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PMC:1310901 / 877-1143 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T881 0-5 Protein denotes IRF-4
T882 6-16 Gene_expression denotes expression
T883 45-50 Protein denotes IRF-4
T884 106-115 Regulation denotes influence
T885 116-121 Protein denotes IRF-4
T886 122-135 Transcription denotes transcription
T887 157-162 Protein denotes IRF-4
T888 163-171 Gene_expression denotes negative
R636 T881 T882 themeOf IRF-4,expression
R638 T885 T886 themeOf IRF-4,transcription
R639 T886 T884 themeOf transcription,influence
R640 T887 T888 themeOf IRF-4,negative

events-check-again

Id Subject Object Predicate Lexical cue Negation
T817 0-5 Protein denotes IRF-4
T818 6-16 Gene_expression denotes expression
T819 45-50 Protein denotes IRF-4
T820 106-115 Regulation denotes influence
T821 116-121 Protein denotes IRF-4
T822 122-135 Transcription denotes transcription
T823 157-162 Protein denotes IRF-4
T824 163-171 Gene_expression denotes negative true
R603 T817 T818 themeOf IRF-4,expression
R605 T821 T822 themeOf IRF-4,transcription
R606 T822 T820 themeOf transcription,influence
R607 T823 T824 themeOf IRF-4,negative

GO-CC

Id Subject Object Predicate Lexical cue
T700 34-39 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T263 0-5 NN denotes IRF-4
T264 6-16 NN denotes expression
T265 17-19 IN denotes in
T266 20-33 JJ denotes hematopoietic
T267 34-39 NN denotes cells
T268 39-40 -COMMA- denotes ,
T269 41-44 DT denotes the
T270 45-50 NN denotes IRF-4
T271 51-59 NN denotes promoter
T272 60-71 NN denotes methylation
T273 72-78 NN denotes status
T274 79-82 VB denotes was
T275 83-88 VB denotes found
T276 89-91 TO denotes to
T277 92-105 RB denotes significantly
T278 106-115 VB denotes influence
T279 116-121 NN denotes IRF-4
T280 122-135 NN denotes transcription
T281 137-142 RB denotes First
T282 142-143 -COMMA- denotes ,
T283 144-153 NN denotes treatment
T284 154-156 IN denotes of
T285 157-171 JJ denotes IRF-4-negative
T286 172-180 JJ denotes lymphoid
T287 180-181 -COMMA- denotes ,
T288 182-189 JJ denotes myeloid
T289 190-193 CC denotes and
T290 194-203 JJ denotes monocytic
T291 204-208 NN denotes cell
T292 209-214 NN denotes lines
T293 215-219 IN denotes with
T294 220-223 DT denotes the
T295 224-245 NN denotes methylation-inhibitor
R180 T264 T263 arg1Of expression,IRF-4
R181 T264 T265 arg1Of expression,in
R182 T267 T265 arg2Of cells,in
R183 T267 T266 arg1Of cells,hematopoietic
R184 T273 T269 arg1Of status,the
R185 T273 T270 arg1Of status,IRF-4
R186 T273 T271 arg1Of status,promoter
R187 T273 T272 arg1Of status,methylation
R188 T273 T274 arg1Of status,was
R189 T273 T275 arg2Of status,found
R190 T273 T278 arg1Of status,influence
R192 T275 T268 arg1Of found,","
R193 T275 T274 arg2Of found,was
R194 T278 T275 arg3Of influence,found
R195 T278 T276 arg1Of influence,to
R196 T278 T277 arg1Of influence,significantly
R197 T280 T278 arg2Of transcription,influence
R198 T280 T279 arg1Of transcription,IRF-4
R199 T283 T284 arg1Of treatment,of
R201 T286 T287 arg1Of lymphoid,","
R202 T287 T289 arg1Of ",",and
R203 T288 T287 arg2Of myeloid,","
R204 T290 T289 arg2Of monocytic,and
R205 T292 T284 arg2Of lines,of
R206 T292 T285 arg1Of lines,IRF-4-negative
R207 T292 T286 arg1Of lines,lymphoid
R208 T292 T288 arg1Of lines,myeloid
R209 T292 T290 arg1Of lines,monocytic
R210 T292 T291 arg1Of lines,cell
R211 T292 T293 arg1Of lines,with

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T557 0-5 NN denotes IRF-4
T558 6-16 NN denotes expression
T559 17-19 IN denotes in
T560 20-33 JJ denotes hematopoietic
T561 34-39 NNS denotes cells
T562 39-40 , denotes ,
T563 41-44 DT denotes the
T564 45-50 NNP denotes IRF-4
T565 51-59 NN denotes promoter
T566 60-71 NN denotes methylation
T567 72-78 NN denotes status
T568 79-82 VBD denotes was
T569 83-88 VBN denotes found
T570 89-91 TO denotes to
T571 92-105 RB denotes significantly
T572 106-115 VB denotes influence
T573 116-121 JJ denotes IRF-4
T574 122-135 NN denotes transcription
T575 135-136 . denotes .
T576 137-142 RB denotes First
T577 142-143 , denotes ,
T578 144-153 NN denotes treatment
T579 154-156 IN denotes of
T580 157-171 JJ denotes IRF-4-negative
T581 172-180 NN denotes lymphoid
T582 180-181 , denotes ,
T583 182-189 JJ denotes myeloid
T584 190-193 CC denotes and
T585 194-203 JJ denotes monocytic
T586 204-208 NN denotes cell
T587 209-214 NNS denotes lines
T588 215-219 IN denotes with
T589 220-223 DT denotes the
T590 224-245 NN denotes methylation-inhibitor
R446 T557 T558 compound IRF-4,expression
R448 T559 T558 prep in,expression
R449 T560 T561 amod hematopoietic,cells
R450 T561 T559 pobj cells,in
R451 T562 T569 punct ",",found
R452 T563 T567 det the,status
R453 T564 T567 compound IRF-4,status
R454 T565 T567 compound promoter,status
R455 T566 T567 compound methylation,status
R456 T567 T569 nsubjpass status,found
R457 T568 T569 auxpass was,found
R458 T569 T569 ROOT found,found
R459 T570 T572 aux to,influence
R460 T571 T572 advmod significantly,influence
R461 T572 T569 xcomp influence,found
R462 T573 T574 compound IRF-4,transcription
R463 T574 T572 dobj transcription,influence
R464 T575 T569 punct .,found
R468 T579 T578 prep of,treatment
R469 T580 T581 amod IRF-4-negative,lymphoid
R470 T581 T579 pobj lymphoid,of
R471 T582 T581 punct ",",lymphoid
R472 T583 T581 conj myeloid,lymphoid
R473 T584 T583 cc and,myeloid
R474 T585 T583 conj monocytic,myeloid
R475 T586 T587 compound cell,lines
R476 T587 T578 pobj lines,treatment
R477 T588 T587 prep with,lines

GO-BP

Id Subject Object Predicate Lexical cue
T120 122-135 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T124 60-71 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation
T125 224-235 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T851 0-5 Protein denotes IRF-4
T852 45-59 Protein denotes IRF-4 promoter
T853 116-121 Protein denotes IRF-4
T854 6-16 Gene_expression denotes expression
T855 122-135 Transcription denotes transcription
T857 106-115 Regulation denotes influence
R621 T851 T854 themeOf IRF-4,expression
R622 T853 T855 themeOf IRF-4,transcription
R624 T855 T857 themeOf transcription,influence

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T84 0-5 Protein denotes IRF-4
T85 6-16 Gene_expression denotes expression
T86 45-50 Protein denotes IRF-4
T87 106-115 Regulation denotes influence
T88 116-121 Protein denotes IRF-4
T89 122-135 Transcription denotes transcription
T90 157-162 Protein denotes IRF-4
T91 163-171 Gene_expression denotes negative true
R654 T84 T85 themeOf IRF-4,expression
R656 T88 T89 themeOf IRF-4,transcription
R657 T89 T87 themeOf transcription,influence
R658 T90 T91 themeOf IRF-4,negative

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T403 0-5 Q15306 denotes IRF-4
T404 45-50 Q15306 denotes IRF-4
T405 116-121 Q15306 denotes IRF-4
T406 157-162 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue Speculation
T48 0-5 Protein denotes IRF-4
T49 6-16 Gene_expression denotes expression
T50 45-50 Protein denotes IRF-4 true
T51 106-115 Regulation denotes influence
T52 116-121 Protein denotes IRF-4
T53 122-135 Transcription denotes transcription
T54 157-162 Protein denotes IRF-4
T55 163-171 Gene_expression denotes negative
R25 T48 T49 themeOf IRF-4,expression
R27 T52 T53 themeOf IRF-4,transcription
R28 T53 T51 themeOf transcription,influence
R29 T54 T55 themeOf IRF-4,negative