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PMC:1359074 / 114-387 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T304 259-262 DT denotes the
T303 256-258 IN denotes in
T302 251-255 NN denotes role
T301 249-250 DT denotes a
T300 243-248 VB denotes plays
T299 238-242 NN denotes Sox6
T298 233-237 IN denotes that
T297 223-232 VB denotes suggested
T296 218-222 VB denotes have
T295 210-217 NN denotes studies
T294 201-209 NNP denotes Previous
T293 196-200 NNP denotes Sry.
T292 194-195 -COMMA- denotes ,
T291 190-194 NN denotes gene
T290 178-189 VB denotes determining
T289 171-177 NN denotes testis
T288 167-170 DT denotes the
T287 164-166 IN denotes in
T286 154-163 VB denotes described
T285 148-153 RB denotes first
T284 146-147 -COMMA- denotes ,
T283 140-146 NN denotes domain
T282 132-139 NN denotes binding
T281 128-131 NN denotes DNA
T280 126-127 -RRB- denotes )
T279 123-126 NN denotes HMG
T278 122-123 -LRB- denotes (
T277 116-121 NN denotes group
T276 107-115 NN denotes mobility
T275 102-106 JJ denotes high
T274 92-101 VB denotes conserved
T273 88-91 DT denotes the
T272 85-87 IN denotes by
T271 77-84 VB denotes defined
T270 74-76 VB denotes is
T269 69-73 WDT denotes that
T268 62-68 NN denotes family
T267 55-61 NN denotes factor
T266 41-54 NN denotes transcription
T265 37-40 NN denotes Sox
T264 33-36 DT denotes the
T263 30-32 IN denotes of
T262 23-29 NN denotes member
T261 21-22 DT denotes a
T260 18-20 VB denotes is
T259 13-17 NN denotes Sox6
R50 T259 T260 arg1Of Sox6,is
R51 T262 T260 arg2Of member,is
R52 T262 T261 arg1Of member,a
R53 T262 T263 arg1Of member,of
R54 T262 T269 arg1Of member,that
R55 T262 T270 arg1Of member,is
R56 T262 T271 arg2Of member,defined
R57 T268 T263 arg2Of family,of
R58 T268 T264 arg1Of family,the
R59 T268 T265 arg1Of family,Sox
R60 T268 T266 arg1Of family,transcription
R61 T268 T267 arg1Of family,factor
R62 T271 T270 arg2Of defined,is
R63 T279 T278 arg2Of HMG,(
R64 T280 T278 arg3Of ),(
R65 T283 T271 arg1Of domain,defined
R66 T283 T272 arg2Of domain,by
R67 T283 T273 arg1Of domain,the
R68 T283 T274 arg2Of domain,conserved
R69 T283 T275 arg1Of domain,high
R70 T283 T276 arg1Of domain,mobility
R71 T283 T277 arg1Of domain,group
R72 T283 T278 arg1Of domain,(
R73 T283 T281 arg1Of domain,DNA
R74 T283 T282 arg1Of domain,binding
R75 T283 T284 arg1Of domain,","
R76 T283 T286 arg2Of domain,described
R77 T286 T285 arg1Of described,first
R78 T286 T287 arg1Of described,in
R79 T289 T287 arg2Of testis,in
R80 T289 T288 arg1Of testis,the
R81 T289 T290 arg1Of testis,determining
R82 T291 T290 arg2Of gene,determining
R83 T291 T296 modOf gene,have
R84 T294 T293 arg1Of Previous,Sry.
R85 T295 T294 arg1Of studies,Previous
R86 T295 T296 arg1Of studies,have
R87 T295 T297 arg1Of studies,suggested
R88 T297 T292 arg1Of suggested,","
R89 T297 T296 arg2Of suggested,have
R90 T299 T300 arg1Of Sox6,plays
R91 T300 T297 arg2Of plays,suggested
R92 T300 T298 arg1Of plays,that
R93 T300 T303 arg1Of plays,in
R94 T302 T300 arg2Of role,plays
R95 T302 T301 arg1Of role,a

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T148 13-17 Protein denotes Sox6
T149 196-199 Protein denotes Sry
T150 238-242 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T474 13-17 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T475 238-242 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T86 171-177 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testis

GO-BP

Id Subject Object Predicate Lexical cue
T110 41-54 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T169 128-139 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T170 128-146 http://purl.obolibrary.org/obo/GO_0050692 denotes DNA binding domain
T171 132-139 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T3 4-12 Sentence denotes Abstract
T4 13-200 Sentence denotes Sox6 is a member of the Sox transcription factor family that is defined by the conserved high mobility group (HMG) DNA binding domain, first described in the testis determining gene, Sry.

simple1

Id Subject Object Predicate Lexical cue
T235 238-242 Protein denotes Sox6
T234 196-199 Protein denotes Sry
T233 13-17 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T878 13-17 Protein denotes Sox6
T879 196-199 Protein denotes Sry
T880 238-242 Protein denotes Sox6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T486 13-17 Protein denotes Sox6
T487 196-199 Protein denotes Sry
T488 238-242 Protein denotes Sox6

DLUT931

Id Subject Object Predicate Lexical cue
T517 13-17 Protein denotes Sox6
T518 196-199 Protein denotes Sry
T519 238-242 Protein denotes Sox6

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T875 167-199 Localization denotes the testis determining gene, Sry
T838 37-40 Protein denotes Sox
T844 13-17 Protein denotes Sox6
T846 167-199 Protein denotes the testis determining gene, Sry
T851 33-68 Protein denotes the Sox transcription factor family
T856 238-242 Protein denotes Sox6
T864 167-199 Protein denotes the testis determining gene, Sry
T865 128-199 Entity denotes DNA binding domain, first described in the testis determining gene, Sry
R576 T846 T875 themeOf "the testis determining gene, Sry","the testis determining gene, Sry"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T628 259-262 DT denotes the
T627 256-258 IN denotes in
T626 251-255 NN denotes role
T625 249-250 DT denotes a
T624 243-248 NNS denotes plays
T623 238-242 JJ denotes Sox6
T622 233-237 IN denotes that
T621 223-232 VBN denotes suggested
T620 218-222 VBP denotes have
T619 210-217 NNS denotes studies
T618 201-209 JJ denotes Previous
T617 199-200 . denotes .
T616 196-199 NNP denotes Sry
T615 194-195 , denotes ,
T614 190-194 NN denotes gene
T613 178-189 VBG denotes determining
T612 171-177 NN denotes testis
T611 167-170 DT denotes the
T610 164-166 IN denotes in
T609 154-163 VBN denotes described
T608 148-153 JJ denotes first
T607 146-147 , denotes ,
T606 140-146 NN denotes domain
T605 132-139 JJ denotes binding
T604 128-131 NNP denotes DNA
T603 126-127 -RRB- denotes )
T602 123-126 NNP denotes HMG
T601 122-123 -LRB- denotes (
T600 116-121 NN denotes group
T599 107-115 NN denotes mobility
T598 102-106 JJ denotes high
T597 92-101 JJ denotes conserved
T596 88-91 DT denotes the
T595 85-87 IN denotes by
T594 77-84 VBN denotes defined
T593 74-76 VBZ denotes is
T592 69-73 WDT denotes that
T591 62-68 NN denotes family
T590 55-61 NN denotes factor
T589 41-54 NN denotes transcription
T588 37-40 NNPS denotes Sox
T587 33-36 DT denotes the
T586 30-32 IN denotes of
T585 23-29 NN denotes member
T584 21-22 DT denotes a
T583 18-20 VBZ denotes is
T582 13-17 NNP denotes Sox6
R279 T583 T583 ROOT is,is
R280 T584 T585 det a,member
R281 T585 T583 attr member,is
R282 T586 T585 prep of,member
R283 T587 T591 det the,family
R284 T588 T591 compound Sox,family
R285 T589 T590 compound transcription,factor
R286 T590 T591 compound factor,family
R287 T591 T586 pobj family,of
R288 T592 T594 nsubjpass that,defined
R289 T593 T594 auxpass is,defined
R290 T594 T585 relcl defined,member
R291 T595 T594 agent by,defined
R292 T596 T600 det the,group
R293 T597 T600 amod conserved,group
R294 T598 T600 amod high,group
R295 T599 T600 compound mobility,group
R296 T600 T595 pobj group,by
R297 T601 T602 punct (,HMG
R298 T602 T600 appos HMG,group
R299 T603 T602 punct ),HMG
R300 T604 T606 compound DNA,domain
R301 T605 T606 amod binding,domain
R302 T606 T600 conj domain,group
R303 T607 T606 punct ",",domain
R304 T608 T609 advmod first,described
R305 T609 T600 acl described,group
R306 T610 T609 prep in,described
R307 T611 T614 det the,gene
R308 T612 T614 amod testis,gene
R309 T613 T614 amod determining,gene
R310 T614 T610 pobj gene,in
R311 T615 T614 punct ",",gene
R312 T616 T614 appos Sry,gene
R313 T617 T583 punct .,is
R314 T618 T619 amod Previous,studies
R315 T619 T621 nsubj studies,suggested
R316 T620 T621 aux have,suggested
R317 T621 T621 ROOT suggested,suggested
R318 T622 T624 mark that,plays
R319 T623 T624 nsubj Sox6,plays
R320 T624 T621 ccomp plays,suggested
R321 T625 T626 det a,role
R322 T626 T624 dobj role,plays
R323 T627 T626 prep in,role

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T208 238-242 Protein denotes Sox6
T207 77-84 Negative_regulation denotes defined
T206 77-84 Negative_regulation denotes defined
T205 140-146 Entity denotes domain
T204 196-199 Protein denotes Sry
T203 37-68 Protein denotes Sox transcription factor family
T202 13-17 Protein denotes Sox6
R28 T202 T206 themeOf Sox6,defined
R29 T203 T207 themeOf Sox transcription factor family,defined
R30 T204 T205 partOf Sry,domain
R31 T205 T206 Site domain,defined
R32 T205 T207 Site domain,defined

testone

Id Subject Object Predicate Lexical cue
T22 13-17 Protein denotes Sox6
T23 196-199 Protein denotes Sry
T24 238-242 Protein denotes Sox6

test3

Id Subject Object Predicate Lexical cue
T47 13-17 Protein denotes Sox6
T48 196-199 Protein denotes Sry
T49 238-242 Protein denotes Sox6
T67 13-17 Protein denotes Sox6
T68 196-199 Protein denotes Sry
T69 238-242 Protein denotes Sox6