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PMC:1310901 / 4981-5160 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T2659 103-111 Gene_expression denotes positive
T2660 117-125 Gene_expression denotes negative
T2692 23-28 Protein denotes IRF-4
T2693 97-102 Protein denotes IRF-4
R2111 T2693 T2659 themeOf IRF-4,positive
R2112 T2693 T2660 themeOf IRF-4,negative

events-check-again

Id Subject Object Predicate Lexical cue Negation
T2561 23-28 Protein denotes IRF-4
T2562 97-102 Protein denotes IRF-4
T2563 103-111 Gene_expression denotes positive
T2564 117-125 Gene_expression denotes negative true
R2047 T2562 T2563 themeOf IRF-4,positive
R2048 T2562 T2564 themeOf IRF-4,negative

GO-CC

Id Subject Object Predicate Lexical cue
T2363 0-5 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T2364 140-145 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T2842 171-175 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell

sentences

Id Subject Object Predicate Lexical cue
T1075 7-146 Sentence denotes We analyzed the IRF-4 promoter region for genetic aberrations and methylational status in IRF-4-positive and -negative hematopoietic cells.
T33 7-146 Sentence denotes We analyzed the IRF-4 promoter region for genetic aberrations and methylational status in IRF-4-positive and -negative hematopoietic cells.
T34 148-169 Sentence denotes MATERIALS AND METHODS

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1654 0-5 NN denotes cells
T1655 7-9 PRP denotes We
T1656 10-18 VB denotes analyzed
T1657 19-22 DT denotes the
T1658 23-28 NN denotes IRF-4
T1659 29-37 NN denotes promoter
T1660 38-44 NN denotes region
T1661 45-48 IN denotes for
T1662 49-56 JJ denotes genetic
T1663 57-68 NN denotes aberrations
T1664 69-72 CC denotes and
T1665 73-86 JJ denotes methylational
T1666 87-93 NN denotes status
T1667 94-96 IN denotes in
T1668 97-111 JJ denotes IRF-4-positive
T1669 112-115 CC denotes and
T1670 116-125 JJ denotes -negative
T1671 126-139 JJ denotes hematopoietic
T1672 140-145 NN denotes cells
T2710 171-175 NN denotes Cell
R1330 T1655 T1656 arg1Of We,analyzed
R1331 T1656 T1661 arg1Of analyzed,for
R1332 T1660 T1656 arg2Of region,analyzed
R1333 T1660 T1657 arg1Of region,the
R1334 T1660 T1658 arg1Of region,IRF-4
R1335 T1660 T1659 arg1Of region,promoter
R1336 T1663 T1662 arg1Of aberrations,genetic
R1337 T1663 T1664 arg1Of aberrations,and
R1338 T1664 T1661 arg2Of and,for
R1339 T1664 T1667 arg1Of and,in
R1340 T1666 T1664 arg2Of status,and
R1341 T1666 T1665 arg1Of status,methylational
R1342 T1668 T1669 arg1Of IRF-4-positive,and
R1343 T1670 T1669 arg2Of -negative,and
R1344 T1672 T1667 arg2Of cells,in
R1345 T1672 T1668 arg1Of cells,IRF-4-positive
R1346 T1672 T1670 arg1Of cells,-negative
R1347 T1672 T1671 arg1Of cells,hematopoietic

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2305 0-5 NNS denotes cells
T2306 5-6 . denotes .
T2307 7-9 PRP denotes We
T2308 10-18 VBD denotes analyzed
T2309 19-22 DT denotes the
T2310 23-28 NN denotes IRF-4
T2311 29-37 NN denotes promoter
T2312 38-44 NN denotes region
T2313 45-48 IN denotes for
T2314 49-56 JJ denotes genetic
T2315 57-68 NNS denotes aberrations
T2316 69-72 CC denotes and
T2317 73-86 JJ denotes methylational
T2318 87-93 NN denotes status
T2319 94-96 IN denotes in
T2320 97-111 JJ denotes IRF-4-positive
T2321 112-115 CC denotes and
T2322 116-117 : denotes -
T2323 117-125 JJ denotes negative
T2324 126-139 JJ denotes hematopoietic
T2325 140-145 NNS denotes cells
T2326 145-146 . denotes .
T2774 171-175 NN denotes Cell
R1899 T2307 T2308 nsubj We,analyzed
R1901 T2308 T2308 ROOT analyzed,analyzed
R1902 T2309 T2312 det the,region
R1904 T2310 T2312 amod IRF-4,region
R1905 T2311 T2312 compound promoter,region
R1906 T2312 T2308 dobj region,analyzed
R1908 T2313 T2308 prep for,analyzed
R1909 T2314 T2315 amod genetic,aberrations
R1910 T2315 T2313 pobj aberrations,for
R1911 T2316 T2315 cc and,aberrations
R1912 T2317 T2318 amod methylational,status
R1913 T2318 T2315 conj status,aberrations
R1915 T2319 T2315 prep in,aberrations
R1916 T2320 T2319 pobj IRF-4-positive,in
R1917 T2321 T2308 cc and,analyzed
R1919 T2322 T2325 punct -,cells
R1920 T2323 T2325 amod negative,cells
R1921 T2324 T2325 amod hematopoietic,cells
R1923 T2325 T2308 conj cells,analyzed
R1925 T2326 T2308 punct .,analyzed

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2648 23-44 Protein denotes IRF-4 promoter region
T2649 116-125 Gene_expression denotes -negative
R2127 T2648 T2649 themeOf IRF-4 promoter region,-negative

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T1050 23-28 Protein denotes IRF-4
T1051 97-102 Protein denotes IRF-4
T1052 103-111 Gene_expression denotes positive
T1053 117-125 Gene_expression denotes negative true
R770 T1051 T1052 themeOf IRF-4,positive
R771 T1051 T1053 themeOf IRF-4,negative

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1723 23-28 Q15306 denotes IRF-4
T1724 97-102 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue
T1000 23-28 Protein denotes IRF-4
T1001 97-102 Protein denotes IRF-4
T1002 103-111 Gene_expression denotes positive
T1003 117-125 Gene_expression denotes negative
R745 T1001 T1003 themeOf IRF-4,negative
R746 T1001 T1002 themeOf IRF-4,positive