 Protein denotes ɛy
T7061 93-95 Protein denotes ɛy
T7060 70-74 Protein denotes Sox6
T7059 58-60 Protein denotes ɛy
T7058 31-35 Protein denotes Sox6
R4917 T7094 T7095 themeOf Sox6,Binds
R4918 T7096 T7095 themeOf ɛy,Binds
R4919 T7097 T7098 causeOf Sox6,repress
R4920 T7097 T7100 causeOf Sox6,affecting
R4921 T7099 T7097 themeOf ɛy,Sox6
R4922 T7103 T7102 themeOf ɛy,Sox6
R4923 T7105 T7102 themeOf Sox6,Sox6
R4924 T7110 T7112 themeOf c-Myc,binding
R4925 T7111 T7112 themeOf Sox6,binding
R4926 T7113 T7112 themeOf Sox6,binding
R4927 T7114 T7115 themeOf c-Myc,binds
R4928 T7116 T7115 themeOf HA,binds
R4929 T7117 T7115 themeOf Sox6,binds
R4930 T7120 T7121 themeOf Sox6,binds
R4931 T7127 T7128 themeOf Sox6,binds
R4932 T7130 T7128 themeOf promoter,binds
R4933 T7130 T7129 partOf promoter,ɛy
R4934 T7135 T7137 themeOf Sox6,binding
R4935 T7136 T7135 themeOf ɛy,Sox6
R4936 T7136 T7137 themeOf ɛy,binding
R4937 T7138 T7137 themeOf ɛy,binding