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PMC:1310901 / 4093-4289 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T2653 179-187 Regulation denotes regulate
T2655 179-187 Regulation denotes regulate
T2678 74-78 Protein denotes MGMT
T2679 80-84 Protein denotes DAPK
T2681 86-92 Protein denotes p14ARF
T2682 94-102 Protein denotes p15INK4b
T2683 104-112 Protein denotes p16INK4a
T2684 114-119 Protein denotes BRCA1
T2685 121-126 Protein denotes CDH13
T2686 131-137 Protein denotes APAF-1

events-check-again

Id Subject Object Predicate Lexical cue
T2543 74-78 Protein denotes MGMT
T2544 80-84 Protein denotes DAPK
T2545 86-92 Protein denotes p14ARF
T2546 94-102 Protein denotes p15INK4b
T2547 104-112 Protein denotes p16INK4a
T2548 114-119 Protein denotes BRCA1
T2549 121-126 Protein denotes CDH13
T2550 131-137 Protein denotes APAF-1
T2551 179-187 Regulation denotes regulate
T2552 179-187 Regulation denotes regulate

sentences

Id Subject Object Predicate Lexical cue
T1069 36-146 Sentence denotes Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19).
T27 36-146 Sentence denotes Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19).

2_test

Id Subject Object Predicate Lexical cue
16396836-9639410-76538175 28-30 9639410 denotes 15
16396836-10729832-76538175 28-30 10729832 denotes 15
16396836-11748635-76538175 28-30 11748635 denotes 15
16396836-11748635-76538176 139-141 11748635 denotes 17
16396836-9041182-76538176 139-141 9041182 denotes 17
16396836-12154405-76538176 139-141 12154405 denotes 17

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1500 1-9 VB denotes involved
T1501 10-12 IN denotes in
T1502 13-26 NN denotes tumorigenesis
T1503 27-28 -LRB- denotes (
T1504 28-33 CD denotes 15–17
T1505 33-34 -RRB- denotes )
T1506 36-44 NN denotes Examples
T1507 45-48 IN denotes for
T1508 49-53 JJ denotes such
T1509 54-63 JJ denotes aberrated
T1510 64-69 NN denotes genes
T1511 70-73 VB denotes are
T1512 74-78 NNP denotes MGMT
T1513 78-79 -COMMA- denotes ,
T1514 80-84 NNP denotes DAPK
T1515 84-85 -COMMA- denotes ,
T1516 86-92 NN denotes p14ARF
T1517 92-93 -COMMA- denotes ,
T1518 94-102 NN denotes p15INK4b
T1519 102-103 -COMMA- denotes ,
T1520 104-112 NN denotes p16INK4a
T1521 112-113 -COMMA- denotes ,
T1522 114-119 NN denotes BRCA1
T1523 119-120 -COMMA- denotes ,
T1524 121-126 NN denotes CDH13
T1525 127-130 CC denotes and
T1526 131-137 NN denotes APAF-1
T1527 138-139 -LRB- denotes (
T1528 139-144 CD denotes 17–19
T1529 144-145 -RRB- denotes )
T1530 147-149 IN denotes In
T1531 150-153 NN denotes CML
T1532 153-154 -COMMA- denotes ,
T1533 155-166 NN denotes methylation
T1534 167-169 VB denotes is
T1535 170-175 VB denotes known
T1536 176-178 TO denotes to
T1537 179-187 VB denotes regulate
R1168 T1500 T1501 arg1Of involved,in
R1169 T1502 T1501 arg2Of tumorigenesis,in
R1170 T1502 T1503 arg1Of tumorigenesis,(
R1171 T1504 T1503 arg2Of 15–17,(
R1172 T1505 T1503 arg3Of ),(
R1173 T1506 T1507 arg1Of Examples,for
R1174 T1506 T1511 arg1Of Examples,are
R1175 T1509 T1508 arg1Of aberrated,such
R1176 T1510 T1507 arg2Of genes,for
R1177 T1510 T1509 arg1Of genes,aberrated
R1178 T1512 T1513 arg1Of MGMT,","
R1179 T1513 T1515 arg1Of ",",","
R1180 T1514 T1513 arg2Of DAPK,","
R1181 T1515 T1517 arg1Of ",",","
R1182 T1516 T1515 arg2Of p14ARF,","
R1183 T1517 T1519 arg1Of ",",","
R1184 T1518 T1517 arg2Of p15INK4b,","
R1185 T1519 T1521 arg1Of ",",","
R1186 T1520 T1519 arg2Of p16INK4a,","
R1187 T1521 T1523 arg1Of ",",","
R1188 T1522 T1521 arg2Of BRCA1,","
R1189 T1523 T1525 arg1Of ",",and
R1190 T1524 T1523 arg2Of CDH13,","
R1191 T1525 T1511 arg2Of and,are
R1192 T1526 T1525 arg2Of APAF-1,and
R1193 T1526 T1527 arg1Of APAF-1,(
R1194 T1528 T1527 arg2Of 17–19,(
R1195 T1529 T1527 arg3Of ),(
R1196 T1531 T1530 arg2Of CML,In
R1197 T1533 T1534 arg1Of methylation,is
R1198 T1533 T1535 arg2Of methylation,known
R1199 T1533 T1537 arg1Of methylation,regulate
R1200 T1535 T1534 arg2Of known,is
R1202 T1537 T1535 arg3Of regulate,known
R1203 T1537 T1536 arg1Of regulate,to

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2142 1-9 VBN denotes involved
T2143 10-12 IN denotes in
T2144 13-26 NN denotes tumorigenesis
T2145 27-28 -LRB- denotes (
T2146 28-30 CD denotes 15
T2147 31-33 CD denotes 17
T2148 33-34 -RRB- denotes )
T2149 34-35 . denotes .
T2150 36-44 NNS denotes Examples
T2151 45-48 IN denotes for
T2152 49-53 JJ denotes such
T2153 54-63 JJ denotes aberrated
T2154 64-69 NNS denotes genes
T2155 70-73 VBP denotes are
T2156 74-78 NNP denotes MGMT
T2157 78-79 , denotes ,
T2158 80-84 NNP denotes DAPK
T2159 84-85 , denotes ,
T2160 86-92 NNP denotes p14ARF
T2161 92-93 , denotes ,
T2162 94-102 NNP denotes p15INK4b
T2163 102-103 , denotes ,
T2164 104-112 NNP denotes p16INK4a
T2165 112-113 , denotes ,
T2166 114-119 NNP denotes BRCA1
T2167 119-120 , denotes ,
T2168 121-126 NNP denotes CDH13
T2169 127-130 CC denotes and
T2170 131-137 NNP denotes APAF-1
T2171 138-139 -LRB- denotes (
T2172 139-141 CD denotes 17
T2173 142-144 CD denotes 19
T2174 144-145 -RRB- denotes )
T2175 145-146 . denotes .
T2176 147-149 IN denotes In
T2177 150-153 NNP denotes CML
T2178 153-154 , denotes ,
T2179 155-166 NN denotes methylation
T2180 167-169 VBZ denotes is
T2181 170-175 VBN denotes known
T2182 176-178 TO denotes to
T2183 179-187 VB denotes regulate
R1684 T2150 T2155 nsubj Examples,are
R1686 T2151 T2150 prep for,Examples
R1687 T2152 T2154 amod such,genes
R1688 T2153 T2154 amod aberrated,genes
R1690 T2154 T2151 pobj genes,for
R1691 T2155 T2155 ROOT are,are
R1692 T2156 T2155 attr MGMT,are
R1694 T2157 T2156 punct ",",MGMT
R1696 T2158 T2156 conj DAPK,MGMT
R1697 T2159 T2158 punct ",",DAPK
R1698 T2160 T2158 conj p14ARF,DAPK
R1699 T2161 T2160 punct ",",p14ARF
R1701 T2162 T2160 conj p15INK4b,p14ARF
R1703 T2163 T2162 punct ",",p15INK4b
R1705 T2164 T2162 conj p16INK4a,p15INK4b
R1706 T2165 T2164 punct ",",p16INK4a
R1707 T2166 T2164 conj BRCA1,p16INK4a
R1708 T2167 T2166 punct ",",BRCA1
R1709 T2168 T2166 conj CDH13,BRCA1
R1711 T2169 T2168 cc and,CDH13
R1712 T2170 T2168 conj APAF-1,CDH13
R1713 T2171 T2170 punct (,APAF-1
R1715 T2172 T2170 nummod 17,APAF-1
R1716 T2173 T2170 nummod 19,APAF-1
R1718 T2174 T2170 punct ),APAF-1
R1719 T2175 T2155 punct .,are
R1720 T2176 T2181 prep In,known
R1722 T2177 T2176 pobj CML,In
R1723 T2178 T2181 punct ",",known
R1724 T2179 T2181 nsubjpass methylation,known
R1726 T2180 T2181 auxpass is,known
R1727 T2181 T2181 ROOT known,known
R1728 T2182 T2183 aux to,regulate
R1730 T2183 T2181 xcomp regulate,known
R1944 T2143 T2142 prep in,involved
R1945 T2144 T2143 pobj tumorigenesis,in
R1946 T2145 T2147 punct (,17
R1947 T2146 T2147 nummod 15,17
R1948 T2147 T2147 ROOT 17,17
R1949 T2148 T2147 punct ),17

GO-BP

Id Subject Object Predicate Lexical cue
T1093 155-166 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation
T1102 74-78 http://purl.obolibrary.org/obo/GO_0003908 denotes MGMT

GO-MF

Id Subject Object Predicate Lexical cue
T2354 74-78 http://purl.obolibrary.org/obo/GO_0003908 denotes MGMT

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2612 74-78 Protein denotes MGMT
T2613 80-84 Protein denotes DAPK
T2614 86-92 Protein denotes p14ARF
T2615 94-102 Protein denotes p15INK4b
T2616 104-112 Protein denotes p16INK4a
T2617 114-119 Protein denotes BRCA1
T2618 121-126 Protein denotes CDH13
T2619 131-137 Protein denotes APAF-1
T2625 179-187 Regulation denotes regulate
T2626 179-187 Regulation denotes regulate

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1032 74-78 Protein denotes MGMT
T1033 80-84 Protein denotes DAPK
T1034 86-92 Protein denotes p14ARF
T1035 94-102 Protein denotes p15INK4b
T1036 104-112 Protein denotes p16INK4a
T1037 114-119 Protein denotes BRCA1
T1038 121-126 Protein denotes CDH13
T1039 131-137 Protein denotes APAF-1
T1040 179-187 Regulation denotes regulate
T1041 179-187 Regulation denotes regulate

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1700 74-78 P16455 denotes MGMT
T1701 80-84 P53355 denotes DAPK
T1702 86-92 Q8N726 denotes p14ARF
T1703 94-102 P42772 denotes p15INK4b
T1704 104-112 P42771 denotes p16INK4a
T1705 114-119 Q3B891 denotes BRCA1
T1706 121-126 P55290 denotes CDH13
T1707 131-137 O14727 denotes APAF-1

test2

Id Subject Object Predicate Lexical cue
T981 74-78 Protein denotes MGMT
T982 80-84 Protein denotes DAPK
T983 86-92 Protein denotes p14ARF
T984 94-102 Protein denotes p15INK4b
T985 104-112 Protein denotes p16INK4a
T986 114-119 Protein denotes BRCA1
T987 121-126 Protein denotes CDH13
T988 131-137 Protein denotes APAF-1
T989 179-187 Regulation denotes regulate