PMC:1310901 / 8577-8716 JSONTXT

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    bionlp-st-ge-2016-reference-eval

    {"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T4333","span":{"begin":38,"end":43},"obj":"Protein"},{"id":"T4334","span":{"begin":44,"end":49},"obj":"Protein"},{"id":"T4335","span":{"begin":51,"end":55},"obj":"Protein"},{"id":"T4336","span":{"begin":115,"end":122},"obj":"Protein"}],"relations":[{"id":"R3513","pred":"equivalentTo","subj":"T4334","obj":"T4333"},{"id":"R3514","pred":"equivalentTo","subj":"T4335","obj":"T4333"}],"text":"The primary antibodies were goat anti-IRF-4/ICSAT (M-17) (Santa Cruz Biotechnology, Santa Cruz, CA) and mouse anti-β-actin (AC-74) (Sigma)."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T4291","span":{"begin":38,"end":43},"obj":"Protein"},{"id":"T4292","span":{"begin":44,"end":49},"obj":"Protein"},{"id":"T4293","span":{"begin":51,"end":55},"obj":"Protein"},{"id":"T4294","span":{"begin":115,"end":122},"obj":"Protein"}],"relations":[{"id":"R3499","pred":"equivalentTo","subj":"T4292","obj":"T4291"},{"id":"R3500","pred":"equivalentTo","subj":"T4293","obj":"T4291"}],"text":"The primary antibodies were goat anti-IRF-4/ICSAT (M-17) (Santa Cruz Biotechnology, Santa Cruz, CA) and mouse anti-β-actin (AC-74) (Sigma)."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T4187","span":{"begin":12,"end":22},"obj":"http://purl.obolibrary.org/obo/GO_0019815"},{"id":"T4190","span":{"begin":12,"end":22},"obj":"http://purl.obolibrary.org/obo/GO_0042571"}],"text":"The primary antibodies were goat anti-IRF-4/ICSAT (M-17) (Santa Cruz Biotechnology, Santa Cruz, CA) and mouse anti-β-actin (AC-74) (Sigma)."}

    sentences

    {"project":"sentences","denotations":[{"id":"T3420","span":{"begin":0,"end":139},"obj":"Sentence"},{"id":"T63","span":{"begin":0,"end":139},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"The primary antibodies were goat anti-IRF-4/ICSAT (M-17) (Santa Cruz Biotechnology, Santa Cruz, CA) and mouse anti-β-actin (AC-74) (Sigma)."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T3759","span":{"begin":0,"end":3},"obj":"DT"},{"id":"T3760","span":{"begin":4,"end":11},"obj":"JJ"},{"id":"T3761","span":{"begin":12,"end":22},"obj":"NN"},{"id":"T3762","span":{"begin":23,"end":27},"obj":"VB"},{"id":"T3763","span":{"begin":28,"end":32},"obj":"NN"},{"id":"T3764","span":{"begin":33,"end":49},"obj":"NN"},{"id":"T3765","span":{"begin":50,"end":51},"obj":"-LRB-"},{"id":"T3766","span":{"begin":51,"end":55},"obj":"NN"},{"id":"T3767","span":{"begin":55,"end":56},"obj":"-RRB-"},{"id":"T3768","span":{"begin":57,"end":58},"obj":"-LRB-"},{"id":"T3769","span":{"begin":58,"end":63},"obj":"NNP"},{"id":"T3770","span":{"begin":64,"end":68},"obj":"NNP"},{"id":"T3771","span":{"begin":69,"end":82},"obj":"NNP"},{"id":"T3772","span":{"begin":82,"end":83},"obj":"-COMMA-"},{"id":"T3773","span":{"begin":84,"end":89},"obj":"NNP"},{"id":"T3774","span":{"begin":90,"end":94},"obj":"NNP"},{"id":"T3775","span":{"begin":94,"end":95},"obj":"-COMMA-"},{"id":"T3776","span":{"begin":96,"end":98},"obj":"NN"},{"id":"T3777","span":{"begin":98,"end":99},"obj":"-RRB-"},{"id":"T3778","span":{"begin":100,"end":103},"obj":"CC"},{"id":"T3779","span":{"begin":104,"end":109},"obj":"NN"},{"id":"T3780","span":{"begin":110,"end":122},"obj":"JJ"},{"id":"T3781","span":{"begin":123,"end":124},"obj":"-LRB-"},{"id":"T3782","span":{"begin":124,"end":129},"obj":"NN"},{"id":"T3783","span":{"begin":129,"end":130},"obj":"-RRB-"},{"id":"T3784","span":{"begin":131,"end":132},"obj":"-LRB-"},{"id":"T3785","span":{"begin":132,"end":137},"obj":"NN"},{"id":"T3786","span":{"begin":137,"end":138},"obj":"-RRB-"}],"relations":[{"id":"R3061","pred":"arg1Of","subj":"T3761","obj":"T3759"},{"id":"R3062","pred":"arg1Of","subj":"T3761","obj":"T3760"},{"id":"R3063","pred":"arg1Of","subj":"T3761","obj":"T3762"},{"id":"R3064","pred":"arg1Of","subj":"T3764","obj":"T3763"},{"id":"R3065","pred":"arg1Of","subj":"T3764","obj":"T3765"},{"id":"R3066","pred":"arg1Of","subj":"T3764","obj":"T3768"},{"id":"R3067","pred":"arg1Of","subj":"T3764","obj":"T3778"},{"id":"R3068","pred":"arg2Of","subj":"T3766","obj":"T3765"},{"id":"R3069","pred":"arg3Of","subj":"T3767","obj":"T3765"},{"id":"R3070","pred":"arg2Of","subj":"T3771","obj":"T3768"},{"id":"R3071","pred":"arg1Of","subj":"T3771","obj":"T3769"},{"id":"R3072","pred":"arg1Of","subj":"T3771","obj":"T3770"},{"id":"R3073","pred":"arg1Of","subj":"T3771","obj":"T3772"},{"id":"R3074","pred":"arg2Of","subj":"T3774","obj":"T3772"},{"id":"R3075","pred":"arg1Of","subj":"T3774","obj":"T3773"},{"id":"R3076","pred":"arg1Of","subj":"T3774","obj":"T3775"},{"id":"R3077","pred":"arg2Of","subj":"T3776","obj":"T3775"},{"id":"R3078","pred":"arg3Of","subj":"T3777","obj":"T3768"},{"id":"R3079","pred":"arg2Of","subj":"T3778","obj":"T3762"},{"id":"R3080","pred":"arg1Of","subj":"T3778","obj":"T3784"},{"id":"R3081","pred":"arg2Of","subj":"T3782","obj":"T3778"},{"id":"R3082","pred":"arg1Of","subj":"T3782","obj":"T3779"},{"id":"R3083","pred":"arg1Of","subj":"T3782","obj":"T3780"},{"id":"R3084","pred":"arg2Of","subj":"T3782","obj":"T3781"},{"id":"R3085","pred":"arg3Of","subj":"T3783","obj":"T3781"},{"id":"R3086","pred":"arg2Of","subj":"T3785","obj":"T3784"},{"id":"R3087","pred":"arg3Of","subj":"T3786","obj":"T3784"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"The primary antibodies were goat anti-IRF-4/ICSAT (M-17) (Santa Cruz Biotechnology, Santa Cruz, CA) and mouse anti-β-actin (AC-74) (Sigma)."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T4132","span":{"begin":0,"end":3},"obj":"DT"},{"id":"T4133","span":{"begin":4,"end":11},"obj":"JJ"},{"id":"T4134","span":{"begin":12,"end":22},"obj":"NNS"},{"id":"T4135","span":{"begin":23,"end":27},"obj":"VBD"},{"id":"T4136","span":{"begin":28,"end":32},"obj":"JJ"},{"id":"T4137","span":{"begin":33,"end":43},"obj":"JJ"},{"id":"T4138","span":{"begin":43,"end":44},"obj":"NN"},{"id":"T4139","span":{"begin":44,"end":49},"obj":"NNP"},{"id":"T4140","span":{"begin":50,"end":51},"obj":"-LRB-"},{"id":"T4141","span":{"begin":51,"end":55},"obj":"NNP"},{"id":"T4142","span":{"begin":55,"end":56},"obj":"-RRB-"},{"id":"T4143","span":{"begin":57,"end":58},"obj":"-LRB-"},{"id":"T4144","span":{"begin":58,"end":63},"obj":"NNP"},{"id":"T4145","span":{"begin":64,"end":68},"obj":"NNP"},{"id":"T4146","span":{"begin":69,"end":82},"obj":"NNP"},{"id":"T4147","span":{"begin":82,"end":83},"obj":","},{"id":"T4148","span":{"begin":84,"end":89},"obj":"NNP"},{"id":"T4149","span":{"begin":90,"end":94},"obj":"NNP"},{"id":"T4150","span":{"begin":94,"end":95},"obj":","},{"id":"T4151","span":{"begin":96,"end":98},"obj":"NNP"},{"id":"T4152","span":{"begin":98,"end":99},"obj":"-RRB-"},{"id":"T4153","span":{"begin":100,"end":103},"obj":"CC"},{"id":"T4154","span":{"begin":104,"end":109},"obj":"NN"},{"id":"T4155","span":{"begin":110,"end":122},"obj":"NN"},{"id":"T4156","span":{"begin":123,"end":124},"obj":"-LRB-"},{"id":"T4157","span":{"begin":124,"end":129},"obj":"NN"},{"id":"T4158","span":{"begin":129,"end":130},"obj":"-RRB-"},{"id":"T4159","span":{"begin":131,"end":132},"obj":"-LRB-"},{"id":"T4160","span":{"begin":132,"end":137},"obj":"NNP"},{"id":"T4161","span":{"begin":137,"end":138},"obj":"-RRB-"},{"id":"T4162","span":{"begin":138,"end":139},"obj":"."}],"relations":[{"id":"R3418","pred":"det","subj":"T4132","obj":"T4134"},{"id":"R3419","pred":"amod","subj":"T4133","obj":"T4134"},{"id":"R3420","pred":"nsubj","subj":"T4134","obj":"T4135"},{"id":"R3421","pred":"ROOT","subj":"T4135","obj":"T4135"},{"id":"R3422","pred":"amod","subj":"T4136","obj":"T4139"},{"id":"R3423","pred":"amod","subj":"T4137","obj":"T4139"},{"id":"R3424","pred":"compound","subj":"T4138","obj":"T4139"},{"id":"R3425","pred":"attr","subj":"T4139","obj":"T4135"},{"id":"R3426","pred":"punct","subj":"T4140","obj":"T4139"},{"id":"R3427","pred":"appos","subj":"T4141","obj":"T4139"},{"id":"R3428","pred":"punct","subj":"T4142","obj":"T4139"},{"id":"R3429","pred":"punct","subj":"T4143","obj":"T4146"},{"id":"R3430","pred":"compound","subj":"T4144","obj":"T4145"},{"id":"R3431","pred":"compound","subj":"T4145","obj":"T4146"},{"id":"R3432","pred":"conj","subj":"T4146","obj":"T4139"},{"id":"R3433","pred":"punct","subj":"T4147","obj":"T4146"},{"id":"R3434","pred":"compound","subj":"T4148","obj":"T4149"},{"id":"R3435","pred":"conj","subj":"T4149","obj":"T4146"},{"id":"R3436","pred":"punct","subj":"T4150","obj":"T4149"},{"id":"R3437","pred":"conj","subj":"T4151","obj":"T4149"},{"id":"R3438","pred":"punct","subj":"T4152","obj":"T4146"},{"id":"R3439","pred":"cc","subj":"T4153","obj":"T4146"},{"id":"R3440","pred":"compound","subj":"T4154","obj":"T4155"},{"id":"R3441","pred":"conj","subj":"T4155","obj":"T4139"},{"id":"R3442","pred":"punct","subj":"T4156","obj":"T4157"},{"id":"R3443","pred":"appos","subj":"T4157","obj":"T4155"},{"id":"R3444","pred":"punct","subj":"T4158","obj":"T4155"},{"id":"R3445","pred":"punct","subj":"T4159","obj":"T4160"},{"id":"R3446","pred":"appos","subj":"T4160","obj":"T4139"},{"id":"R3447","pred":"punct","subj":"T4161","obj":"T4139"},{"id":"R3448","pred":"punct","subj":"T4162","obj":"T4135"}],"text":"The primary antibodies were goat anti-IRF-4/ICSAT (M-17) (Santa Cruz Biotechnology, Santa Cruz, CA) and mouse anti-β-actin (AC-74) (Sigma)."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T3423","span":{"begin":96,"end":98},"obj":"http://purl.obolibrary.org/obo/GO_0033968"}],"text":"The primary antibodies were goat anti-IRF-4/ICSAT (M-17) (Santa Cruz Biotechnology, Santa Cruz, CA) and mouse anti-β-actin (AC-74) (Sigma)."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T4178","span":{"begin":12,"end":22},"obj":"http://purl.obolibrary.org/obo/GO_0003823"},{"id":"T4179","span":{"begin":96,"end":98},"obj":"http://purl.obolibrary.org/obo/GO_0033968"}],"text":"The primary antibodies were goat anti-IRF-4/ICSAT (M-17) (Santa Cruz Biotechnology, Santa Cruz, CA) and mouse anti-β-actin (AC-74) (Sigma)."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T3438","span":{"begin":38,"end":43},"obj":"Protein"},{"id":"T3439","span":{"begin":44,"end":49},"obj":"Protein"},{"id":"T3440","span":{"begin":51,"end":55},"obj":"Protein"},{"id":"T3441","span":{"begin":115,"end":122},"obj":"Protein"}],"relations":[{"id":"R2739","pred":"equivalentTo","subj":"T3439","obj":"T3438"},{"id":"R2740","pred":"equivalentTo","subj":"T3440","obj":"T3438"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"The primary antibodies were goat anti-IRF-4/ICSAT (M-17) (Santa Cruz Biotechnology, Santa Cruz, CA) and mouse anti-β-actin (AC-74) (Sigma)."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T3799","span":{"begin":38,"end":43},"obj":"Q15306"},{"id":"T3800","span":{"begin":44,"end":49},"obj":"Q99419"},{"id":"T3801","span":{"begin":115,"end":122},"obj":"P60709"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"The primary antibodies were goat anti-IRF-4/ICSAT (M-17) (Santa Cruz Biotechnology, Santa Cruz, CA) and mouse anti-β-actin (AC-74) (Sigma)."}

    test2

    {"project":"test2","denotations":[{"id":"T3404","span":{"begin":38,"end":43},"obj":"Protein"},{"id":"T3405","span":{"begin":44,"end":49},"obj":"Protein"},{"id":"T3406","span":{"begin":51,"end":55},"obj":"Protein"},{"id":"T3407","span":{"begin":115,"end":122},"obj":"Protein"}],"relations":[{"id":"R2734","pred":"equivalentTo","subj":"T3405","obj":"T3404"},{"id":"R2735","pred":"equivalentTo","subj":"T3406","obj":"T3404"}],"text":"The primary antibodies were goat anti-IRF-4/ICSAT (M-17) (Santa Cruz Biotechnology, Santa Cruz, CA) and mouse anti-β-actin (AC-74) (Sigma)."}