PMC:1310901 / 877-1143 JSONTXT

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    bionlp-st-ge-2016-reference-eval

    {"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T881","span":{"begin":0,"end":5},"obj":"Protein"},{"id":"T882","span":{"begin":6,"end":16},"obj":"Gene_expression"},{"id":"T883","span":{"begin":45,"end":50},"obj":"Protein"},{"id":"T884","span":{"begin":106,"end":115},"obj":"Regulation"},{"id":"T885","span":{"begin":116,"end":121},"obj":"Protein"},{"id":"T886","span":{"begin":122,"end":135},"obj":"Transcription"},{"id":"T887","span":{"begin":157,"end":162},"obj":"Protein"},{"id":"T888","span":{"begin":163,"end":171},"obj":"Gene_expression"}],"relations":[{"id":"R636","pred":"themeOf","subj":"T881","obj":"T882"},{"id":"R638","pred":"themeOf","subj":"T885","obj":"T886"},{"id":"R639","pred":"themeOf","subj":"T886","obj":"T884"},{"id":"R640","pred":"themeOf","subj":"T887","obj":"T888"}],"text":"IRF-4 expression in hematopoietic cells, the IRF-4 promoter methylation status was found to significantly influence IRF-4 transcription. First, treatment of IRF-4-negative lymphoid, myeloid and monocytic cell lines with the methylation-inhibitor 5-aza-2-deoxycytidin"}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T817","span":{"begin":0,"end":5},"obj":"Protein"},{"id":"T818","span":{"begin":6,"end":16},"obj":"Gene_expression"},{"id":"T819","span":{"begin":45,"end":50},"obj":"Protein"},{"id":"T820","span":{"begin":106,"end":115},"obj":"Regulation"},{"id":"T821","span":{"begin":116,"end":121},"obj":"Protein"},{"id":"T822","span":{"begin":122,"end":135},"obj":"Transcription"},{"id":"T823","span":{"begin":157,"end":162},"obj":"Protein"},{"id":"T824","span":{"begin":163,"end":171},"obj":"Gene_expression"}],"relations":[{"id":"R603","pred":"themeOf","subj":"T817","obj":"T818"},{"id":"R605","pred":"themeOf","subj":"T821","obj":"T822"},{"id":"R606","pred":"themeOf","subj":"T822","obj":"T820"},{"id":"R607","pred":"themeOf","subj":"T823","obj":"T824"}],"attributes":[{"id":"M21","pred":"Negation","subj":"T824","obj":"true"}],"text":"IRF-4 expression in hematopoietic cells, the IRF-4 promoter methylation status was found to significantly influence IRF-4 transcription. First, treatment of IRF-4-negative lymphoid, myeloid and monocytic cell lines with the methylation-inhibitor 5-aza-2-deoxycytidin"}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T700","span":{"begin":34,"end":39},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"IRF-4 expression in hematopoietic cells, the IRF-4 promoter methylation status was found to significantly influence IRF-4 transcription. First, treatment of IRF-4-negative lymphoid, myeloid and monocytic cell lines with the methylation-inhibitor 5-aza-2-deoxycytidin"}

    pmc-enju-pas

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    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T557","span":{"begin":0,"end":5},"obj":"NN"},{"id":"T558","span":{"begin":6,"end":16},"obj":"NN"},{"id":"T559","span":{"begin":17,"end":19},"obj":"IN"},{"id":"T560","span":{"begin":20,"end":33},"obj":"JJ"},{"id":"T561","span":{"begin":34,"end":39},"obj":"NNS"},{"id":"T562","span":{"begin":39,"end":40},"obj":","},{"id":"T563","span":{"begin":41,"end":44},"obj":"DT"},{"id":"T564","span":{"begin":45,"end":50},"obj":"NNP"},{"id":"T565","span":{"begin":51,"end":59},"obj":"NN"},{"id":"T566","span":{"begin":60,"end":71},"obj":"NN"},{"id":"T567","span":{"begin":72,"end":78},"obj":"NN"},{"id":"T568","span":{"begin":79,"end":82},"obj":"VBD"},{"id":"T569","span":{"begin":83,"end":88},"obj":"VBN"},{"id":"T570","span":{"begin":89,"end":91},"obj":"TO"},{"id":"T571","span":{"begin":92,"end":105},"obj":"RB"},{"id":"T572","span":{"begin":106,"end":115},"obj":"VB"},{"id":"T573","span":{"begin":116,"end":121},"obj":"JJ"},{"id":"T574","span":{"begin":122,"end":135},"obj":"NN"},{"id":"T575","span":{"begin":135,"end":136},"obj":"."},{"id":"T576","span":{"begin":137,"end":142},"obj":"RB"},{"id":"T577","span":{"begin":142,"end":143},"obj":","},{"id":"T578","span":{"begin":144,"end":153},"obj":"NN"},{"id":"T579","span":{"begin":154,"end":156},"obj":"IN"},{"id":"T580","span":{"begin":157,"end":171},"obj":"JJ"},{"id":"T581","span":{"begin":172,"end":180},"obj":"NN"},{"id":"T582","span":{"begin":180,"end":181},"obj":","},{"id":"T583","span":{"begin":182,"end":189},"obj":"JJ"},{"id":"T584","span":{"begin":190,"end":193},"obj":"CC"},{"id":"T585","span":{"begin":194,"end":203},"obj":"JJ"},{"id":"T586","span":{"begin":204,"end":208},"obj":"NN"},{"id":"T587","span":{"begin":209,"end":214},"obj":"NNS"},{"id":"T588","span":{"begin":215,"end":219},"obj":"IN"},{"id":"T589","span":{"begin":220,"end":223},"obj":"DT"},{"id":"T590","span":{"begin":224,"end":245},"obj":"NN"}],"relations":[{"id":"R446","pred":"compound","subj":"T557","obj":"T558"},{"id":"R448","pred":"prep","subj":"T559","obj":"T558"},{"id":"R449","pred":"amod","subj":"T560","obj":"T561"},{"id":"R450","pred":"pobj","subj":"T561","obj":"T559"},{"id":"R451","pred":"punct","subj":"T562","obj":"T569"},{"id":"R452","pred":"det","subj":"T563","obj":"T567"},{"id":"R453","pred":"compound","subj":"T564","obj":"T567"},{"id":"R454","pred":"compound","subj":"T565","obj":"T567"},{"id":"R455","pred":"compound","subj":"T566","obj":"T567"},{"id":"R456","pred":"nsubjpass","subj":"T567","obj":"T569"},{"id":"R457","pred":"auxpass","subj":"T568","obj":"T569"},{"id":"R458","pred":"ROOT","subj":"T569","obj":"T569"},{"id":"R459","pred":"aux","subj":"T570","obj":"T572"},{"id":"R460","pred":"advmod","subj":"T571","obj":"T572"},{"id":"R461","pred":"xcomp","subj":"T572","obj":"T569"},{"id":"R462","pred":"compound","subj":"T573","obj":"T574"},{"id":"R463","pred":"dobj","subj":"T574","obj":"T572"},{"id":"R464","pred":"punct","subj":"T575","obj":"T569"},{"id":"R468","pred":"prep","subj":"T579","obj":"T578"},{"id":"R469","pred":"amod","subj":"T580","obj":"T581"},{"id":"R470","pred":"pobj","subj":"T581","obj":"T579"},{"id":"R471","pred":"punct","subj":"T582","obj":"T581"},{"id":"R472","pred":"conj","subj":"T583","obj":"T581"},{"id":"R473","pred":"cc","subj":"T584","obj":"T583"},{"id":"R474","pred":"conj","subj":"T585","obj":"T583"},{"id":"R475","pred":"compound","subj":"T586","obj":"T587"},{"id":"R476","pred":"pobj","subj":"T587","obj":"T578"},{"id":"R477","pred":"prep","subj":"T588","obj":"T587"}],"text":"IRF-4 expression in hematopoietic cells, the IRF-4 promoter methylation status was found to significantly influence IRF-4 transcription. First, treatment of IRF-4-negative lymphoid, myeloid and monocytic cell lines with the methylation-inhibitor 5-aza-2-deoxycytidin"}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T120","span":{"begin":122,"end":135},"obj":"http://purl.obolibrary.org/obo/GO_0006351"},{"id":"T124","span":{"begin":60,"end":71},"obj":"http://purl.obolibrary.org/obo/GO_0032259"},{"id":"T125","span":{"begin":224,"end":235},"obj":"http://purl.obolibrary.org/obo/GO_0032259"}],"text":"IRF-4 expression in hematopoietic cells, the IRF-4 promoter methylation status was found to significantly influence IRF-4 transcription. First, treatment of IRF-4-negative lymphoid, myeloid and monocytic cell lines with the methylation-inhibitor 5-aza-2-deoxycytidin"}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T851","span":{"begin":0,"end":5},"obj":"Protein"},{"id":"T852","span":{"begin":45,"end":59},"obj":"Protein"},{"id":"T853","span":{"begin":116,"end":121},"obj":"Protein"},{"id":"T854","span":{"begin":6,"end":16},"obj":"Gene_expression"},{"id":"T855","span":{"begin":122,"end":135},"obj":"Transcription"},{"id":"T857","span":{"begin":106,"end":115},"obj":"Regulation"}],"relations":[{"id":"R621","pred":"themeOf","subj":"T851","obj":"T854"},{"id":"R622","pred":"themeOf","subj":"T853","obj":"T855"},{"id":"R624","pred":"themeOf","subj":"T855","obj":"T857"}],"text":"IRF-4 expression in hematopoietic cells, the IRF-4 promoter methylation status was found to significantly influence IRF-4 transcription. First, treatment of IRF-4-negative lymphoid, myeloid and monocytic cell lines with the methylation-inhibitor 5-aza-2-deoxycytidin"}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T84","span":{"begin":0,"end":5},"obj":"Protein"},{"id":"T85","span":{"begin":6,"end":16},"obj":"Gene_expression"},{"id":"T86","span":{"begin":45,"end":50},"obj":"Protein"},{"id":"T87","span":{"begin":106,"end":115},"obj":"Regulation"},{"id":"T88","span":{"begin":116,"end":121},"obj":"Protein"},{"id":"T89","span":{"begin":122,"end":135},"obj":"Transcription"},{"id":"T90","span":{"begin":157,"end":162},"obj":"Protein"},{"id":"T91","span":{"begin":163,"end":171},"obj":"Gene_expression"}],"relations":[{"id":"R654","pred":"themeOf","subj":"T84","obj":"T85"},{"id":"R656","pred":"themeOf","subj":"T88","obj":"T89"},{"id":"R657","pred":"themeOf","subj":"T89","obj":"T87"},{"id":"R658","pred":"themeOf","subj":"T90","obj":"T91"}],"attributes":[{"id":"M26","pred":"Negation","subj":"T91","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"IRF-4 expression in hematopoietic cells, the IRF-4 promoter methylation status was found to significantly influence IRF-4 transcription. First, treatment of IRF-4-negative lymphoid, myeloid and monocytic cell lines with the methylation-inhibitor 5-aza-2-deoxycytidin"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T403","span":{"begin":0,"end":5},"obj":"Q15306"},{"id":"T404","span":{"begin":45,"end":50},"obj":"Q15306"},{"id":"T405","span":{"begin":116,"end":121},"obj":"Q15306"},{"id":"T406","span":{"begin":157,"end":162},"obj":"Q15306"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"IRF-4 expression in hematopoietic cells, the IRF-4 promoter methylation status was found to significantly influence IRF-4 transcription. First, treatment of IRF-4-negative lymphoid, myeloid and monocytic cell lines with the methylation-inhibitor 5-aza-2-deoxycytidin"}

    test2

    {"project":"test2","denotations":[{"id":"T48","span":{"begin":0,"end":5},"obj":"Protein"},{"id":"T49","span":{"begin":6,"end":16},"obj":"Gene_expression"},{"id":"T50","span":{"begin":45,"end":50},"obj":"Protein"},{"id":"T51","span":{"begin":106,"end":115},"obj":"Regulation"},{"id":"T52","span":{"begin":116,"end":121},"obj":"Protein"},{"id":"T53","span":{"begin":122,"end":135},"obj":"Transcription"},{"id":"T54","span":{"begin":157,"end":162},"obj":"Protein"},{"id":"T55","span":{"begin":163,"end":171},"obj":"Gene_expression"}],"relations":[{"id":"R25","pred":"themeOf","subj":"T48","obj":"T49"},{"id":"R27","pred":"themeOf","subj":"T52","obj":"T53"},{"id":"R28","pred":"themeOf","subj":"T53","obj":"T51"},{"id":"R29","pred":"themeOf","subj":"T54","obj":"T55"}],"attributes":[{"id":"M10","pred":"Speculation","subj":"T50","obj":"true"}],"text":"IRF-4 expression in hematopoietic cells, the IRF-4 promoter methylation status was found to significantly influence IRF-4 transcription. First, treatment of IRF-4-negative lymphoid, myeloid and monocytic cell lines with the methylation-inhibitor 5-aza-2-deoxycytidin"}