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PMC:1359071 / 24275-25160 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10360 85-91 SO:0001026 denotes genome
T10361 245-251 SO:0001026 denotes genome
T10362 309-314 UBERON:0002107 denotes liver
T10363 463-469 SO:0001026 denotes genome
T10364 538-549 SO:0000673 denotes transcripts
T10365 570-577 UBERON:0000991 denotes gonadal
T10366 741-748 SO:0000704 denotes genetic
T10367 749-759 GO:0065007 denotes regulation
T10368 824-829 UBERON:0002107 denotes liver
T10369 830-834 SO:0000704 denotes gene
T10370 830-845 GO:0010467 denotes gene expression

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10464 85-91 SO_EXT:0001026 denotes genome
T10465 245-251 SO_EXT:0001026 denotes genome
T10466 309-314 UBERON:0002107 denotes liver
T10467 463-469 SO_EXT:0001026 denotes genome
T10468 475-494 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes locus on Chromosome
T10469 538-549 SO_EXT:0000673 denotes transcripts
T10470 570-577 UBERON:0000991 denotes gonadal
T10471 578-581 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T10472 666-669 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T10473 694-704 GO_SO_EXT:chromosome denotes Chromosome
T10474 741-748 SO_EXT:0000704 denotes genetic
T10475 749-759 GO:0065007 denotes regulation
T10476 763-766 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T10477 780-790 _FRAGMENT denotes Chromosome
T10478 794-799 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes locus
T10479 824-829 UBERON:0002107 denotes liver
T10480 830-834 SO_EXT:0000704 denotes gene
T10481 830-845 GO:0010467 denotes gene expression
T10482 870-873 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
R2794 T10478 T10477 _lexicallyChainedTo locus,Chromosome

craft-sa-dev

Id Subject Object Predicate Lexical cue
T11125 0-2 TO denotes To
T11126 3-9 VB denotes assess
T11127 25-35 VBD denotes determined
T11128 10-14 DT denotes this
T11129 14-16 , denotes ,
T11130 16-18 PRP denotes we
T11131 19-24 RB denotes first
T11132 36-39 DT denotes the
T11133 40-52 NN denotes distribution
T11134 53-55 IN denotes of
T11135 56-61 DT denotes these
T11136 68-73 NNS denotes eQTLs
T11137 62-67 CD denotes 1,478
T11138 74-80 IN denotes across
T11139 81-84 DT denotes the
T11140 85-91 NN denotes genome
T11141 92-94 IN denotes in
T11142 95-96 CD denotes 2
T11143 97-99 NN denotes cM
T11144 96-97 HYPH denotes -
T11145 100-104 NNS denotes bins
T11146 105-107 IN denotes as
T11147 108-113 VBN denotes shown
T11148 114-116 IN denotes in
T11149 117-123 NN denotes Figure
T11150 124-126 NN denotes 5C
T11151 126-127 . denotes .
T11152 127-359 sentence denotes In order to see if there exist any hotspots for these eQTLs, we tested eQTLs with p < 0.001 for enrichment along the genome in overlapping 2-cM bins against the distribution of all liver eQTLs (Figure 4A) using a Fisher exact test.
T11153 128-130 IN denotes In
T11154 192-198 VBD denotes tested
T11155 131-136 NN denotes order
T11156 137-139 TO denotes to
T11157 140-143 VB denotes see
T11158 144-146 IN denotes if
T11159 153-158 VBP denotes exist
T11160 147-152 EX denotes there
T11161 159-162 DT denotes any
T11162 163-171 NNS denotes hotspots
T11163 172-175 IN denotes for
T11164 176-181 DT denotes these
T11165 182-187 NNS denotes eQTLs
T11166 187-189 , denotes ,
T11167 189-191 PRP denotes we
T11168 199-204 NNS denotes eQTLs
T11169 205-209 IN denotes with
T11170 210-211 NN denotes p
T11171 212-213 SYM denotes <
T11172 214-219 CD denotes 0.001
T11173 220-223 IN denotes for
T11174 224-234 NN denotes enrichment
T11175 235-240 IN denotes along
T11176 241-244 DT denotes the
T11177 245-251 NN denotes genome
T11178 252-254 IN denotes in
T11179 255-266 VBG denotes overlapping
T11180 272-276 NNS denotes bins
T11181 267-268 CD denotes 2
T11182 269-271 NN denotes cM
T11183 268-269 HYPH denotes -
T11184 277-284 IN denotes against
T11185 285-288 DT denotes the
T11186 289-301 NN denotes distribution
T11187 302-304 IN denotes of
T11188 305-308 DT denotes all
T11189 315-320 NNS denotes eQTLs
T11190 309-314 NN denotes liver
T11191 321-322 -LRB- denotes (
T11192 329-331 NN denotes 4A
T11193 322-328 NN denotes Figure
T11194 331-332 -RRB- denotes )
T11195 333-338 VBG denotes using
T11196 339-340 DT denotes a
T11197 354-358 NN denotes test
T11198 341-347 NNP denotes Fisher
T11199 348-353 JJ denotes exact
T11200 358-359 . denotes .
T11201 359-470 sentence denotes Figure 5D shows the significance of enrichment reported as −log10 of the enrichment p-value across the genome.
T11202 360-366 NN denotes Figure
T11203 367-369 NN denotes 5D
T11204 370-375 VBZ denotes shows
T11205 376-379 DT denotes the
T11206 380-392 NN denotes significance
T11207 393-395 IN denotes of
T11208 396-406 NN denotes enrichment
T11209 407-415 VBN denotes reported
T11210 416-418 IN denotes as
T11211 419-420 HYPH denotes −
T11212 420-425 NN denotes log10
T11213 426-428 IN denotes of
T11214 429-432 DT denotes the
T11215 446-451 NN denotes value
T11216 433-443 NN denotes enrichment
T11217 444-445 NN denotes p
T11218 445-446 HYPH denotes -
T11219 452-458 IN denotes across
T11220 459-462 DT denotes the
T11221 463-469 NN denotes genome
T11222 469-470 . denotes .
T11223 470-593 sentence denotes One locus on Chromosome 19 was significantly enriched for eQTLs of transcripts correlated with the gonadal fat mass trait.
T11224 471-474 CD denotes One
T11225 475-480 NN denotes locus
T11226 516-524 VBN denotes enriched
T11227 481-483 IN denotes on
T11228 484-494 NN denotes Chromosome
T11229 495-497 CD denotes 19
T11230 498-501 VBD denotes was
T11231 502-515 RB denotes significantly
T11232 525-528 IN denotes for
T11233 529-534 NNS denotes eQTLs
T11234 535-537 IN denotes of
T11235 538-549 NNS denotes transcripts
T11236 550-560 VBN denotes correlated
T11237 561-565 IN denotes with
T11238 566-569 DT denotes the
T11239 587-592 NN denotes trait
T11240 570-577 JJ denotes gonadal
T11241 582-586 NN denotes mass
T11242 578-581 NN denotes fat
T11243 592-593 . denotes .
T11244 593-717 sentence denotes As anticipated, there was an overlap of a correlated eQTL hotspot and a fat mass cQTL, specifically Chromosome 19 at 40 cM.
T11245 594-596 IN denotes As
T11246 597-608 VBN denotes anticipated
T11247 616-619 VBD denotes was
T11248 608-610 , denotes ,
T11249 610-615 EX denotes there
T11250 620-622 DT denotes an
T11251 623-630 NN denotes overlap
T11252 631-633 IN denotes of
T11253 634-635 DT denotes a
T11254 652-659 NN denotes hotspot
T11255 636-646 VBN denotes correlated
T11256 647-651 NN denotes eQTL
T11257 660-663 CC denotes and
T11258 664-665 DT denotes a
T11259 675-679 NN denotes cQTL
T11260 666-669 NN denotes fat
T11261 670-674 NN denotes mass
T11262 679-681 , denotes ,
T11263 681-693 RB denotes specifically
T11264 694-704 NN denotes Chromosome
T11265 705-707 CD denotes 19
T11266 708-710 IN denotes at
T11267 711-713 CD denotes 40
T11268 714-716 NN denotes cM
T11269 716-717 . denotes .
T11270 717-885 sentence denotes This suggests that the genetic regulation of fat mass for the Chromosome 19 locus is more closely tied to liver gene expression than are the other four fat mass cQTLs.
T11271 718-722 DT denotes This
T11272 723-731 VBZ denotes suggests
T11273 732-736 IN denotes that
T11274 816-820 VBN denotes tied
T11275 737-740 DT denotes the
T11276 749-759 NN denotes regulation
T11277 741-748 JJ denotes genetic
T11278 760-762 IN denotes of
T11279 763-766 NN denotes fat
T11280 767-771 NN denotes mass
T11281 772-775 IN denotes for
T11282 776-779 DT denotes the
T11283 794-799 NN denotes locus
T11284 780-790 NN denotes Chromosome
T11285 791-793 CD denotes 19
T11286 800-802 VBZ denotes is
T11287 803-807 RBR denotes more
T11288 808-815 RB denotes closely
T11289 821-823 IN denotes to
T11290 824-829 NN denotes liver
T11291 835-845 NN denotes expression
T11292 830-834 NN denotes gene
T11293 846-850 IN denotes than
T11294 851-854 VBP denotes are
T11295 855-858 DT denotes the
T11296 879-884 NNS denotes cQTLs
T11297 859-864 JJ denotes other
T11298 865-869 CD denotes four
T11299 870-873 NN denotes fat
T11300 874-878 NN denotes mass
T11301 884-885 . denotes .
R3365 T11125 T11126 aux To,assess
R3366 T11126 T11127 advcl assess,determined
R3367 T11128 T11126 dobj this,assess
R3368 T11129 T11127 punct ", ",determined
R3369 T11130 T11127 nsubj we,determined
R3370 T11131 T11127 advmod first,determined
R3371 T11132 T11133 det the,distribution
R3372 T11133 T11127 dobj distribution,determined
R3373 T11134 T11133 prep of,distribution
R3374 T11135 T11136 det these,eQTLs
R3375 T11136 T11134 pobj eQTLs,of
R3376 T11137 T11136 nummod "1,478",eQTLs
R3377 T11138 T11133 prep across,distribution
R3378 T11139 T11140 det the,genome
R3379 T11140 T11138 pobj genome,across
R3380 T11141 T11127 prep in,determined
R3381 T11142 T11143 nummod 2,cM
R3382 T11143 T11145 compound cM,bins
R3383 T11144 T11143 punct -,cM
R3384 T11145 T11141 pobj bins,in
R3385 T11146 T11147 mark as,shown
R3386 T11147 T11127 advcl shown,determined
R3387 T11148 T11147 prep in,shown
R3388 T11149 T11150 compound Figure,5C
R3389 T11150 T11148 pobj 5C,in
R3390 T11151 T11127 punct .,determined
R3391 T11153 T11154 prep In,tested
R3392 T11155 T11153 pobj order,In
R3393 T11156 T11157 aux to,see
R3394 T11157 T11155 acl see,order
R3395 T11158 T11159 mark if,exist
R3396 T11159 T11157 ccomp exist,see
R3397 T11160 T11159 expl there,exist
R3398 T11161 T11162 det any,hotspots
R3399 T11162 T11159 dobj hotspots,exist
R3400 T11163 T11162 prep for,hotspots
R3401 T11164 T11165 det these,eQTLs
R3402 T11165 T11163 pobj eQTLs,for
R3403 T11166 T11154 punct ", ",tested
R3404 T11167 T11154 nsubj we,tested
R3405 T11168 T11154 dobj eQTLs,tested
R3406 T11169 T11168 prep with,eQTLs
R3407 T11170 T11169 pobj p,with
R3408 T11171 T11172 punct <,0.001
R3409 T11172 T11170 amod 0.001,p
R3410 T11173 T11154 prep for,tested
R3411 T11174 T11173 pobj enrichment,for
R3412 T11175 T11174 prep along,enrichment
R3413 T11176 T11177 det the,genome
R3414 T11177 T11175 pobj genome,along
R3415 T11178 T11154 prep in,tested
R3416 T11179 T11180 amod overlapping,bins
R3417 T11180 T11178 pobj bins,in
R3418 T11181 T11182 nummod 2,cM
R3419 T11182 T11180 compound cM,bins
R3420 T11183 T11182 punct -,cM
R3421 T11184 T11154 prep against,tested
R3422 T11185 T11186 det the,distribution
R3423 T11186 T11184 pobj distribution,against
R3424 T11187 T11186 prep of,distribution
R3425 T11188 T11189 det all,eQTLs
R3426 T11189 T11187 pobj eQTLs,of
R3427 T11196 T11197 det a,test
R3428 T11190 T11189 compound liver,eQTLs
R3429 T11197 T11195 dobj test,using
R3430 T11198 T11197 nmod Fisher,test
R3431 T11191 T11192 punct (,4A
R3432 T11199 T11197 amod exact,test
R3433 T11200 T11154 punct .,tested
R3434 T11192 T11189 parataxis 4A,eQTLs
R3435 T11202 T11203 compound Figure,5D
R3436 T11203 T11204 nsubj 5D,shows
R3437 T11193 T11192 compound Figure,4A
R3438 T11205 T11206 det the,significance
R3439 T11194 T11192 punct ),4A
R3440 T11206 T11204 dobj significance,shows
R3441 T11207 T11206 prep of,significance
R3442 T11208 T11207 pobj enrichment,of
R3443 T11195 T11154 advcl using,tested
R3444 T11209 T11206 acl reported,significance
R3445 T11210 T11209 prep as,reported
R3447 T11211 T11212 punct −,log10
R3448 T11212 T11210 pobj log10,as
R3449 T11213 T11212 prep of,log10
R3450 T11214 T11215 det the,value
R3452 T11215 T11213 pobj value,of
R3453 T11216 T11215 compound enrichment,value
R3454 T11217 T11215 compound p,value
R3456 T11218 T11215 punct -,value
R3457 T11219 T11209 prep across,reported
R3458 T11220 T11221 det the,genome
R3459 T11221 T11219 pobj genome,across
R3461 T11222 T11204 punct .,shows
R3463 T11224 T11225 nummod One,locus
R3464 T11225 T11226 nsubjpass locus,enriched
R3466 T11227 T11225 prep on,locus
R3467 T11228 T11227 pobj Chromosome,on
R3468 T11229 T11228 nummod 19,Chromosome
R3470 T11230 T11226 auxpass was,enriched
R3471 T11231 T11226 advmod significantly,enriched
R3472 T11232 T11226 prep for,enriched
R3473 T11233 T11232 pobj eQTLs,for
R3477 T11234 T11233 prep of,eQTLs
R3479 T11235 T11234 pobj transcripts,of
R3480 T11236 T11235 acl correlated,transcripts
R3481 T11237 T11236 prep with,correlated
R3483 T11238 T11239 det the,trait
R3484 T11239 T11237 pobj trait,with
R3486 T11240 T11241 amod gonadal,mass
R3487 T11241 T11239 compound mass,trait
R3488 T11242 T11241 compound fat,mass
R3489 T11243 T11226 punct .,enriched
R3491 T11245 T11246 mark As,anticipated
R3492 T11246 T11247 advcl anticipated,was
R3494 T11248 T11247 punct ", ",was
R3496 T11249 T11247 expl there,was
R3497 T11250 T11251 det an,overlap
R3500 T11251 T11247 attr overlap,was
R3502 T11252 T11251 prep of,overlap
R3503 T11253 T11254 det a,hotspot
R3504 T11254 T11252 pobj hotspot,of
R3506 T11255 T11254 amod correlated,hotspot
R3507 T11256 T11254 compound eQTL,hotspot
R3508 T11257 T11254 cc and,hotspot
R3510 T11258 T11259 det a,cQTL
R3511 T11259 T11254 conj cQTL,hotspot
R3513 T11260 T11261 compound fat,mass
R3514 T11261 T11259 compound mass,cQTL
R3515 T11262 T11251 punct ", ",overlap
R3517 T11263 T11264 advmod specifically,Chromosome
R3518 T11264 T11251 appos Chromosome,overlap
R3519 T11265 T11264 nummod 19,Chromosome
R3520 T11266 T11264 prep at,Chromosome
R3521 T11267 T11268 nummod 40,cM
R3522 T11268 T11266 pobj cM,at
R3524 T11269 T11247 punct .,was
R3526 T11271 T11272 nsubj This,suggests
R3528 T11273 T11274 mark that,tied
R3529 T11274 T11272 ccomp tied,suggests
R3530 T11275 T11276 det the,regulation
R3532 T11276 T11274 nsubjpass regulation,tied
R3533 T11277 T11276 amod genetic,regulation
R3534 T11278 T11276 prep of,regulation
R3535 T11279 T11280 compound fat,mass
R3536 T11280 T11278 pobj mass,of
R3538 T11281 T11276 prep for,regulation
R3539 T11282 T11283 det the,locus
R3541 T11283 T11281 pobj locus,for
R3542 T11284 T11283 nmod Chromosome,locus
R3543 T11285 T11284 nummod 19,Chromosome
R3545 T11286 T11274 auxpass is,tied
R3546 T11287 T11288 advmod more,closely
R3547 T11288 T11274 advmod closely,tied
R3549 T11289 T11274 prep to,tied
R3550 T11290 T11291 compound liver,expression
R3551 T11291 T11289 pobj expression,to
R3553 T11292 T11291 compound gene,expression
R3554 T11293 T11294 mark than,are
R3555 T11294 T11274 advcl are,tied
R3556 T11295 T11296 det the,cQTLs
R3557 T11296 T11294 nsubj cQTLs,are
R3559 T11297 T11296 amod other,cQTLs
R3560 T11298 T11296 nummod four,cQTLs
R3561 T11299 T11300 compound fat,mass
R3563 T11300 T11296 compound mass,cQTLs
R3564 T11301 T11272 punct .,suggests