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PMC:1359074 / 13323-14272 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-11504872-85760994 126-127 11504872 denotes 5
16462943-11504872-85760995 431-432 11504872 denotes 5
16462943-11504872-85760996 934-935 11504872 denotes 5
T36890 126-127 11504872 denotes 5
T88558 431-432 11504872 denotes 5
T4443 934-935 11504872 denotes 5

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6147 657-665 NN denotes promoter
T6146 654-656 JJ denotes ɛy
T6145 650-653 DT denotes the
T6144 640-649 VB denotes represses
T6143 635-639 NN denotes Sox6
T6142 630-634 IN denotes that
T6141 619-629 VB denotes indicating
T6140 617-618 -COMMA- denotes ,
T6139 616-617 -RRB- denotes )
T6138 614-616 NN denotes 2B
T6137 607-613 NN denotes Figure
T6136 606-607 -LRB- denotes (
T6135 600-605 NN denotes assay
T6134 587-599 NN denotes transfection
T6133 583-586 DT denotes the
T6132 580-582 IN denotes in
T6131 571-579 NN denotes promoter
T6130 568-570 JJ denotes ɛy
T6129 564-567 DT denotes the
T6128 556-563 VB denotes repress
T6127 553-555 TO denotes to
T6126 545-552 NN denotes ability
T6125 541-544 DT denotes the
T6124 533-540 VB denotes retains
T6123 528-532 NN denotes Sox6
T6122 525-527 IN denotes of
T6121 517-524 NN denotes version
T6120 510-516 JJ denotes mutant
T6119 505-509 DT denotes this
T6118 503-504 -COMMA- denotes ,
T6117 496-503 RB denotes However
T6116 488-494 NN denotes domain
T6115 480-487 NN denotes binding
T6114 476-479 NN denotes DNA
T6113 472-475 NN denotes HMG
T6112 468-471 DT denotes the
T6111 465-467 IN denotes in
T6110 461-464 RB denotes not
T6109 458-460 VB denotes is
T6108 451-457 NN denotes change
T6107 446-450 NN denotes acid
T6106 440-445 JJ denotes amino
T6105 435-439 DT denotes This
T6104 432-433 -RRB- denotes ]
T6103 431-432 CD denotes 5
T6102 430-431 -LRB- denotes [
T6101 418-429 NN denotes interaction
T6100 407-417 JJ denotes Sox6-CtBP2
T6099 399-406 VB denotes abolish
T6098 396-398 TO denotes to
T6097 385-395 JJ denotes sufficient
T6096 382-384 VB denotes be
T6095 379-381 TO denotes to
T6094 370-378 VB denotes reported
T6093 359-369 RB denotes previously
T6092 354-358 VB denotes been
T6091 350-353 VB denotes has
T6090 345-349 WDT denotes that
T6089 337-344 NN denotes protein
T6088 332-336 NN denotes Sox6
T6087 328-331 DT denotes the
T6086 325-327 IN denotes in
T6085 323-324 -RRB- denotes )
T6084 318-323 NN denotes L386H
T6083 317-318 -LRB- denotes (
T6082 308-316 NN denotes mutation
T6081 302-307 NN denotes point
T6080 300-301 DT denotes a
T6079 289-299 VB denotes introduced
T6078 286-288 PRP denotes we
T6077 284-285 -COMMA- denotes ,
T6076 276-284 NN denotes promoter
T6075 273-275 JJ denotes ɛy
T6074 269-272 DT denotes the
T6073 266-268 IN denotes of
T6072 255-265 NN denotes repression
T6071 250-254 NN denotes Sox6
T6070 246-249 IN denotes for
T6069 237-245 VB denotes required
T6068 234-236 VB denotes is
T6067 228-233 NN denotes CtBP2
T6066 223-227 IN denotes with
T6065 211-222 NN denotes interaction
T6064 207-210 DT denotes the
T6063 199-206 IN denotes whether
T6062 187-198 VB denotes investigate
T6061 184-186 TO denotes To
T6060 181-182 -RRB- denotes )
T6059 177-181 NN denotes data
T6058 165-176 JJ denotes unpublished
T6057 164-165 -LRB- denotes (
T6056 158-163 NN denotes cells
T6055 152-157 NN denotes GM979
T6054 149-151 IN denotes in
T6053 139-148 VB denotes expressed
T6052 136-138 VB denotes is
T6051 130-135 NN denotes CtBP2
T6050 127-128 -RRB- denotes ]
T6049 126-127 CD denotes 5
T6048 125-126 -LRB- denotes [
T6047 116-124 NN denotes promoter
T6046 110-115 NN denotes fgf-3
T6045 106-109 DT denotes the
T6044 103-105 IN denotes on
T6043 101-102 -COMMA- denotes ,
T6042 96-101 NN denotes CtBP2
T6041 94-95 -COMMA- denotes ,
T6040 82-94 NN denotes co-repressor
T6039 72-81 VB denotes expressed
T6038 65-71 RB denotes widely
T6037 63-64 DT denotes a
T6036 58-62 IN denotes with
T6035 49-57 VB denotes interact
T6034 46-48 TO denotes to
T6033 42-45 CC denotes and
T6032 32-41 NN denotes repressor
T6031 30-31 DT denotes a
T6030 27-29 IN denotes as
T6029 23-26 VB denotes act
T6028 20-22 TO denotes to
T6027 14-19 VB denotes shown
T6026 9-13 VB denotes been
T6025 5-8 VB denotes has
T6024 0-4 NN denotes Sox6
T6201 947-948 -RRB- denotes )
T6200 945-947 NN denotes 3A
T6199 938-944 NN denotes Figure
T6198 937-938 -LRB- denotes (
T6197 935-936 -RRB- denotes ]
T6196 934-935 CD denotes 5
T6195 933-934 -LRB- denotes [
T6194 927-932 NN denotes sites
T6193 919-926 NN denotes binding
T6192 909-918 NN denotes consensus
T6191 900-908 NN denotes Sox/Sox6
T6190 896-899 CD denotes two
T6189 888-895 VB denotes reveals
T6188 881-887 NN denotes region
T6187 875-880 JJ denotes short
T6186 870-874 DT denotes this
T6185 867-869 IN denotes of
T6184 858-866 NN denotes Analysis
T6183 846-856 NN denotes repression
T6182 841-845 NN denotes Sox6
T6181 837-840 IN denotes for
T6180 828-836 JJ denotes critical
T6179 825-827 VB denotes is
T6178 820-824 WDT denotes that
T6177 811-819 NN denotes promoter
T6176 802-810 JJ denotes proximal
T6175 799-801 JJ denotes ɛy
T6174 795-798 DT denotes the
T6173 788-794 IN denotes within
T6172 786-787 -RRB- denotes )
T6171 783-786 CD denotes −37
T6170 780-782 TO denotes to
T6169 776-779 CD denotes −63
T6168 775-776 -LRB- denotes (
T6167 768-774 NN denotes region
T6166 766-767 DT denotes a
T6165 758-765 VB denotes defined
T6164 756-757 -COMMA- denotes ,
T6163 754-756 NN denotes 2C
T6162 747-753 NN denotes Figure
T6161 744-746 IN denotes in
T6160 738-743 VB denotes shown
T6159 735-737 IN denotes as
T6158 733-734 -COMMA- denotes ,
T6157 725-733 NN denotes promoter
T6156 722-724 JJ denotes ɛy
T6155 718-721 DT denotes the
T6154 715-717 IN denotes of
T6153 706-714 NN denotes analysis
T6152 697-705 NN denotes Deletion
T6151 689-695 NN denotes manner
T6150 671-688 JJ denotes CtBP2-independent
T6149 669-670 DT denotes a
T6148 666-668 IN denotes in
R4172 T6024 T6025 arg1Of Sox6,has
R4173 T6024 T6026 arg1Of Sox6,been
R4174 T6024 T6027 arg2Of Sox6,shown
R4175 T6024 T6029 arg1Of Sox6,act
R4176 T6024 T6035 arg1Of Sox6,interact
R4177 T6027 T6025 arg2Of shown,has
R4178 T6027 T6026 arg2Of shown,been
R4179 T6027 T6048 arg1Of shown,[
R4180 T6029 T6028 arg1Of act,to
R4181 T6029 T6030 arg1Of act,as
R4182 T6029 T6033 arg1Of act,and
R4183 T6032 T6030 arg2Of repressor,as
R4184 T6032 T6031 arg1Of repressor,a
R4185 T6033 T6027 arg3Of and,shown
R4186 T6035 T6033 arg2Of interact,and
R4187 T6035 T6034 arg1Of interact,to
R4188 T6035 T6036 arg1Of interact,with
R4189 T6039 T6038 arg1Of expressed,widely
R4190 T6040 T6036 arg2Of co-repressor,with
R4191 T6040 T6037 arg1Of co-repressor,a
R4192 T6040 T6039 arg1Of co-repressor,expressed
R4193 T6040 T6041 arg1Of co-repressor,","
R4194 T6040 T6043 arg1Of co-repressor,","
R4195 T6040 T6044 arg1Of co-repressor,on
R4196 T6042 T6041 arg2Of CtBP2,","
R4197 T6047 T6044 arg2Of promoter,on
R4198 T6047 T6045 arg1Of promoter,the
R4199 T6047 T6046 arg1Of promoter,fgf-3
R4200 T6049 T6048 arg2Of 5,[
R4201 T6050 T6048 arg3Of ],[
R4202 T6051 T6052 arg1Of CtBP2,is
R4203 T6051 T6053 arg2Of CtBP2,expressed
R4204 T6053 T6052 arg2Of expressed,is
R4205 T6053 T6054 arg1Of expressed,in
R4206 T6056 T6054 arg2Of cells,in
R4207 T6056 T6055 arg1Of cells,GM979
R4208 T6056 T6057 arg1Of cells,(
R4209 T6059 T6057 arg2Of data,(
R4210 T6059 T6058 arg1Of data,unpublished
R4211 T6060 T6057 arg3Of ),(
R4212 T6062 T6061 arg1Of investigate,To
R4213 T6065 T6064 arg1Of interaction,the
R4214 T6065 T6066 arg1Of interaction,with
R4215 T6065 T6068 arg1Of interaction,is
R4216 T6065 T6069 arg2Of interaction,required
R4217 T6067 T6066 arg2Of CtBP2,with
R4218 T6069 T6062 arg2Of required,investigate
R4219 T6069 T6063 arg1Of required,whether
R4220 T6069 T6068 arg2Of required,is
R4221 T6069 T6070 arg1Of required,for
R4222 T6072 T6070 arg2Of repression,for
R4223 T6072 T6071 arg1Of repression,Sox6
R4224 T6072 T6073 arg1Of repression,of
R4225 T6076 T6073 arg2Of promoter,of
R4226 T6076 T6074 arg1Of promoter,the
R4227 T6076 T6075 arg1Of promoter,ɛy
R4228 T6078 T6062 arg1Of we,investigate
R4229 T6078 T6079 arg1Of we,introduced
R4230 T6079 T6061 modOf introduced,To
R4231 T6079 T6077 arg1Of introduced,","
R4232 T6082 T6079 arg2Of mutation,introduced
R4233 T6082 T6080 arg1Of mutation,a
R4234 T6082 T6081 arg1Of mutation,point
R4235 T6082 T6083 arg1Of mutation,(
R4236 T6082 T6086 arg1Of mutation,in
R4237 T6084 T6083 arg2Of L386H,(
R4238 T6085 T6083 arg3Of ),(
R4239 T6089 T6086 arg2Of protein,in
R4240 T6089 T6087 arg1Of protein,the
R4241 T6089 T6088 arg1Of protein,Sox6
R4242 T6089 T6090 arg1Of protein,that
R4243 T6089 T6091 arg1Of protein,has
R4244 T6089 T6092 arg1Of protein,been
R4245 T6089 T6094 arg2Of protein,reported
R4246 T6089 T6096 arg1Of protein,be
R4247 T6089 T6097 arg1Of protein,sufficient
R4248 T6094 T6091 arg2Of reported,has
R4249 T6094 T6092 arg2Of reported,been
R4250 T6094 T6093 arg1Of reported,previously
R4251 T6096 T6094 arg3Of be,reported
R4252 T6096 T6095 arg1Of be,to
R4253 T6097 T6096 arg2Of sufficient,be
R4254 T6099 T6097 arg2Of abolish,sufficient
R4255 T6099 T6098 arg1Of abolish,to
R4256 T6101 T6099 arg2Of interaction,abolish
R4257 T6101 T6100 arg1Of interaction,Sox6-CtBP2
R4258 T6101 T6102 arg1Of interaction,[
R4259 T6103 T6102 arg2Of 5,[
R4260 T6104 T6102 arg3Of ],[
R4261 T6108 T6105 arg1Of change,This
R4262 T6108 T6106 arg1Of change,amino
R4263 T6108 T6107 arg1Of change,acid
R4264 T6108 T6109 arg1Of change,is
R4265 T6108 T6111 arg1Of change,in
R4266 T6109 T6110 arg1Of is,not
R4267 T6111 T6109 arg2Of in,is
R4268 T6116 T6111 arg2Of domain,in
R4269 T6116 T6112 arg1Of domain,the
R4270 T6116 T6113 arg1Of domain,HMG
R4271 T6116 T6114 arg1Of domain,DNA
R4272 T6116 T6115 arg1Of domain,binding
R4273 T6121 T6119 arg1Of version,this
R4274 T6121 T6120 arg1Of version,mutant
R4275 T6121 T6122 arg1Of version,of
R4276 T6121 T6124 arg1Of version,retains
R4277 T6123 T6122 arg2Of Sox6,of
R4278 T6124 T6117 arg1Of retains,However
R4279 T6124 T6118 arg1Of retains,","
R4280 T6124 T6140 arg1Of retains,","
R4281 T6124 T6141 modOf retains,indicating
R4282 T6126 T6124 arg2Of ability,retains
R4283 T6126 T6125 arg1Of ability,the
R4284 T6126 T6127 modOf ability,to
R4285 T6128 T6127 arg1Of repress,to
R4286 T6131 T6128 arg2Of promoter,repress
R4287 T6131 T6129 arg1Of promoter,the
R4288 T6131 T6130 arg1Of promoter,ɛy
R4289 T6131 T6132 arg1Of promoter,in
R4290 T6135 T6132 arg2Of assay,in
R4291 T6135 T6133 arg1Of assay,the
R4292 T6135 T6134 arg1Of assay,transfection
R4293 T6135 T6136 arg1Of assay,(
R4294 T6138 T6136 arg2Of 2B,(
R4295 T6138 T6137 arg1Of 2B,Figure
R4296 T6139 T6136 arg3Of ),(
R4297 T6143 T6144 arg1Of Sox6,represses
R4298 T6144 T6141 arg2Of represses,indicating
R4299 T6144 T6142 arg1Of represses,that
R4300 T6144 T6148 arg1Of represses,in
R4301 T6147 T6144 arg2Of promoter,represses
R4302 T6147 T6145 arg1Of promoter,the
R4303 T6147 T6146 arg1Of promoter,ɛy
R4304 T6151 T6148 arg2Of manner,in
R4305 T6151 T6149 arg1Of manner,a
R4306 T6151 T6150 arg1Of manner,CtBP2-independent
R4307 T6153 T6152 arg1Of analysis,Deletion
R4308 T6153 T6154 arg1Of analysis,of
R4309 T6153 T6165 arg1Of analysis,defined
R4310 T6157 T6154 arg2Of promoter,of
R4311 T6157 T6155 arg1Of promoter,the
R4312 T6157 T6156 arg1Of promoter,ɛy
R4313 T6160 T6159 arg2Of shown,as
R4314 T6160 T6161 arg1Of shown,in
R4315 T6163 T6161 arg2Of 2C,in
R4316 T6163 T6162 arg1Of 2C,Figure
R4317 T6165 T6158 arg1Of defined,","
R4318 T6165 T6159 arg1Of defined,as
R4319 T6165 T6164 arg1Of defined,","
R4320 T6167 T6165 arg2Of region,defined
R4321 T6167 T6166 arg1Of region,a
R4322 T6167 T6168 arg1Of region,(
R4323 T6167 T6173 arg1Of region,within
R4324 T6171 T6168 arg2Of −37,(
R4325 T6171 T6169 arg1Of −37,−63
R4326 T6171 T6170 arg1Of −37,to
R4327 T6172 T6168 arg3Of ),(
R4328 T6177 T6173 arg2Of promoter,within
R4329 T6177 T6174 arg1Of promoter,the
R4330 T6177 T6175 arg1Of promoter,ɛy
R4331 T6177 T6176 arg1Of promoter,proximal
R4332 T6177 T6178 arg1Of promoter,that
R4333 T6177 T6179 arg1Of promoter,is
R4334 T6177 T6180 arg1Of promoter,critical
R4335 T6180 T6179 arg2Of critical,is
R4336 T6180 T6181 arg1Of critical,for
R4337 T6183 T6181 arg2Of repression,for
R4338 T6183 T6182 arg1Of repression,Sox6
R4339 T6184 T6185 arg1Of Analysis,of
R4340 T6184 T6189 arg1Of Analysis,reveals
R4341 T6188 T6185 arg2Of region,of
R4342 T6188 T6186 arg1Of region,this
R4343 T6188 T6187 arg1Of region,short
R4344 T6194 T6189 arg2Of sites,reveals
R4345 T6194 T6190 arg1Of sites,two
R4346 T6194 T6191 arg1Of sites,Sox/Sox6
R4347 T6194 T6192 arg1Of sites,consensus
R4348 T6194 T6193 arg1Of sites,binding
R4349 T6194 T6195 arg1Of sites,[
R4350 T6194 T6198 arg1Of sites,(
R4351 T6196 T6195 arg2Of 5,[
R4352 T6197 T6195 arg3Of ],[
R4353 T6200 T6198 arg2Of 3A,(
R4354 T6200 T6199 arg1Of 3A,Figure
R4355 T6201 T6198 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T5681 273-275 Protein denotes ɛy
T5680 250-254 Protein denotes Sox6
T5679 228-233 Protein denotes CtBP2
T5678 130-135 Protein denotes CtBP2
T5677 110-115 Protein denotes fgf-3
T5676 96-101 Protein denotes CtBP2
T5675 0-4 Protein denotes Sox6
T5692 841-845 Protein denotes Sox6
T5691 799-801 Protein denotes ɛy
T5690 722-724 Protein denotes ɛy
T5689 671-676 Protein denotes CtBP2
T5688 654-656 Protein denotes ɛy
T5687 635-639 Protein denotes Sox6
T5686 568-570 Protein denotes ɛy
T5685 528-532 Protein denotes Sox6
T5684 412-417 Protein denotes CtBP2
T5683 407-411 Protein denotes Sox6
T5682 332-336 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6220 671-676 http://www.uniprot.org/uniprot/P56545 denotes CtBP2
T6219 412-417 http://www.uniprot.org/uniprot/P56545 denotes CtBP2
T6218 228-233 http://www.uniprot.org/uniprot/P56545 denotes CtBP2
T6217 130-135 http://www.uniprot.org/uniprot/P56545 denotes CtBP2
T6216 96-101 http://www.uniprot.org/uniprot/P56545 denotes CtBP2
T6212 635-639 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T6211 528-532 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T6210 407-411 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T6209 332-336 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T6208 250-254 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T6207 0-4 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T6214 904-908 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T6213 841-845 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-MF

Id Subject Object Predicate Lexical cue
T5697 919-926 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T5696 480-487 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T5695 476-494 http://purl.obolibrary.org/obo/GO_0050692 denotes DNA binding domain
T5694 476-487 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding

GO-CC

Id Subject Object Predicate Lexical cue
T5700 158-163 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T5605 858-949 Sentence denotes Analysis of this short region reveals two Sox/Sox6 consensus binding sites [5] (Figure 3A).
T5604 697-857 Sentence denotes Deletion analysis of the ɛy promoter, as shown in Figure 2C, defined a region (−63 to −37) within the ɛy proximal promoter that is critical for Sox6 repression.
T5603 496-696 Sentence denotes However, this mutant version of Sox6 retains the ability to repress the ɛy promoter in the transfection assay (Figure 2B), indicating that Sox6 represses the ɛy promoter in a CtBP2-independent manner.
T5602 435-495 Sentence denotes This amino acid change is not in the HMG DNA binding domain.
T5601 184-434 Sentence denotes To investigate whether the interaction with CtBP2 is required for Sox6 repression of the ɛy promoter, we introduced a point mutation (L386H) in the Sox6 protein that has been previously reported to be sufficient to abolish Sox6-CtBP2 interaction [5].
T5600 130-183 Sentence denotes CtBP2 is expressed in GM979 cells (unpublished data).
T5599 0-129 Sentence denotes Sox6 has been shown to act as a repressor and to interact with a widely expressed co-repressor, CtBP2, on the fgf-3 promoter [5].
T89 0-129 Sentence denotes Sox6 has been shown to act as a repressor and to interact with a widely expressed co-repressor, CtBP2, on the fgf-3 promoter [5].
T90 130-183 Sentence denotes CtBP2 is expressed in GM979 cells (unpublished data).
T91 184-434 Sentence denotes To investigate whether the interaction with CtBP2 is required for Sox6 repression of the ɛy promoter, we introduced a point mutation (L386H) in the Sox6 protein that has been previously reported to be sufficient to abolish Sox6-CtBP2 interaction [5].
T92 435-495 Sentence denotes This amino acid change is not in the HMG DNA binding domain.
T93 496-696 Sentence denotes However, this mutant version of Sox6 retains the ability to repress the ɛy promoter in the transfection assay (Figure 2B), indicating that Sox6 represses the ɛy promoter in a CtBP2-independent manner.
T94 697-857 Sentence denotes Deletion analysis of the ɛy promoter, as shown in Figure 2C, defined a region (−63 to −37) within the ɛy proximal promoter that is critical for Sox6 repression.
T95 858-949 Sentence denotes Analysis of this short region reveals two Sox/Sox6 consensus binding sites [5] (Figure 3A).

simple1

Id Subject Object Predicate Lexical cue
T5815 841-845 Protein denotes Sox6
T5814 799-801 Protein denotes ɛy
T5813 722-724 Protein denotes ɛy
T5812 671-676 Protein denotes CtBP2
T5811 654-656 Protein denotes ɛy
T5810 635-639 Protein denotes Sox6
T5809 568-570 Protein denotes ɛy
T5808 528-532 Protein denotes Sox6
T5807 412-417 Protein denotes CtBP2
T5806 407-411 Protein denotes Sox6
T5805 332-336 Protein denotes Sox6
T5804 273-275 Protein denotes ɛy
T5803 250-254 Protein denotes Sox6
T5802 228-233 Protein denotes CtBP2
T5801 130-135 Protein denotes CtBP2
T5800 110-115 Protein denotes fgf-3
T5799 96-101 Protein denotes CtBP2
T5798 0-4 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6932 846-856 Negative_regulation denotes repression
T6931 640-649 Negative_regulation denotes represses
T6930 556-563 Negative_regulation denotes repress
T6929 211-222 Binding denotes interaction
T6928 255-265 Negative_regulation denotes repression
T6927 418-429 Binding denotes interaction
T6926 399-406 Negative_regulation denotes abolish
T6925 237-245 Positive_regulation denotes required
T6924 139-148 Gene_expression denotes expressed
T6923 72-81 Gene_expression denotes expressed
T6922 49-57 Binding denotes interact
T6914 841-845 Protein denotes Sox6
T6913 799-801 Protein denotes ɛy
T6912 722-724 Protein denotes ɛy
T6911 671-676 Protein denotes CtBP2
T6910 654-656 Protein denotes ɛy
T6909 635-639 Protein denotes Sox6
T6908 568-570 Protein denotes ɛy
T6907 528-532 Protein denotes Sox6
T6906 412-417 Protein denotes CtBP2
T6905 407-411 Protein denotes Sox6
T6904 332-336 Protein denotes Sox6
T6903 273-275 Protein denotes ɛy
T6902 250-254 Protein denotes Sox6
T6901 228-233 Protein denotes CtBP2
T6900 130-135 Protein denotes CtBP2
T6899 110-115 Protein denotes fgf-3
T6898 96-101 Protein denotes CtBP2
T6897 0-4 Protein denotes Sox6
R4872 T6898 T6922 themeOf CtBP2,interact
R4873 T6898 T6923 themeOf CtBP2,expressed
R4874 T6899 T6922 themeOf fgf-3,interact
R4875 T6899 T6923 themeOf fgf-3,expressed
R4876 T6900 T6924 themeOf CtBP2,expressed
R4877 T6901 T6929 themeOf CtBP2,interaction
R4878 T6902 T6928 themeOf Sox6,repression
R4879 T6903 T6928 themeOf ɛy,repression
R4880 T6905 T6927 themeOf Sox6,interaction
R4881 T6906 T6927 themeOf CtBP2,interaction
R4882 T6907 T6930 causeOf Sox6,repress
R4883 T6908 T6930 themeOf ɛy,repress
R4884 T6909 T6931 causeOf Sox6,represses
R4885 T6910 T6931 themeOf ɛy,represses
R4886 T6914 T6932 themeOf Sox6,repression
R4889 T6927 T6926 themeOf interaction,abolish
R4890 T6927 T6926 themeOf interaction,abolish
R4891 T6928 T6925 themeOf repression,required
R4892 T6928 T6925 themeOf repression,required
R4893 T6929 T6925 causeOf interaction,required
R4894 T6929 T6925 causeOf interaction,required

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6270 846-856 Negative_regulation denotes repression
T6269 556-563 Negative_regulation denotes repress
T6268 677-688 Regulation denotes independent
T6267 640-649 Negative_regulation denotes represses
T6266 211-222 Binding denotes interaction
T6265 418-429 Binding denotes interaction
T6264 237-245 Positive_regulation denotes required
T6263 399-406 Negative_regulation denotes abolish
T6262 255-265 Negative_regulation denotes repression
T6261 139-148 Gene_expression denotes expressed
T6260 72-81 Gene_expression denotes expressed
T6259 49-57 Binding denotes interact
T6253 841-845 Protein denotes Sox6
T6252 799-801 Protein denotes ɛy
T6251 722-724 Protein denotes ɛy
T6250 671-676 Protein denotes CtBP2
T6249 654-656 Protein denotes ɛy
T6248 635-639 Protein denotes Sox6
T6247 568-570 Protein denotes ɛy
T6246 528-532 Protein denotes Sox6
T6245 412-417 Protein denotes CtBP2
T6244 407-411 Protein denotes Sox6
T6243 332-336 Protein denotes Sox6
T6242 273-275 Protein denotes ɛy
T6241 250-254 Protein denotes Sox6
T6240 228-233 Protein denotes CtBP2
T6239 130-135 Protein denotes CtBP2
T6238 110-115 Protein denotes fgf-3
T6237 96-101 Protein denotes CtBP2
T6236 0-4 Protein denotes Sox6
R4362 T6236 T6259 themeOf Sox6,interact
R4363 T6236 T6259 themeOf Sox6,interact
R4364 T6237 T6259 themeOf CtBP2,interact
R4365 T6237 T6260 themeOf CtBP2,expressed
R4366 T6238 T6259 themeOf fgf-3,interact
R4367 T6238 T6260 themeOf fgf-3,expressed
R4368 T6239 T6261 themeOf CtBP2,expressed
R4369 T6240 T6266 themeOf CtBP2,interaction
R4370 T6241 T6262 themeOf Sox6,repression
R4371 T6244 T6265 themeOf Sox6,interaction
R4372 T6245 T6265 themeOf CtBP2,interaction
R4373 T6247 T6269 themeOf ɛy,repress
R4374 T6248 T6267 causeOf Sox6,represses
R4375 T6249 T6267 themeOf ɛy,represses
R4376 T6250 T6268 themeOf CtBP2,independent
R4377 T6253 T6270 themeOf Sox6,repression
R4378 T6262 T6264 themeOf repression,required
R4379 T6265 T6263 themeOf interaction,abolish
R4380 T6265 T6263 themeOf interaction,abolish

DLUT931

Id Subject Object Predicate Lexical cue
T6322 846-856 Negative_regulation denotes repression
T6321 677-688 Regulation denotes independent
T6320 640-649 Negative_regulation denotes represses
T6319 556-563 Negative_regulation denotes repress
T6318 399-406 Negative_regulation denotes abolish
T6317 237-245 Positive_regulation denotes required
T6316 418-429 Binding denotes interaction
T6315 308-316 Regulation denotes mutation
T6314 255-265 Negative_regulation denotes repression
T6313 211-222 Binding denotes interaction
T6312 139-148 Gene_expression denotes expressed
T6311 72-81 Gene_expression denotes expressed
T6310 49-57 Binding denotes interact
T6303 841-845 Protein denotes Sox6
T6302 799-801 Protein denotes ɛy
T6301 722-724 Protein denotes ɛy
T6300 671-676 Protein denotes CtBP2
T6299 654-656 Protein denotes ɛy
T6298 635-639 Protein denotes Sox6
T6297 568-570 Protein denotes ɛy
T6296 528-532 Protein denotes Sox6
T6295 412-417 Protein denotes CtBP2
T6294 407-411 Protein denotes Sox6
T6293 332-336 Protein denotes Sox6
T6292 273-275 Protein denotes ɛy
T6291 250-254 Protein denotes Sox6
T6290 228-233 Protein denotes CtBP2
T6289 130-135 Protein denotes CtBP2
T6288 110-115 Protein denotes fgf-3
T6287 96-101 Protein denotes CtBP2
T6286 0-4 Protein denotes Sox6
R4391 T6286 T6310 themeOf Sox6,interact
R4392 T6286 T6310 themeOf Sox6,interact
R4393 T6287 T6310 themeOf CtBP2,interact
R4394 T6287 T6310 themeOf CtBP2,interact
R4395 T6288 T6311 themeOf fgf-3,expressed
R4396 T6288 T6310 themeOf fgf-3,interact
R4397 T6288 T6310 themeOf fgf-3,interact
R4398 T6289 T6312 themeOf CtBP2,expressed
R4399 T6290 T6313 themeOf CtBP2,interaction
R4400 T6291 T6314 themeOf Sox6,repression
R4401 T6292 T6314 themeOf ɛy,repression
R4402 T6293 T6315 themeOf Sox6,mutation
R4403 T6294 T6316 themeOf Sox6,interaction
R4404 T6295 T6316 themeOf CtBP2,interaction
R4405 T6297 T6319 themeOf ɛy,repress
R4406 T6298 T6320 causeOf Sox6,represses
R4407 T6299 T6320 themeOf ɛy,represses
R4408 T6300 T6321 causeOf CtBP2,independent
R4409 T6303 T6322 themeOf Sox6,repression
R4410 T6313 T6317 causeOf interaction,required
R4411 T6313 T6317 causeOf interaction,required
R4412 T6314 T6317 themeOf repression,required
R4413 T6314 T6317 themeOf repression,required
R4414 T6316 T6318 themeOf interaction,abolish
R4415 T6320 T6321 themeOf represses,independent

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T6881 407-433 Binding denotes Sox6-CtBP2 interaction [5]
T6880 207-233 Binding denotes the interaction with CtBP2
T6877 130-182 Gene_expression denotes CtBP2 is expressed in GM979 cells (unpublished data)
T6876 722-724 Protein denotes ɛy
T6875 715-733 Entity denotes of the ɛy promoter
T6873 266-284 Entity denotes of the ɛy promoter
T6871 841-845 Protein denotes Sox6
T6870 635-639 Protein denotes Sox6
T6864 273-275 Protein denotes ɛy
T6863 0-4 Protein denotes Sox6
T6862 332-336 Protein denotes Sox6
T6860 671-688 Protein denotes CtBP2-independent
T6855 528-532 Protein denotes Sox6
T6853 328-384 Protein denotes the Sox6 protein that has been previously reported to be
T6850 106-128 Entity denotes the fgf-3 promoter [5]
T6848 435-450 Entity denotes This amino acid
T6846 650-665 Entity denotes the ɛy promoter
T6842 407-433 Protein denotes Sox6-CtBP2 interaction [5]
T6841 468-494 Entity denotes the HMG DNA binding domain
T6840 96-101 Protein denotes CtBP2
T6838 795-819 Entity denotes the ɛy proximal promoter
T6837 583-617 Entity denotes the transfection assay (Figure 2B)
T6836 564-618 Entity denotes the ɛy promoter in the transfection assay (Figure 2B),
T6835 412-417 Protein denotes CtBP2
T6833 654-656 Protein denotes ɛy
T6832 568-570 Protein denotes ɛy
T6831 152-182 Entity denotes GM979 cells (unpublished data)
T6829 106-128 Protein denotes the fgf-3 promoter [5]
T6826 927-936 Entity denotes sites [5]
T6825 250-254 Protein denotes Sox6
T6822 130-135 Protein denotes CtBP2
T6821 799-801 Protein denotes ɛy
T6819 896-918 Protein denotes two Sox/Sox6 consensus
T6813 223-233 Protein denotes with CtBP2
R4850 T6813 T6880 themeOf with CtBP2,the interaction with CtBP2
R4851 T6822 T6877 themeOf CtBP2,CtBP2 is expressed in GM979 cells (unpublished data)
R4852 T6835 T6881 themeOf CtBP2,Sox6-CtBP2 interaction [5]
R4853 T6836 T6832 partOf "the ɛy promoter in the transfection assay (Figure 2B),",ɛy
R4854 T6838 T6821 partOf the ɛy proximal promoter,ɛy
R4857 T6846 T6833 partOf the ɛy promoter,ɛy
R4858 T6850 T6829 partOf the fgf-3 promoter [5],the fgf-3 promoter [5]
R4861 T6873 T6864 partOf of the ɛy promoter,ɛy
R4863 T6875 T6876 partOf of the ɛy promoter,ɛy

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6763 948-949 . denotes .
T6762 947-948 -RRB- denotes )
T6761 945-947 NNP denotes 3A
T6760 938-944 NNP denotes Figure
T6759 937-938 -LRB- denotes (
T6758 935-936 NNP denotes ]
T6757 934-935 CD denotes 5
T6756 933-934 VBP denotes [
T6755 927-932 NNS denotes sites
T6754 919-926 JJ denotes binding
T6753 909-918 NN denotes consensus
T6752 900-908 JJ denotes Sox/Sox6
T6751 896-899 CD denotes two
T6750 888-895 VBZ denotes reveals
T6749 881-887 NN denotes region
T6748 875-880 JJ denotes short
T6747 870-874 DT denotes this
T6746 867-869 IN denotes of
T6745 858-866 NN denotes Analysis
T6744 856-857 . denotes .
T6743 846-856 NN denotes repression
T6742 841-845 JJ denotes Sox6
T6741 837-840 IN denotes for
T6740 828-836 JJ denotes critical
T6739 825-827 VBZ denotes is
T6738 820-824 WDT denotes that
T6737 811-819 NN denotes promoter
T6736 802-810 JJ denotes proximal
T6735 799-801 JJ denotes ɛy
T6734 795-798 DT denotes the
T6733 788-794 IN denotes within
T6732 786-787 -RRB- denotes )
T6731 784-786 CD denotes 37
T6730 783-784 CD denotes −
T6729 780-782 TO denotes to
T6728 777-779 CD denotes 63
T6727 776-777 FW denotes −
T6726 775-776 -LRB- denotes (
T6725 768-774 NN denotes region
T6724 766-767 DT denotes a
T6723 758-765 VBD denotes defined
T6722 756-757 , denotes ,
T6721 754-756 CD denotes 2C
T6720 747-753 NN denotes Figure
T6719 744-746 IN denotes in
T6718 738-743 VBN denotes shown
T6717 735-737 IN denotes as
T6716 733-734 , denotes ,
T6715 725-733 NN denotes promoter
T6714 722-724 JJ denotes ɛy
T6713 718-721 DT denotes the
T6712 715-717 IN denotes of
T6711 706-714 NN denotes analysis
T6710 697-705 NN denotes Deletion
T6709 695-696 . denotes .
T6708 689-695 NN denotes manner
T6707 671-688 JJ denotes CtBP2-independent
T6706 669-670 DT denotes a
T6705 666-668 IN denotes in
T6704 657-665 NN denotes promoter
T6703 654-656 JJ denotes ɛy
T6702 650-653 DT denotes the
T6701 640-649 NNS denotes represses
T6700 635-639 JJ denotes Sox6
T6699 630-634 IN denotes that
T6698 619-629 VBG denotes indicating
T6697 617-618 , denotes ,
T6696 616-617 -RRB- denotes )
T6695 614-616 NN denotes 2B
T6694 607-613 NN denotes Figure
T6693 606-607 -LRB- denotes (
T6692 600-605 NN denotes assay
T6691 587-599 NN denotes transfection
T6690 583-586 DT denotes the
T6689 580-582 IN denotes in
T6688 571-579 NN denotes promoter
T6687 568-570 JJ denotes ɛy
T6686 564-567 DT denotes the
T6685 556-563 VB denotes repress
T6684 553-555 TO denotes to
T6683 545-552 NN denotes ability
T6682 541-544 DT denotes the
T6681 533-540 VBZ denotes retains
T6680 528-532 JJ denotes Sox6
T6679 525-527 IN denotes of
T6678 517-524 NN denotes version
T6677 510-516 JJ denotes mutant
T6676 505-509 DT denotes this
T6675 503-504 , denotes ,
T6674 496-503 RB denotes However
T6673 494-495 . denotes .
T6672 488-494 NN denotes domain
T6671 480-487 JJ denotes binding
T6670 476-479 NNP denotes DNA
T6669 472-475 NNP denotes HMG
T6668 468-471 DT denotes the
T6667 465-467 IN denotes in
T6666 461-464 RB denotes not
T6665 458-460 VBZ denotes is
T6664 451-457 NN denotes change
T6663 446-450 NN denotes acid
T6662 440-445 JJ denotes amino
T6661 435-439 DT denotes This
T6660 433-434 . denotes .
T6659 432-433 NNP denotes ]
T6658 431-432 CD denotes 5
T6657 430-431 NN denotes [
T6656 418-429 NN denotes interaction
T6655 407-417 JJ denotes Sox6-CtBP2
T6654 399-406 VB denotes abolish
T6653 396-398 TO denotes to
T6652 385-395 JJ denotes sufficient
T6651 382-384 VB denotes be
T6650 379-381 TO denotes to
T6649 370-378 VBN denotes reported
T6648 359-369 RB denotes previously
T6647 354-358 VBN denotes been
T6646 350-353 VBZ denotes has
T6645 345-349 WDT denotes that
T6644 337-344 NN denotes protein
T6643 332-336 JJ denotes Sox6
T6642 328-331 DT denotes the
T6641 325-327 IN denotes in
T6640 323-324 -RRB- denotes )
T6639 318-323 NNP denotes L386H
T6638 317-318 -LRB- denotes (
T6637 308-316 NN denotes mutation
T6636 302-307 NN denotes point
T6635 300-301 DT denotes a
T6634 289-299 VBD denotes introduced
T6633 286-288 PRP denotes we
T6632 284-285 , denotes ,
T6631 276-284 NN denotes promoter
T6630 273-275 JJ denotes ɛy
T6629 269-272 DT denotes the
T6628 266-268 IN denotes of
T6627 255-265 NN denotes repression
T6626 250-254 JJ denotes Sox6
T6625 246-249 IN denotes for
T6624 237-245 VBN denotes required
T6623 234-236 VBZ denotes is
T6622 228-233 NNP denotes CtBP2
T6621 223-227 IN denotes with
T6620 211-222 NN denotes interaction
T6619 207-210 DT denotes the
T6618 199-206 IN denotes whether
T6617 187-198 VB denotes investigate
T6616 184-186 TO denotes To
T6615 182-183 . denotes .
T6614 181-182 -RRB- denotes )
T6613 177-181 NNS denotes data
T6612 165-176 JJ denotes unpublished
T6611 164-165 -LRB- denotes (
T6610 158-163 NNS denotes cells
T6609 152-157 NNP denotes GM979
T6608 149-151 IN denotes in
T6607 139-148 VBN denotes expressed
T6606 136-138 VBZ denotes is
T6605 130-135 NNP denotes CtBP2
T6604 128-129 . denotes .
T6603 127-128 NNP denotes ]
T6602 126-127 CD denotes 5
T6601 125-126 NN denotes [
T6600 116-124 NN denotes promoter
T6599 110-115 JJ denotes fgf-3
T6598 106-109 DT denotes the
T6597 103-105 IN denotes on
T6596 101-102 , denotes ,
T6595 96-101 NNP denotes CtBP2
T6594 94-95 , denotes ,
T6593 82-94 NN denotes co-repressor
T6592 72-81 VBN denotes expressed
T6591 65-71 RB denotes widely
T6590 63-64 DT denotes a
T6589 58-62 IN denotes with
T6588 49-57 VB denotes interact
T6587 46-48 TO denotes to
T6586 42-45 CC denotes and
T6585 32-41 NN denotes repressor
T6584 30-31 DT denotes a
T6583 27-29 IN denotes as
T6582 23-26 VB denotes act
T6581 20-22 TO denotes to
T6580 14-19 VBN denotes shown
T6579 9-13 VBN denotes been
T6578 5-8 VBZ denotes has
T6577 0-4 NNP denotes Sox6
R4640 T6577 T6580 nsubjpass Sox6,shown
R4641 T6578 T6580 aux has,shown
R4642 T6579 T6580 auxpass been,shown
R4643 T6580 T6580 ROOT shown,shown
R4644 T6581 T6582 aux to,act
R4645 T6582 T6580 xcomp act,shown
R4646 T6583 T6582 prep as,act
R4647 T6584 T6585 det a,repressor
R4648 T6585 T6583 pobj repressor,as
R4649 T6586 T6582 cc and,act
R4650 T6587 T6588 aux to,interact
R4651 T6588 T6582 conj interact,act
R4652 T6589 T6588 prep with,interact
R4653 T6590 T6593 det a,co-repressor
R4654 T6591 T6592 advmod widely,expressed
R4655 T6592 T6593 amod expressed,co-repressor
R4656 T6593 T6589 pobj co-repressor,with
R4657 T6594 T6593 punct ",",co-repressor
R4658 T6595 T6593 appos CtBP2,co-repressor
R4659 T6596 T6588 punct ",",interact
R4660 T6597 T6588 prep on,interact
R4661 T6598 T6600 det the,promoter
R4662 T6599 T6600 amod fgf-3,promoter
R4663 T6600 T6597 pobj promoter,on
R4664 T6601 T6603 nmod [,]
R4665 T6602 T6601 nummod 5,[
R4666 T6603 T6600 appos ],promoter
R4667 T6604 T6580 punct .,shown
R4668 T6605 T6607 nsubjpass CtBP2,expressed
R4669 T6606 T6607 auxpass is,expressed
R4670 T6607 T6607 ROOT expressed,expressed
R4671 T6608 T6607 prep in,expressed
R4672 T6609 T6610 compound GM979,cells
R4673 T6610 T6608 pobj cells,in
R4674 T6611 T6613 punct (,data
R4675 T6612 T6613 amod unpublished,data
R4676 T6613 T6610 appos data,cells
R4677 T6614 T6607 punct ),expressed
R4678 T6615 T6607 punct .,expressed
R4679 T6616 T6617 aux To,investigate
R4680 T6617 T6634 advcl investigate,introduced
R4681 T6618 T6624 mark whether,required
R4682 T6619 T6620 det the,interaction
R4683 T6620 T6624 nsubjpass interaction,required
R4684 T6621 T6620 prep with,interaction
R4685 T6622 T6621 pobj CtBP2,with
R4686 T6623 T6624 auxpass is,required
R4687 T6624 T6617 ccomp required,investigate
R4688 T6625 T6624 prep for,required
R4689 T6626 T6627 amod Sox6,repression
R4690 T6627 T6625 pobj repression,for
R4691 T6628 T6627 prep of,repression
R4692 T6629 T6631 det the,promoter
R4693 T6630 T6631 amod ɛy,promoter
R4694 T6631 T6628 pobj promoter,of
R4695 T6632 T6634 punct ",",introduced
R4696 T6633 T6634 nsubj we,introduced
R4697 T6634 T6634 ROOT introduced,introduced
R4698 T6635 T6637 det a,mutation
R4699 T6636 T6637 compound point,mutation
R4700 T6637 T6634 dobj mutation,introduced
R4701 T6638 T6637 punct (,mutation
R4702 T6639 T6637 appos L386H,mutation
R4703 T6640 T6637 punct ),mutation
R4704 T6641 T6634 prep in,introduced
R4705 T6642 T6644 det the,protein
R4706 T6643 T6644 amod Sox6,protein
R4707 T6644 T6641 pobj protein,in
R4708 T6645 T6649 nsubjpass that,reported
R4709 T6646 T6649 aux has,reported
R4710 T6647 T6649 auxpass been,reported
R4711 T6648 T6649 advmod previously,reported
R4712 T6649 T6644 relcl reported,protein
R4713 T6650 T6651 aux to,be
R4714 T6651 T6649 xcomp be,reported
R4715 T6652 T6651 acomp sufficient,be
R4716 T6653 T6654 aux to,abolish
R4717 T6654 T6652 xcomp abolish,sufficient
R4718 T6655 T6656 amod Sox6-CtBP2,interaction
R4719 T6656 T6654 dobj interaction,abolish
R4720 T6657 T6659 nmod [,]
R4721 T6658 T6657 nummod 5,[
R4722 T6659 T6644 appos ],protein
R4723 T6660 T6634 punct .,introduced
R4724 T6661 T6664 det This,change
R4725 T6662 T6664 amod amino,change
R4726 T6663 T6664 compound acid,change
R4727 T6664 T6665 nsubj change,is
R4728 T6665 T6665 ROOT is,is
R4729 T6666 T6665 neg not,is
R4730 T6667 T6665 prep in,is
R4731 T6668 T6672 det the,domain
R4732 T6669 T6670 compound HMG,DNA
R4733 T6670 T6672 compound DNA,domain
R4734 T6671 T6672 amod binding,domain
R4735 T6672 T6667 pobj domain,in
R4736 T6673 T6665 punct .,is
R4737 T6674 T6681 advmod However,retains
R4738 T6675 T6681 punct ",",retains
R4739 T6676 T6678 det this,version
R4740 T6677 T6678 amod mutant,version
R4741 T6678 T6681 nsubj version,retains
R4742 T6679 T6678 prep of,version
R4743 T6680 T6679 pobj Sox6,of
R4744 T6681 T6681 ROOT retains,retains
R4745 T6682 T6683 det the,ability
R4746 T6683 T6681 dobj ability,retains
R4747 T6684 T6685 aux to,repress
R4748 T6685 T6683 acl repress,ability
R4749 T6686 T6688 det the,promoter
R4750 T6687 T6688 amod ɛy,promoter
R4751 T6688 T6685 dobj promoter,repress
R4752 T6689 T6688 prep in,promoter
R4753 T6690 T6692 det the,assay
R4754 T6691 T6692 compound transfection,assay
R4755 T6692 T6689 pobj assay,in
R4756 T6693 T6695 punct (,2B
R4757 T6694 T6695 compound Figure,2B
R4758 T6695 T6692 appos 2B,assay
R4759 T6696 T6692 punct ),assay
R4760 T6697 T6681 punct ",",retains
R4761 T6698 T6681 advcl indicating,retains
R4762 T6699 T6701 mark that,represses
R4763 T6700 T6701 nsubj Sox6,represses
R4764 T6701 T6698 ccomp represses,indicating
R4765 T6702 T6704 det the,promoter
R4766 T6703 T6704 amod ɛy,promoter
R4767 T6704 T6701 dobj promoter,represses
R4768 T6705 T6704 prep in,promoter
R4769 T6706 T6708 det a,manner
R4770 T6707 T6708 amod CtBP2-independent,manner
R4771 T6708 T6705 pobj manner,in
R4772 T6709 T6681 punct .,retains
R4773 T6710 T6711 compound Deletion,analysis
R4774 T6711 T6723 nsubj analysis,defined
R4775 T6712 T6711 prep of,analysis
R4776 T6713 T6715 det the,promoter
R4777 T6714 T6715 amod ɛy,promoter
R4778 T6715 T6712 pobj promoter,of
R4779 T6716 T6711 punct ",",analysis
R4780 T6717 T6718 mark as,shown
R4781 T6718 T6711 advcl shown,analysis
R4782 T6719 T6718 prep in,shown
R4783 T6720 T6719 pobj Figure,in
R4784 T6721 T6720 nummod 2C,Figure
R4785 T6722 T6723 punct ",",defined
R4786 T6723 T6723 ROOT defined,defined
R4787 T6724 T6725 det a,region
R4788 T6725 T6723 dobj region,defined
R4789 T6726 T6727 punct (,−
R4790 T6727 T6728 amod −,63
R4791 T6728 T6723 npadvmod 63,defined
R4792 T6729 T6728 prep to,63
R4793 T6730 T6729 pobj −,to
R4794 T6731 T6730 appos 37,−
R4795 T6732 T6730 punct ),−
R4796 T6733 T6729 prep within,to
R4797 T6734 T6737 det the,promoter
R4798 T6735 T6737 amod ɛy,promoter
R4799 T6736 T6737 amod proximal,promoter
R4800 T6737 T6733 pobj promoter,within
R4801 T6738 T6739 nsubj that,is
R4802 T6739 T6737 relcl is,promoter
R4803 T6740 T6739 acomp critical,is
R4804 T6741 T6740 prep for,critical
R4805 T6742 T6743 amod Sox6,repression
R4806 T6743 T6741 pobj repression,for
R4807 T6744 T6723 punct .,defined
R4808 T6745 T6750 nsubj Analysis,reveals
R4809 T6746 T6745 prep of,Analysis
R4810 T6747 T6749 det this,region
R4811 T6748 T6749 amod short,region
R4812 T6749 T6746 pobj region,of
R4813 T6750 T6750 ROOT reveals,reveals
R4814 T6751 T6755 nummod two,sites
R4815 T6752 T6755 amod Sox/Sox6,sites
R4816 T6753 T6755 nmod consensus,sites
R4817 T6754 T6755 amod binding,sites
R4818 T6755 T6750 dobj sites,reveals
R4819 T6756 T6758 nmod [,]
R4820 T6757 T6758 nummod 5,]
R4821 T6758 T6761 compound ],3A
R4822 T6759 T6760 punct (,Figure
R4823 T6760 T6761 compound Figure,3A
R4824 T6761 T6750 oprd 3A,reveals
R4825 T6762 T6750 punct ),reveals
R4826 T6763 T6750 punct .,reveals

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T5742 528-532 Protein denotes Sox6
T5741 472-475 Protein denotes HMG
T5740 399-406 Negative_regulation denotes abolish
T5739 237-245 Positive_regulation denotes required
T5738 418-429 Binding denotes interaction
T5737 255-265 Gene_expression denotes repression
T5736 211-222 Binding denotes interaction
T5735 412-417 Protein denotes CtBP2
T5734 407-411 Protein denotes Sox6
T5733 332-344 Protein denotes Sox6 protein
T5732 250-254 Protein denotes Sox6
T5731 228-233 Protein denotes CtBP2
T5730 139-148 Gene_expression denotes expressed
T5729 130-135 Protein denotes CtBP2
T5728 72-81 Gene_expression denotes expressed
T5727 49-57 Binding denotes interact
T5726 49-57 Binding denotes interact
T5725 110-128 Protein denotes fgf-3 promoter [5]
T5724 96-101 Protein denotes CtBP2
T5723 0-4 Protein denotes Sox6
T5749 904-908 Protein denotes Sox6
T5748 900-903 Protein denotes Sox
T5747 846-856 Gene_expression denotes repression
T5746 841-845 Protein denotes Sox6
T5745 657-665 Entity denotes promoter
T5744 671-676 Protein denotes CtBP2
T5743 635-639 Protein denotes Sox6
R3947 T5723 T5726 themeOf Sox6,interact
R3948 T5723 T5727 themeOf Sox6,interact
R3949 T5724 T5726 themeOf CtBP2,interact
R3950 T5724 T5728 themeOf CtBP2,expressed
R3951 T5725 T5727 themeOf fgf-3 promoter [5],interact
R3952 T5729 T5730 themeOf CtBP2,expressed
R3953 T5731 T5736 themeOf CtBP2,interaction
R3954 T5732 T5737 themeOf Sox6,repression
R3955 T5734 T5738 themeOf Sox6,interaction
R3956 T5735 T5738 themeOf CtBP2,interaction
R3957 T5736 T5739 causeOf interaction,required
R3958 T5737 T5739 themeOf repression,required
R3959 T5738 T5740 themeOf interaction,abolish
R3960 T5746 T5747 themeOf Sox6,repression

testone

Id Subject Object Predicate Lexical cue
T5517 697-705 Negative_regulation denotes Deletion
T5516 640-649 Negative_regulation denotes represses
T5515 418-429 Binding denotes interaction
T5514 399-406 Negative_regulation denotes abolish
T5513 255-265 Negative_regulation denotes repression
T5512 211-222 Binding denotes interaction
T5511 139-148 Gene_expression denotes expressed
T5510 49-57 Binding denotes interact
T5505 841-845 Protein denotes Sox6
T5504 799-801 Protein denotes ɛy
T5503 722-724 Protein denotes ɛy
T5502 671-676 Protein denotes CtBP2
T5501 654-656 Protein denotes ɛy
T5500 635-639 Protein denotes Sox6
T5499 568-570 Protein denotes ɛy
T5498 528-532 Protein denotes Sox6
T5497 412-417 Protein denotes CtBP2
T5496 407-411 Protein denotes Sox6
T5495 332-336 Protein denotes Sox6
T5494 273-275 Protein denotes ɛy
T5493 250-254 Protein denotes Sox6
T5492 228-233 Protein denotes CtBP2
T5491 130-135 Protein denotes CtBP2
T5490 110-115 Protein denotes fgf-3
T5489 96-101 Protein denotes CtBP2
T5488 0-4 Protein denotes Sox6
R3887 T5488 T5510 themeOf Sox6,interact
R3888 T5489 T5510 themeOf CtBP2,interact
R3889 T5491 T5511 themeOf CtBP2,expressed
R3890 T5492 T5512 themeOf CtBP2,interaction
R3891 T5496 T5515 themeOf Sox6,interaction
R3892 T5497 T5515 themeOf CtBP2,interaction
R3893 T5500 T5516 causeOf Sox6,represses
R3896 T5515 T5514 themeOf interaction,abolish

test3

Id Subject Object Predicate Lexical cue
T5591 841-845 Protein denotes Sox6
T5590 799-801 Protein denotes ɛy
T5589 722-724 Protein denotes ɛy
T5588 671-676 Protein denotes CtBP2
T5587 654-656 Protein denotes ɛy
T5586 635-639 Protein denotes Sox6
T5585 568-570 Protein denotes ɛy
T5584 528-532 Protein denotes Sox6
T5583 418-429 Binding denotes interaction
T5582 412-417 Protein denotes CtBP2
T5581 407-411 Protein denotes Sox6
T5580 332-336 Protein denotes Sox6
T5579 273-275 Protein denotes ɛy
T5578 255-265 Negative_regulation denotes repression
T5577 250-254 Protein denotes Sox6
T5576 237-245 Positive_regulation denotes required
T5575 228-233 Protein denotes CtBP2
T5574 211-222 Binding denotes interaction
T5573 139-148 Gene_expression denotes expressed
T5572 130-135 Protein denotes CtBP2
T5571 110-115 Protein denotes fgf-3
T5570 96-101 Protein denotes CtBP2
T5569 72-81 Gene_expression denotes expressed
T5568 0-4 Protein denotes Sox6
T5550 841-845 Protein denotes Sox6
T5549 799-801 Protein denotes ɛy
T5548 722-724 Protein denotes ɛy
T5547 671-676 Protein denotes CtBP2
T5546 654-656 Protein denotes ɛy
T5545 635-639 Protein denotes Sox6
T5544 568-570 Protein denotes ɛy
T5543 528-532 Protein denotes Sox6
T5542 412-417 Protein denotes CtBP2
T5541 407-411 Protein denotes Sox6
T5540 332-336 Protein denotes Sox6
T5539 273-275 Protein denotes ɛy
T5538 250-254 Protein denotes Sox6
T5537 228-233 Protein denotes CtBP2
T5536 130-135 Protein denotes CtBP2
T5535 110-115 Protein denotes fgf-3
T5534 96-101 Protein denotes CtBP2
T5533 0-4 Protein denotes Sox6
R3903 T5568 T5569 themeOf Sox6,expressed
R3904 T5570 T5568 themeOf CtBP2,Sox6
R3905 T5570 T5569 themeOf CtBP2,expressed
R3906 T5572 T5573 themeOf CtBP2,expressed
R3907 T5574 T5576 causeOf interaction,required
R3908 T5575 T5574 themeOf CtBP2,interaction
R3909 T5578 T5576 themeOf repression,required
R3910 T5578 T5577 themeOf repression,Sox6
R3911 T5579 T5577 themeOf ɛy,Sox6
R3912 T5581 T5583 themeOf Sox6,interaction
R3913 T5582 T5583 themeOf CtBP2,interaction
R3914 T5587 T5586 themeOf ɛy,Sox6
R3915 T5588 T5586 themeOf CtBP2,Sox6
R3916 T5591 T5590 themeOf Sox6,ɛy