PMC:1310901 / 4093-4289 JSONTXT

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    bionlp-st-ge-2016-reference-eval

    {"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T2653","span":{"begin":179,"end":187},"obj":"Regulation"},{"id":"T2655","span":{"begin":179,"end":187},"obj":"Regulation"},{"id":"T2678","span":{"begin":74,"end":78},"obj":"Protein"},{"id":"T2679","span":{"begin":80,"end":84},"obj":"Protein"},{"id":"T2681","span":{"begin":86,"end":92},"obj":"Protein"},{"id":"T2682","span":{"begin":94,"end":102},"obj":"Protein"},{"id":"T2683","span":{"begin":104,"end":112},"obj":"Protein"},{"id":"T2684","span":{"begin":114,"end":119},"obj":"Protein"},{"id":"T2685","span":{"begin":121,"end":126},"obj":"Protein"},{"id":"T2686","span":{"begin":131,"end":137},"obj":"Protein"}],"text":" involved in tumorigenesis (15–17). Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19). In CML, methylation is known to regulate expressi"}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T2543","span":{"begin":74,"end":78},"obj":"Protein"},{"id":"T2544","span":{"begin":80,"end":84},"obj":"Protein"},{"id":"T2545","span":{"begin":86,"end":92},"obj":"Protein"},{"id":"T2546","span":{"begin":94,"end":102},"obj":"Protein"},{"id":"T2547","span":{"begin":104,"end":112},"obj":"Protein"},{"id":"T2548","span":{"begin":114,"end":119},"obj":"Protein"},{"id":"T2549","span":{"begin":121,"end":126},"obj":"Protein"},{"id":"T2550","span":{"begin":131,"end":137},"obj":"Protein"},{"id":"T2551","span":{"begin":179,"end":187},"obj":"Regulation"},{"id":"T2552","span":{"begin":179,"end":187},"obj":"Regulation"}],"text":" involved in tumorigenesis (15–17). Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19). In CML, methylation is known to regulate expressi"}

    sentences

    {"project":"sentences","denotations":[{"id":"T1069","span":{"begin":36,"end":146},"obj":"Sentence"},{"id":"T27","span":{"begin":36,"end":146},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":" involved in tumorigenesis (15–17). Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19). In CML, methylation is known to regulate expressi"}

    2_test

    {"project":"2_test","denotations":[{"id":"16396836-9639410-76538175","span":{"begin":28,"end":30},"obj":"9639410"},{"id":"16396836-10729832-76538175","span":{"begin":28,"end":30},"obj":"10729832"},{"id":"16396836-11748635-76538175","span":{"begin":28,"end":30},"obj":"11748635"},{"id":"16396836-11748635-76538176","span":{"begin":139,"end":141},"obj":"11748635"},{"id":"16396836-9041182-76538176","span":{"begin":139,"end":141},"obj":"9041182"},{"id":"16396836-12154405-76538176","span":{"begin":139,"end":141},"obj":"12154405"}],"text":" involved in tumorigenesis (15–17). Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19). In CML, methylation is known to regulate expressi"}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T1500","span":{"begin":1,"end":9},"obj":"VB"},{"id":"T1501","span":{"begin":10,"end":12},"obj":"IN"},{"id":"T1502","span":{"begin":13,"end":26},"obj":"NN"},{"id":"T1503","span":{"begin":27,"end":28},"obj":"-LRB-"},{"id":"T1504","span":{"begin":28,"end":33},"obj":"CD"},{"id":"T1505","span":{"begin":33,"end":34},"obj":"-RRB-"},{"id":"T1506","span":{"begin":36,"end":44},"obj":"NN"},{"id":"T1507","span":{"begin":45,"end":48},"obj":"IN"},{"id":"T1508","span":{"begin":49,"end":53},"obj":"JJ"},{"id":"T1509","span":{"begin":54,"end":63},"obj":"JJ"},{"id":"T1510","span":{"begin":64,"end":69},"obj":"NN"},{"id":"T1511","span":{"begin":70,"end":73},"obj":"VB"},{"id":"T1512","span":{"begin":74,"end":78},"obj":"NNP"},{"id":"T1513","span":{"begin":78,"end":79},"obj":"-COMMA-"},{"id":"T1514","span":{"begin":80,"end":84},"obj":"NNP"},{"id":"T1515","span":{"begin":84,"end":85},"obj":"-COMMA-"},{"id":"T1516","span":{"begin":86,"end":92},"obj":"NN"},{"id":"T1517","span":{"begin":92,"end":93},"obj":"-COMMA-"},{"id":"T1518","span":{"begin":94,"end":102},"obj":"NN"},{"id":"T1519","span":{"begin":102,"end":103},"obj":"-COMMA-"},{"id":"T1520","span":{"begin":104,"end":112},"obj":"NN"},{"id":"T1521","span":{"begin":112,"end":113},"obj":"-COMMA-"},{"id":"T1522","span":{"begin":114,"end":119},"obj":"NN"},{"id":"T1523","span":{"begin":119,"end":120},"obj":"-COMMA-"},{"id":"T1524","span":{"begin":121,"end":126},"obj":"NN"},{"id":"T1525","span":{"begin":127,"end":130},"obj":"CC"},{"id":"T1526","span":{"begin":131,"end":137},"obj":"NN"},{"id":"T1527","span":{"begin":138,"end":139},"obj":"-LRB-"},{"id":"T1528","span":{"begin":139,"end":144},"obj":"CD"},{"id":"T1529","span":{"begin":144,"end":145},"obj":"-RRB-"},{"id":"T1530","span":{"begin":147,"end":149},"obj":"IN"},{"id":"T1531","span":{"begin":150,"end":153},"obj":"NN"},{"id":"T1532","span":{"begin":153,"end":154},"obj":"-COMMA-"},{"id":"T1533","span":{"begin":155,"end":166},"obj":"NN"},{"id":"T1534","span":{"begin":167,"end":169},"obj":"VB"},{"id":"T1535","span":{"begin":170,"end":175},"obj":"VB"},{"id":"T1536","span":{"begin":176,"end":178},"obj":"TO"},{"id":"T1537","span":{"begin":179,"end":187},"obj":"VB"}],"relations":[{"id":"R1168","pred":"arg1Of","subj":"T1500","obj":"T1501"},{"id":"R1169","pred":"arg2Of","subj":"T1502","obj":"T1501"},{"id":"R1170","pred":"arg1Of","subj":"T1502","obj":"T1503"},{"id":"R1171","pred":"arg2Of","subj":"T1504","obj":"T1503"},{"id":"R1172","pred":"arg3Of","subj":"T1505","obj":"T1503"},{"id":"R1173","pred":"arg1Of","subj":"T1506","obj":"T1507"},{"id":"R1174","pred":"arg1Of","subj":"T1506","obj":"T1511"},{"id":"R1175","pred":"arg1Of","subj":"T1509","obj":"T1508"},{"id":"R1176","pred":"arg2Of","subj":"T1510","obj":"T1507"},{"id":"R1177","pred":"arg1Of","subj":"T1510","obj":"T1509"},{"id":"R1178","pred":"arg1Of","subj":"T1512","obj":"T1513"},{"id":"R1179","pred":"arg1Of","subj":"T1513","obj":"T1515"},{"id":"R1180","pred":"arg2Of","subj":"T1514","obj":"T1513"},{"id":"R1181","pred":"arg1Of","subj":"T1515","obj":"T1517"},{"id":"R1182","pred":"arg2Of","subj":"T1516","obj":"T1515"},{"id":"R1183","pred":"arg1Of","subj":"T1517","obj":"T1519"},{"id":"R1184","pred":"arg2Of","subj":"T1518","obj":"T1517"},{"id":"R1185","pred":"arg1Of","subj":"T1519","obj":"T1521"},{"id":"R1186","pred":"arg2Of","subj":"T1520","obj":"T1519"},{"id":"R1187","pred":"arg1Of","subj":"T1521","obj":"T1523"},{"id":"R1188","pred":"arg2Of","subj":"T1522","obj":"T1521"},{"id":"R1189","pred":"arg1Of","subj":"T1523","obj":"T1525"},{"id":"R1190","pred":"arg2Of","subj":"T1524","obj":"T1523"},{"id":"R1191","pred":"arg2Of","subj":"T1525","obj":"T1511"},{"id":"R1192","pred":"arg2Of","subj":"T1526","obj":"T1525"},{"id":"R1193","pred":"arg1Of","subj":"T1526","obj":"T1527"},{"id":"R1194","pred":"arg2Of","subj":"T1528","obj":"T1527"},{"id":"R1195","pred":"arg3Of","subj":"T1529","obj":"T1527"},{"id":"R1196","pred":"arg2Of","subj":"T1531","obj":"T1530"},{"id":"R1197","pred":"arg1Of","subj":"T1533","obj":"T1534"},{"id":"R1198","pred":"arg2Of","subj":"T1533","obj":"T1535"},{"id":"R1199","pred":"arg1Of","subj":"T1533","obj":"T1537"},{"id":"R1200","pred":"arg2Of","subj":"T1535","obj":"T1534"},{"id":"R1202","pred":"arg3Of","subj":"T1537","obj":"T1535"},{"id":"R1203","pred":"arg1Of","subj":"T1537","obj":"T1536"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":" involved in tumorigenesis (15–17). Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19). In CML, methylation is known to regulate expressi"}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T2142","span":{"begin":1,"end":9},"obj":"VBN"},{"id":"T2143","span":{"begin":10,"end":12},"obj":"IN"},{"id":"T2144","span":{"begin":13,"end":26},"obj":"NN"},{"id":"T2145","span":{"begin":27,"end":28},"obj":"-LRB-"},{"id":"T2146","span":{"begin":28,"end":30},"obj":"CD"},{"id":"T2147","span":{"begin":31,"end":33},"obj":"CD"},{"id":"T2148","span":{"begin":33,"end":34},"obj":"-RRB-"},{"id":"T2149","span":{"begin":34,"end":35},"obj":"."},{"id":"T2150","span":{"begin":36,"end":44},"obj":"NNS"},{"id":"T2151","span":{"begin":45,"end":48},"obj":"IN"},{"id":"T2152","span":{"begin":49,"end":53},"obj":"JJ"},{"id":"T2153","span":{"begin":54,"end":63},"obj":"JJ"},{"id":"T2154","span":{"begin":64,"end":69},"obj":"NNS"},{"id":"T2155","span":{"begin":70,"end":73},"obj":"VBP"},{"id":"T2156","span":{"begin":74,"end":78},"obj":"NNP"},{"id":"T2157","span":{"begin":78,"end":79},"obj":","},{"id":"T2158","span":{"begin":80,"end":84},"obj":"NNP"},{"id":"T2159","span":{"begin":84,"end":85},"obj":","},{"id":"T2160","span":{"begin":86,"end":92},"obj":"NNP"},{"id":"T2161","span":{"begin":92,"end":93},"obj":","},{"id":"T2162","span":{"begin":94,"end":102},"obj":"NNP"},{"id":"T2163","span":{"begin":102,"end":103},"obj":","},{"id":"T2164","span":{"begin":104,"end":112},"obj":"NNP"},{"id":"T2165","span":{"begin":112,"end":113},"obj":","},{"id":"T2166","span":{"begin":114,"end":119},"obj":"NNP"},{"id":"T2167","span":{"begin":119,"end":120},"obj":","},{"id":"T2168","span":{"begin":121,"end":126},"obj":"NNP"},{"id":"T2169","span":{"begin":127,"end":130},"obj":"CC"},{"id":"T2170","span":{"begin":131,"end":137},"obj":"NNP"},{"id":"T2171","span":{"begin":138,"end":139},"obj":"-LRB-"},{"id":"T2172","span":{"begin":139,"end":141},"obj":"CD"},{"id":"T2173","span":{"begin":142,"end":144},"obj":"CD"},{"id":"T2174","span":{"begin":144,"end":145},"obj":"-RRB-"},{"id":"T2175","span":{"begin":145,"end":146},"obj":"."},{"id":"T2176","span":{"begin":147,"end":149},"obj":"IN"},{"id":"T2177","span":{"begin":150,"end":153},"obj":"NNP"},{"id":"T2178","span":{"begin":153,"end":154},"obj":","},{"id":"T2179","span":{"begin":155,"end":166},"obj":"NN"},{"id":"T2180","span":{"begin":167,"end":169},"obj":"VBZ"},{"id":"T2181","span":{"begin":170,"end":175},"obj":"VBN"},{"id":"T2182","span":{"begin":176,"end":178},"obj":"TO"},{"id":"T2183","span":{"begin":179,"end":187},"obj":"VB"}],"relations":[{"id":"R1684","pred":"nsubj","subj":"T2150","obj":"T2155"},{"id":"R1686","pred":"prep","subj":"T2151","obj":"T2150"},{"id":"R1687","pred":"amod","subj":"T2152","obj":"T2154"},{"id":"R1688","pred":"amod","subj":"T2153","obj":"T2154"},{"id":"R1690","pred":"pobj","subj":"T2154","obj":"T2151"},{"id":"R1691","pred":"ROOT","subj":"T2155","obj":"T2155"},{"id":"R1692","pred":"attr","subj":"T2156","obj":"T2155"},{"id":"R1694","pred":"punct","subj":"T2157","obj":"T2156"},{"id":"R1696","pred":"conj","subj":"T2158","obj":"T2156"},{"id":"R1697","pred":"punct","subj":"T2159","obj":"T2158"},{"id":"R1698","pred":"conj","subj":"T2160","obj":"T2158"},{"id":"R1699","pred":"punct","subj":"T2161","obj":"T2160"},{"id":"R1701","pred":"conj","subj":"T2162","obj":"T2160"},{"id":"R1703","pred":"punct","subj":"T2163","obj":"T2162"},{"id":"R1705","pred":"conj","subj":"T2164","obj":"T2162"},{"id":"R1706","pred":"punct","subj":"T2165","obj":"T2164"},{"id":"R1707","pred":"conj","subj":"T2166","obj":"T2164"},{"id":"R1708","pred":"punct","subj":"T2167","obj":"T2166"},{"id":"R1709","pred":"conj","subj":"T2168","obj":"T2166"},{"id":"R1711","pred":"cc","subj":"T2169","obj":"T2168"},{"id":"R1712","pred":"conj","subj":"T2170","obj":"T2168"},{"id":"R1713","pred":"punct","subj":"T2171","obj":"T2170"},{"id":"R1715","pred":"nummod","subj":"T2172","obj":"T2170"},{"id":"R1716","pred":"nummod","subj":"T2173","obj":"T2170"},{"id":"R1718","pred":"punct","subj":"T2174","obj":"T2170"},{"id":"R1719","pred":"punct","subj":"T2175","obj":"T2155"},{"id":"R1720","pred":"prep","subj":"T2176","obj":"T2181"},{"id":"R1722","pred":"pobj","subj":"T2177","obj":"T2176"},{"id":"R1723","pred":"punct","subj":"T2178","obj":"T2181"},{"id":"R1724","pred":"nsubjpass","subj":"T2179","obj":"T2181"},{"id":"R1726","pred":"auxpass","subj":"T2180","obj":"T2181"},{"id":"R1727","pred":"ROOT","subj":"T2181","obj":"T2181"},{"id":"R1728","pred":"aux","subj":"T2182","obj":"T2183"},{"id":"R1730","pred":"xcomp","subj":"T2183","obj":"T2181"},{"id":"R1944","pred":"prep","subj":"T2143","obj":"T2142"},{"id":"R1945","pred":"pobj","subj":"T2144","obj":"T2143"},{"id":"R1946","pred":"punct","subj":"T2145","obj":"T2147"},{"id":"R1947","pred":"nummod","subj":"T2146","obj":"T2147"},{"id":"R1948","pred":"ROOT","subj":"T2147","obj":"T2147"},{"id":"R1949","pred":"punct","subj":"T2148","obj":"T2147"}],"text":" involved in tumorigenesis (15–17). Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19). In CML, methylation is known to regulate expressi"}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T1093","span":{"begin":155,"end":166},"obj":"http://purl.obolibrary.org/obo/GO_0032259"},{"id":"T1102","span":{"begin":74,"end":78},"obj":"http://purl.obolibrary.org/obo/GO_0003908"}],"text":" involved in tumorigenesis (15–17). Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19). In CML, methylation is known to regulate expressi"}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T2354","span":{"begin":74,"end":78},"obj":"http://purl.obolibrary.org/obo/GO_0003908"}],"text":" involved in tumorigenesis (15–17). Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19). In CML, methylation is known to regulate expressi"}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T2612","span":{"begin":74,"end":78},"obj":"Protein"},{"id":"T2613","span":{"begin":80,"end":84},"obj":"Protein"},{"id":"T2614","span":{"begin":86,"end":92},"obj":"Protein"},{"id":"T2615","span":{"begin":94,"end":102},"obj":"Protein"},{"id":"T2616","span":{"begin":104,"end":112},"obj":"Protein"},{"id":"T2617","span":{"begin":114,"end":119},"obj":"Protein"},{"id":"T2618","span":{"begin":121,"end":126},"obj":"Protein"},{"id":"T2619","span":{"begin":131,"end":137},"obj":"Protein"},{"id":"T2625","span":{"begin":179,"end":187},"obj":"Regulation"},{"id":"T2626","span":{"begin":179,"end":187},"obj":"Regulation"}],"text":" involved in tumorigenesis (15–17). Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19). In CML, methylation is known to regulate expressi"}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T1032","span":{"begin":74,"end":78},"obj":"Protein"},{"id":"T1033","span":{"begin":80,"end":84},"obj":"Protein"},{"id":"T1034","span":{"begin":86,"end":92},"obj":"Protein"},{"id":"T1035","span":{"begin":94,"end":102},"obj":"Protein"},{"id":"T1036","span":{"begin":104,"end":112},"obj":"Protein"},{"id":"T1037","span":{"begin":114,"end":119},"obj":"Protein"},{"id":"T1038","span":{"begin":121,"end":126},"obj":"Protein"},{"id":"T1039","span":{"begin":131,"end":137},"obj":"Protein"},{"id":"T1040","span":{"begin":179,"end":187},"obj":"Regulation"},{"id":"T1041","span":{"begin":179,"end":187},"obj":"Regulation"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":" involved in tumorigenesis (15–17). Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19). In CML, methylation is known to regulate expressi"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T1700","span":{"begin":74,"end":78},"obj":"P16455"},{"id":"T1701","span":{"begin":80,"end":84},"obj":"P53355"},{"id":"T1702","span":{"begin":86,"end":92},"obj":"Q8N726"},{"id":"T1703","span":{"begin":94,"end":102},"obj":"P42772"},{"id":"T1704","span":{"begin":104,"end":112},"obj":"P42771"},{"id":"T1705","span":{"begin":114,"end":119},"obj":"Q3B891"},{"id":"T1706","span":{"begin":121,"end":126},"obj":"P55290"},{"id":"T1707","span":{"begin":131,"end":137},"obj":"O14727"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":" involved in tumorigenesis (15–17). Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19). In CML, methylation is known to regulate expressi"}

    test2

    {"project":"test2","denotations":[{"id":"T981","span":{"begin":74,"end":78},"obj":"Protein"},{"id":"T982","span":{"begin":80,"end":84},"obj":"Protein"},{"id":"T983","span":{"begin":86,"end":92},"obj":"Protein"},{"id":"T984","span":{"begin":94,"end":102},"obj":"Protein"},{"id":"T985","span":{"begin":104,"end":112},"obj":"Protein"},{"id":"T986","span":{"begin":114,"end":119},"obj":"Protein"},{"id":"T987","span":{"begin":121,"end":126},"obj":"Protein"},{"id":"T988","span":{"begin":131,"end":137},"obj":"Protein"},{"id":"T989","span":{"begin":179,"end":187},"obj":"Regulation"}],"text":" involved in tumorigenesis (15–17). Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19). In CML, methylation is known to regulate expressi"}