> top > docs > PMC:1310901 > spans > 747-1033 > annotations

PMC:1310901 / 747-1033 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T879 4-14 Gene_expression denotes expression
T880 122-129 Regulation denotes altered
T881 130-135 Protein denotes IRF-4
T882 136-146 Gene_expression denotes expression
T883 175-180 Protein denotes IRF-4
T884 236-245 Regulation denotes influence
T885 246-251 Protein denotes IRF-4
T886 252-265 Transcription denotes transcription
R636 T881 T882 themeOf IRF-4,expression
R637 T882 T880 themeOf expression,altered
R638 T885 T886 themeOf IRF-4,transcription
R639 T886 T884 themeOf transcription,influence

events-check-again

Id Subject Object Predicate Lexical cue
T815 4-14 Gene_expression denotes expression
T816 122-129 Regulation denotes altered
T817 130-135 Protein denotes IRF-4
T818 136-146 Gene_expression denotes expression
T819 175-180 Protein denotes IRF-4
T820 236-245 Regulation denotes influence
T821 246-251 Protein denotes IRF-4
T822 252-265 Transcription denotes transcription
R603 T817 T818 themeOf IRF-4,expression
R604 T818 T816 themeOf expression,altered
R605 T821 T822 themeOf IRF-4,transcription
R606 T822 T820 themeOf transcription,influence

GO-CC

Id Subject Object Predicate Lexical cue
T699 27-32 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T700 164-169 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T109 34-266 Sentence denotes Whereas promoter mutations or structural rearrangements could be excluded as a cause of altered IRF-4 expression in hematopoietic cells, the IRF-4 promoter methylation status was found to significantly influence IRF-4 transcription.
T6 34-266 Sentence denotes Whereas promoter mutations or structural rearrangements could be excluded as a cause of altered IRF-4 expression in hematopoietic cells, the IRF-4 promoter methylation status was found to significantly influence IRF-4 transcription.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T245 4-14 NN denotes expression
T246 15-17 IN denotes in
T247 18-26 NN denotes leukemia
T248 27-32 NN denotes cells
T249 34-41 IN denotes Whereas
T250 42-50 NN denotes promoter
T251 51-60 NN denotes mutations
T252 61-63 CC denotes or
T253 64-74 JJ denotes structural
T254 75-89 NN denotes rearrangements
T255 90-95 MD denotes could
T256 96-98 VB denotes be
T257 99-107 VB denotes excluded
T258 108-110 IN denotes as
T259 111-112 DT denotes a
T260 113-118 NN denotes cause
T261 119-121 IN denotes of
T262 122-129 VB denotes altered
T263 130-135 NN denotes IRF-4
T264 136-146 NN denotes expression
T265 147-149 IN denotes in
T266 150-163 JJ denotes hematopoietic
T267 164-169 NN denotes cells
T268 169-170 -COMMA- denotes ,
T269 171-174 DT denotes the
T270 175-180 NN denotes IRF-4
T271 181-189 NN denotes promoter
T272 190-201 NN denotes methylation
T273 202-208 NN denotes status
T274 209-212 VB denotes was
T275 213-218 VB denotes found
T276 219-221 TO denotes to
T277 222-235 RB denotes significantly
T278 236-245 VB denotes influence
T279 246-251 NN denotes IRF-4
T280 252-265 NN denotes transcription
T281 267-272 RB denotes First
T282 272-273 -COMMA- denotes ,
T283 274-283 NN denotes treatment
T284 284-286 IN denotes of
R177 T260 T261 arg1Of cause,of
R178 T264 T261 arg2Of expression,of
R179 T264 T262 arg2Of expression,altered
R180 T264 T263 arg1Of expression,IRF-4
R181 T264 T265 arg1Of expression,in
R182 T267 T265 arg2Of cells,in
R183 T267 T266 arg1Of cells,hematopoietic
R184 T273 T269 arg1Of status,the
R185 T273 T270 arg1Of status,IRF-4
R186 T273 T271 arg1Of status,promoter
R187 T273 T272 arg1Of status,methylation
R188 T273 T274 arg1Of status,was
R161 T245 T246 arg1Of expression,in
R162 T248 T246 arg2Of cells,in
R163 T248 T247 arg1Of cells,leukemia
R164 T251 T250 arg1Of mutations,promoter
R165 T251 T252 arg1Of mutations,or
R166 T252 T255 arg1Of or,could
R167 T252 T256 arg1Of or,be
R168 T252 T257 arg2Of or,excluded
R169 T254 T252 arg2Of rearrangements,or
R170 T254 T253 arg1Of rearrangements,structural
R171 T257 T249 arg2Of excluded,Whereas
R172 T257 T255 arg2Of excluded,could
R173 T257 T256 arg2Of excluded,be
R174 T257 T258 arg1Of excluded,as
R175 T260 T258 arg2Of cause,as
R176 T260 T259 arg1Of cause,a
R189 T273 T275 arg2Of status,found
R190 T273 T278 arg1Of status,influence
R191 T275 T249 arg1Of found,Whereas
R192 T275 T268 arg1Of found,","
R193 T275 T274 arg2Of found,was
R194 T278 T275 arg3Of influence,found
R195 T278 T276 arg1Of influence,to
R196 T278 T277 arg1Of influence,significantly
R197 T280 T278 arg2Of transcription,influence
R198 T280 T279 arg1Of transcription,IRF-4
R199 T283 T284 arg1Of treatment,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T538 4-14 NN denotes expression
T539 15-17 IN denotes in
T540 18-26 NN denotes leukemia
T541 27-32 NNS denotes cells
T542 32-33 . denotes .
T543 34-41 IN denotes Whereas
T544 42-50 NN denotes promoter
T545 51-60 NNS denotes mutations
T546 61-63 CC denotes or
T547 64-74 JJ denotes structural
T548 75-89 NNS denotes rearrangements
T549 90-95 MD denotes could
T550 96-98 VB denotes be
T551 99-107 VBN denotes excluded
T552 108-110 IN denotes as
T553 111-112 DT denotes a
T554 113-118 NN denotes cause
T555 119-121 IN denotes of
T556 122-129 JJ denotes altered
T557 130-135 NN denotes IRF-4
T558 136-146 NN denotes expression
T559 147-149 IN denotes in
T560 150-163 JJ denotes hematopoietic
T561 164-169 NNS denotes cells
T562 169-170 , denotes ,
T563 171-174 DT denotes the
T564 175-180 NNP denotes IRF-4
T565 181-189 NN denotes promoter
T566 190-201 NN denotes methylation
T567 202-208 NN denotes status
T568 209-212 VBD denotes was
T569 213-218 VBN denotes found
T570 219-221 TO denotes to
T571 222-235 RB denotes significantly
T572 236-245 VB denotes influence
T573 246-251 JJ denotes IRF-4
T574 252-265 NN denotes transcription
T575 265-266 . denotes .
T576 267-272 RB denotes First
T577 272-273 , denotes ,
T578 274-283 NN denotes treatment
T579 284-286 IN denotes of
R445 T556 T558 amod altered,expression
R446 T557 T558 compound IRF-4,expression
R447 T558 T555 pobj expression,of
R448 T559 T558 prep in,expression
R449 T560 T561 amod hematopoietic,cells
R450 T561 T559 pobj cells,in
R451 T562 T569 punct ",",found
R452 T563 T567 det the,status
R453 T564 T567 compound IRF-4,status
R454 T565 T567 compound promoter,status
R429 T540 T541 compound leukemia,cells
R430 T541 T539 pobj cells,in
R432 T543 T551 mark Whereas,excluded
R433 T544 T545 compound promoter,mutations
R434 T545 T551 nsubjpass mutations,excluded
R435 T546 T545 cc or,mutations
R436 T547 T548 amod structural,rearrangements
R437 T548 T545 conj rearrangements,mutations
R438 T549 T551 aux could,excluded
R439 T550 T551 auxpass be,excluded
R440 T551 T569 advcl excluded,found
R441 T552 T551 prep as,excluded
R442 T553 T554 det a,cause
R443 T554 T552 pobj cause,as
R444 T555 T554 prep of,cause
R455 T566 T567 compound methylation,status
R456 T567 T569 nsubjpass status,found
R457 T568 T569 auxpass was,found
R458 T569 T569 ROOT found,found
R459 T570 T572 aux to,influence
R460 T571 T572 advmod significantly,influence
R461 T572 T569 xcomp influence,found
R462 T573 T574 compound IRF-4,transcription
R463 T574 T572 dobj transcription,influence
R464 T575 T569 punct .,found
R468 T579 T578 prep of,treatment

GO-BP

Id Subject Object Predicate Lexical cue
T120 252-265 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T124 190-201 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T849 4-14 Gene_expression denotes expression
T851 130-135 Protein denotes IRF-4
T852 175-189 Protein denotes IRF-4 promoter
T853 246-251 Protein denotes IRF-4
T854 136-146 Gene_expression denotes expression
T855 252-265 Transcription denotes transcription
T856 122-129 Regulation denotes altered
T857 236-245 Regulation denotes influence
R621 T851 T854 themeOf IRF-4,expression
R622 T853 T855 themeOf IRF-4,transcription
R623 T854 T856 themeOf expression,altered
R624 T855 T857 themeOf transcription,influence

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T82 4-14 Gene_expression denotes expression
T83 122-129 Regulation denotes altered
T84 130-135 Protein denotes IRF-4
T85 136-146 Gene_expression denotes expression
T86 175-180 Protein denotes IRF-4
T87 236-245 Regulation denotes influence
T88 246-251 Protein denotes IRF-4
T89 252-265 Transcription denotes transcription
R654 T84 T85 themeOf IRF-4,expression
R656 T88 T89 themeOf IRF-4,transcription
R657 T89 T87 themeOf transcription,influence
R655 T85 T83 themeOf expression,altered

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T403 130-135 Q15306 denotes IRF-4
T404 175-180 Q15306 denotes IRF-4
T405 246-251 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T46 4-14 Gene_expression denotes expression
T47 122-129 Regulation denotes altered true
T48 130-135 Protein denotes IRF-4
T49 136-146 Gene_expression denotes expression
T50 175-180 Protein denotes IRF-4 true
T51 236-245 Regulation denotes influence
T52 246-251 Protein denotes IRF-4
T53 252-265 Transcription denotes transcription
R25 T48 T49 themeOf IRF-4,expression
R26 T49 T47 themeOf expression,altered
R27 T52 T53 themeOf IRF-4,transcription
R28 T53 T51 themeOf transcription,influence