PMC:1310901 / 6735-6926 JSONTXT

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    bionlp-st-ge-2016-reference-eval

    {"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T4319","span":{"begin":116,"end":131},"obj":"Transcription"},{"id":"T4330","span":{"begin":110,"end":115},"obj":"Protein"}],"relations":[{"id":"R3510","pred":"themeOf","subj":"T4330","obj":"T4319"}],"text":"pplied Bio-systems, Foster City, USA) as recommended by the manufacturer.\n\nExpression analysis\nTo analyze the IRF-4 transcriptional level, RNA was extracted from cells using the commercial RN"}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T4269","span":{"begin":110,"end":115},"obj":"Protein"},{"id":"T4270","span":{"begin":116,"end":131},"obj":"Transcription"}],"relations":[{"id":"R3488","pred":"themeOf","subj":"T4269","obj":"T4270"}],"text":"pplied Bio-systems, Foster City, USA) as recommended by the manufacturer.\n\nExpression analysis\nTo analyze the IRF-4 transcriptional level, RNA was extracted from cells using the commercial RN"}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T4180","span":{"begin":162,"end":167},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"pplied Bio-systems, Foster City, USA) as recommended by the manufacturer.\n\nExpression analysis\nTo analyze the IRF-4 transcriptional level, RNA was extracted from cells using the commercial RN"}

    sentences

    {"project":"sentences","denotations":[{"id":"T3408","span":{"begin":75,"end":94},"obj":"Sentence"},{"id":"T51","span":{"begin":75,"end":94},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"pplied Bio-systems, Foster City, USA) as recommended by the manufacturer.\n\nExpression analysis\nTo analyze the IRF-4 transcriptional level, RNA was extracted from cells using the commercial RN"}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T3178","span":{"begin":7,"end":18},"obj":"NNP"},{"id":"T3179","span":{"begin":18,"end":19},"obj":"-COMMA-"},{"id":"T3180","span":{"begin":20,"end":26},"obj":"NNP"},{"id":"T3181","span":{"begin":27,"end":31},"obj":"NNP"},{"id":"T3182","span":{"begin":31,"end":32},"obj":"-COMMA-"},{"id":"T3183","span":{"begin":33,"end":36},"obj":"NNP"},{"id":"T3184","span":{"begin":36,"end":37},"obj":"-RRB-"},{"id":"T3185","span":{"begin":38,"end":40},"obj":"IN"},{"id":"T3186","span":{"begin":41,"end":52},"obj":"VB"},{"id":"T3187","span":{"begin":53,"end":55},"obj":"IN"},{"id":"T3188","span":{"begin":56,"end":59},"obj":"DT"},{"id":"T3189","span":{"begin":60,"end":72},"obj":"NN"},{"id":"T3450","span":{"begin":75,"end":85},"obj":"NN"},{"id":"T3451","span":{"begin":86,"end":94},"obj":"NN"},{"id":"T3452","span":{"begin":95,"end":97},"obj":"TO"},{"id":"T3453","span":{"begin":98,"end":105},"obj":"VB"},{"id":"T3454","span":{"begin":106,"end":109},"obj":"DT"},{"id":"T3455","span":{"begin":110,"end":115},"obj":"NN"},{"id":"T3456","span":{"begin":116,"end":131},"obj":"JJ"},{"id":"T3457","span":{"begin":132,"end":137},"obj":"NN"},{"id":"T3458","span":{"begin":137,"end":138},"obj":"-COMMA-"},{"id":"T3459","span":{"begin":139,"end":142},"obj":"NN"},{"id":"T3460","span":{"begin":143,"end":146},"obj":"VB"},{"id":"T3461","span":{"begin":147,"end":156},"obj":"VB"},{"id":"T3462","span":{"begin":157,"end":161},"obj":"IN"},{"id":"T3463","span":{"begin":162,"end":167},"obj":"NN"},{"id":"T3464","span":{"begin":168,"end":173},"obj":"VB"},{"id":"T3465","span":{"begin":174,"end":177},"obj":"DT"},{"id":"T3466","span":{"begin":178,"end":188},"obj":"JJ"}],"relations":[{"id":"R2552","pred":"arg1Of","subj":"T3179","obj":"T3182"},{"id":"R2553","pred":"arg1Of","subj":"T3179","obj":"T3183"},{"id":"R2554","pred":"arg2Of","subj":"T3181","obj":"T3179"},{"id":"R2555","pred":"arg1Of","subj":"T3181","obj":"T3180"},{"id":"R2557","pred":"arg2Of","subj":"T3186","obj":"T3185"},{"id":"R2558","pred":"arg1Of","subj":"T3189","obj":"T3186"},{"id":"R2559","pred":"arg2Of","subj":"T3189","obj":"T3187"},{"id":"R2560","pred":"arg1Of","subj":"T3189","obj":"T3188"},{"id":"R2749","pred":"arg1Of","subj":"T3451","obj":"T3450"},{"id":"R2750","pred":"arg1Of","subj":"T3453","obj":"T3452"},{"id":"R2751","pred":"arg2Of","subj":"T3457","obj":"T3453"},{"id":"R2752","pred":"arg1Of","subj":"T3457","obj":"T3454"},{"id":"R2753","pred":"arg1Of","subj":"T3457","obj":"T3455"},{"id":"R2754","pred":"arg1Of","subj":"T3457","obj":"T3456"},{"id":"R2755","pred":"arg1Of","subj":"T3459","obj":"T3453"},{"id":"R2756","pred":"arg1Of","subj":"T3459","obj":"T3460"},{"id":"R2757","pred":"arg2Of","subj":"T3459","obj":"T3461"},{"id":"R2758","pred":"modOf","subj":"T3461","obj":"T3452"},{"id":"R2759","pred":"arg1Of","subj":"T3461","obj":"T3458"},{"id":"R2760","pred":"arg2Of","subj":"T3461","obj":"T3460"},{"id":"R2761","pred":"arg1Of","subj":"T3461","obj":"T3462"},{"id":"R2762","pred":"arg2Of","subj":"T3463","obj":"T3462"},{"id":"R2763","pred":"arg1Of","subj":"T3463","obj":"T3464"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"pplied Bio-systems, Foster City, USA) as recommended by the manufacturer.\n\nExpression analysis\nTo analyze the IRF-4 transcriptional level, RNA was extracted from cells using the commercial RN"}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T3327","span":{"begin":7,"end":18},"obj":"NNPS"},{"id":"T3328","span":{"begin":18,"end":19},"obj":","},{"id":"T3329","span":{"begin":20,"end":26},"obj":"NNP"},{"id":"T3330","span":{"begin":27,"end":31},"obj":"NNP"},{"id":"T3331","span":{"begin":31,"end":32},"obj":","},{"id":"T3332","span":{"begin":33,"end":36},"obj":"NNP"},{"id":"T3333","span":{"begin":36,"end":37},"obj":"-RRB-"},{"id":"T3334","span":{"begin":38,"end":40},"obj":"IN"},{"id":"T3335","span":{"begin":41,"end":52},"obj":"VBN"},{"id":"T3336","span":{"begin":53,"end":55},"obj":"IN"},{"id":"T3337","span":{"begin":56,"end":59},"obj":"DT"},{"id":"T3338","span":{"begin":60,"end":72},"obj":"NN"},{"id":"T3339","span":{"begin":72,"end":73},"obj":"."},{"id":"T3802","span":{"begin":75,"end":85},"obj":"NN"},{"id":"T3803","span":{"begin":86,"end":94},"obj":"NN"},{"id":"T3804","span":{"begin":95,"end":97},"obj":"TO"},{"id":"T3805","span":{"begin":98,"end":105},"obj":"VB"},{"id":"T3806","span":{"begin":106,"end":109},"obj":"DT"},{"id":"T3807","span":{"begin":110,"end":115},"obj":"NN"},{"id":"T3808","span":{"begin":116,"end":131},"obj":"JJ"},{"id":"T3809","span":{"begin":132,"end":137},"obj":"NN"},{"id":"T3810","span":{"begin":137,"end":138},"obj":","},{"id":"T3811","span":{"begin":139,"end":142},"obj":"NNP"},{"id":"T3812","span":{"begin":143,"end":146},"obj":"VBD"},{"id":"T3813","span":{"begin":147,"end":156},"obj":"VBN"},{"id":"T3814","span":{"begin":157,"end":161},"obj":"IN"},{"id":"T3815","span":{"begin":162,"end":167},"obj":"NNS"},{"id":"T3816","span":{"begin":168,"end":173},"obj":"VBG"},{"id":"T3817","span":{"begin":174,"end":177},"obj":"DT"},{"id":"T3818","span":{"begin":178,"end":188},"obj":"JJ"}],"relations":[{"id":"R2698","pred":"compound","subj":"T3329","obj":"T3330"},{"id":"R2700","pred":"punct","subj":"T3331","obj":"T3330"},{"id":"R2701","pred":"npadvmod","subj":"T3332","obj":"T3330"},{"id":"R2703","pred":"mark","subj":"T3334","obj":"T3335"},{"id":"R2705","pred":"agent","subj":"T3336","obj":"T3335"},{"id":"R2706","pred":"det","subj":"T3337","obj":"T3338"},{"id":"R2707","pred":"pobj","subj":"T3338","obj":"T3336"},{"id":"R3088","pred":"compound","subj":"T3802","obj":"T3803"},{"id":"R3089","pred":"nsubjpass","subj":"T3803","obj":"T3813"},{"id":"R3090","pred":"aux","subj":"T3804","obj":"T3805"},{"id":"R3091","pred":"advcl","subj":"T3805","obj":"T3813"},{"id":"R3092","pred":"det","subj":"T3806","obj":"T3809"},{"id":"R3093","pred":"nmod","subj":"T3807","obj":"T3809"},{"id":"R3094","pred":"amod","subj":"T3808","obj":"T3809"},{"id":"R3095","pred":"dobj","subj":"T3809","obj":"T3805"},{"id":"R3096","pred":"punct","subj":"T3810","obj":"T3813"},{"id":"R3097","pred":"nsubjpass","subj":"T3811","obj":"T3813"},{"id":"R3098","pred":"auxpass","subj":"T3812","obj":"T3813"},{"id":"R3099","pred":"ROOT","subj":"T3813","obj":"T3813"},{"id":"R3100","pred":"prep","subj":"T3814","obj":"T3813"},{"id":"R3101","pred":"pobj","subj":"T3815","obj":"T3814"},{"id":"R3102","pred":"advcl","subj":"T3816","obj":"T3813"}],"text":"pplied Bio-systems, Foster City, USA) as recommended by the manufacturer.\n\nExpression analysis\nTo analyze the IRF-4 transcriptional level, RNA was extracted from cells using the commercial RN"}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T3421","span":{"begin":116,"end":131},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"pplied Bio-systems, Foster City, USA) as recommended by the manufacturer.\n\nExpression analysis\nTo analyze the IRF-4 transcriptional level, RNA was extracted from cells using the commercial RN"}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T4295","span":{"begin":110,"end":115},"obj":"Protein"}],"text":"pplied Bio-systems, Foster City, USA) as recommended by the manufacturer.\n\nExpression analysis\nTo analyze the IRF-4 transcriptional level, RNA was extracted from cells using the commercial RN"}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T3424","span":{"begin":116,"end":131},"obj":"Transcription"},{"id":"T3435","span":{"begin":110,"end":115},"obj":"Protein"}],"relations":[{"id":"R2736","pred":"themeOf","subj":"T3435","obj":"T3424"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"pplied Bio-systems, Foster City, USA) as recommended by the manufacturer.\n\nExpression analysis\nTo analyze the IRF-4 transcriptional level, RNA was extracted from cells using the commercial RN"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T3787","span":{"begin":110,"end":115},"obj":"Q15306"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"pplied Bio-systems, Foster City, USA) as recommended by the manufacturer.\n\nExpression analysis\nTo analyze the IRF-4 transcriptional level, RNA was extracted from cells using the commercial RN"}

    test2

    {"project":"test2","denotations":[{"id":"T3389","span":{"begin":110,"end":115},"obj":"Protein"},{"id":"T3390","span":{"begin":116,"end":131},"obj":"Transcription"}],"relations":[{"id":"R2723","pred":"themeOf","subj":"T3389","obj":"T3390"}],"text":"pplied Bio-systems, Foster City, USA) as recommended by the manufacturer.\n\nExpression analysis\nTo analyze the IRF-4 transcriptional level, RNA was extracted from cells using the commercial RN"}