PMC:1310901 / 3024-3263 JSONTXT

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    bionlp-st-ge-2016-reference-eval

    {"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T2666","span":{"begin":53,"end":61},"obj":"Gene_expression"},{"id":"T2667","span":{"begin":97,"end":107},"obj":"Gene_expression"},{"id":"T2668","span":{"begin":127,"end":134},"obj":"Positive_regulation"},{"id":"T2673","span":{"begin":47,"end":52},"obj":"Protein"},{"id":"T2674","span":{"begin":111,"end":116},"obj":"Protein"}],"relations":[{"id":"R2083","pred":"themeOf","subj":"T2667","obj":"T2668"},{"id":"R2091","pred":"themeOf","subj":"T2673","obj":"T2666"},{"id":"R2092","pred":"themeOf","subj":"T2674","obj":"T2667"}],"text":"edominately B- and activated T-lymphocytes are IRF-4 positive (7–11). In contrast to other IRFs, expression of IRF-4 cannot be induced by IFNs, but by antigen stimulation, crosslinking of T- or B-cell receptors or phorbol-myristate-acetate"}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T2533","span":{"begin":47,"end":52},"obj":"Protein"},{"id":"T2534","span":{"begin":53,"end":61},"obj":"Gene_expression"},{"id":"T2535","span":{"begin":97,"end":107},"obj":"Gene_expression"},{"id":"T2536","span":{"begin":111,"end":116},"obj":"Protein"},{"id":"T2537","span":{"begin":127,"end":134},"obj":"Positive_regulation"}],"relations":[{"id":"R2037","pred":"themeOf","subj":"T2533","obj":"T2534"},{"id":"R2040","pred":"themeOf","subj":"T2535","obj":"T2537"},{"id":"R2044","pred":"themeOf","subj":"T2536","obj":"T2535"}],"attributes":[{"id":"M48","pred":"Negation","subj":"T2537","obj":"true"}],"text":"edominately B- and activated T-lymphocytes are IRF-4 positive (7–11). In contrast to other IRFs, expression of IRF-4 cannot be induced by IFNs, but by antigen stimulation, crosslinking of T- or B-cell receptors or phorbol-myristate-acetate"}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T2361","span":{"begin":196,"end":200},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"edominately B- and activated T-lymphocytes are IRF-4 positive (7–11). In contrast to other IRFs, expression of IRF-4 cannot be induced by IFNs, but by antigen stimulation, crosslinking of T- or B-cell receptors or phorbol-myristate-acetate"}

    2_test

    {"project":"2_test","denotations":[{"id":"16396836-7797077-76538168","span":{"begin":63,"end":64},"obj":"7797077"},{"id":"16396836-7541907-76538168","span":{"begin":63,"end":64},"obj":"7541907"},{"id":"16396836-8657101-76538168","span":{"begin":63,"end":64},"obj":"8657101"},{"id":"16396836-11846983-76538168","span":{"begin":63,"end":64},"obj":"11846983"},{"id":"16396836-11846982-76538168","span":{"begin":63,"end":64},"obj":"11846982"}],"text":"edominately B- and activated T-lymphocytes are IRF-4 positive (7–11). In contrast to other IRFs, expression of IRF-4 cannot be induced by IFNs, but by antigen stimulation, crosslinking of T- or B-cell receptors or phorbol-myristate-acetate"}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T1315","span":{"begin":12,"end":14},"obj":"NN"},{"id":"T1316","span":{"begin":15,"end":18},"obj":"CC"},{"id":"T1317","span":{"begin":19,"end":28},"obj":"VB"},{"id":"T1318","span":{"begin":29,"end":42},"obj":"NN"},{"id":"T1319","span":{"begin":43,"end":46},"obj":"VB"},{"id":"T1320","span":{"begin":47,"end":52},"obj":"NN"},{"id":"T1321","span":{"begin":53,"end":61},"obj":"JJ"},{"id":"T1322","span":{"begin":62,"end":63},"obj":"-LRB-"},{"id":"T1323","span":{"begin":63,"end":67},"obj":"CD"},{"id":"T1324","span":{"begin":67,"end":68},"obj":"-RRB-"},{"id":"T1325","span":{"begin":70,"end":72},"obj":"IN"},{"id":"T1326","span":{"begin":73,"end":81},"obj":"NN"},{"id":"T1327","span":{"begin":82,"end":84},"obj":"TO"},{"id":"T1328","span":{"begin":85,"end":90},"obj":"JJ"},{"id":"T1329","span":{"begin":91,"end":95},"obj":"NN"},{"id":"T1330","span":{"begin":95,"end":96},"obj":"-COMMA-"},{"id":"T1331","span":{"begin":97,"end":107},"obj":"NN"},{"id":"T1332","span":{"begin":108,"end":110},"obj":"IN"},{"id":"T1333","span":{"begin":111,"end":116},"obj":"NN"},{"id":"T1334","span":{"begin":117,"end":120},"obj":"MD"},{"id":"T1335","span":{"begin":120,"end":123},"obj":"RB"},{"id":"T1336","span":{"begin":124,"end":126},"obj":"VB"},{"id":"T1337","span":{"begin":127,"end":134},"obj":"VB"},{"id":"T1338","span":{"begin":135,"end":137},"obj":"IN"},{"id":"T1339","span":{"begin":138,"end":142},"obj":"NN"},{"id":"T1340","span":{"begin":142,"end":143},"obj":"-COMMA-"},{"id":"T1341","span":{"begin":144,"end":147},"obj":"CC"},{"id":"T1342","span":{"begin":148,"end":150},"obj":"IN"},{"id":"T1343","span":{"begin":151,"end":158},"obj":"NN"},{"id":"T1344","span":{"begin":159,"end":170},"obj":"NN"},{"id":"T1345","span":{"begin":170,"end":171},"obj":"-COMMA-"},{"id":"T1346","span":{"begin":172,"end":184},"obj":"NN"},{"id":"T1347","span":{"begin":185,"end":187},"obj":"IN"},{"id":"T1348","span":{"begin":188,"end":190},"obj":"NN"},{"id":"T1349","span":{"begin":191,"end":193},"obj":"CC"},{"id":"T1350","span":{"begin":194,"end":200},"obj":"NN"},{"id":"T1351","span":{"begin":201,"end":210},"obj":"NN"},{"id":"T1352","span":{"begin":211,"end":213},"obj":"CC"},{"id":"T1353","span":{"begin":214,"end":239},"obj":"NN"}],"relations":[{"id":"R980","pred":"arg1Of","subj":"T1315","obj":"T1316"},{"id":"R981","pred":"arg1Of","subj":"T1316","obj":"T1319"},{"id":"R982","pred":"arg2Of","subj":"T1318","obj":"T1316"},{"id":"R983","pred":"arg2Of","subj":"T1318","obj":"T1317"},{"id":"R984","pred":"arg2Of","subj":"T1320","obj":"T1319"},{"id":"R985","pred":"arg1Of","subj":"T1320","obj":"T1321"},{"id":"R986","pred":"arg1Of","subj":"T1320","obj":"T1322"},{"id":"R987","pred":"arg2Of","subj":"T1323","obj":"T1322"},{"id":"R988","pred":"arg3Of","subj":"T1324","obj":"T1322"},{"id":"R989","pred":"arg2Of","subj":"T1326","obj":"T1325"},{"id":"R990","pred":"arg1Of","subj":"T1326","obj":"T1327"},{"id":"R991","pred":"arg2Of","subj":"T1329","obj":"T1327"},{"id":"R992","pred":"arg1Of","subj":"T1329","obj":"T1328"},{"id":"R993","pred":"arg1Of","subj":"T1331","obj":"T1332"},{"id":"R994","pred":"arg1Of","subj":"T1331","obj":"T1334"},{"id":"R995","pred":"arg1Of","subj":"T1331","obj":"T1336"},{"id":"R996","pred":"arg2Of","subj":"T1331","obj":"T1337"},{"id":"R997","pred":"arg2Of","subj":"T1333","obj":"T1332"},{"id":"R998","pred":"arg1Of","subj":"T1337","obj":"T1325"},{"id":"R999","pred":"arg1Of","subj":"T1337","obj":"T1330"},{"id":"R1000","pred":"arg2Of","subj":"T1337","obj":"T1334"},{"id":"R1001","pred":"arg1Of","subj":"T1337","obj":"T1335"},{"id":"R1002","pred":"arg2Of","subj":"T1337","obj":"T1336"},{"id":"R1003","pred":"arg1Of","subj":"T1337","obj":"T1341"},{"id":"R1004","pred":"arg1Of","subj":"T1337","obj":"T1342"},{"id":"R1005","pred":"arg1Of","subj":"T1339","obj":"T1337"},{"id":"R1006","pred":"arg2Of","subj":"T1339","obj":"T1338"},{"id":"R1007","pred":"arg1Of","subj":"T1341","obj":"T1340"},{"id":"R1008","pred":"arg1Of","subj":"T1344","obj":"T1343"},{"id":"R1009","pred":"arg1Of","subj":"T1344","obj":"T1345"},{"id":"R1010","pred":"arg1Of","subj":"T1345","obj":"T1352"},{"id":"R1011","pred":"arg2Of","subj":"T1346","obj":"T1345"},{"id":"R1012","pred":"arg1Of","subj":"T1346","obj":"T1347"},{"id":"R1013","pred":"arg1Of","subj":"T1348","obj":"T1349"},{"id":"R1014","pred":"arg2Of","subj":"T1350","obj":"T1349"},{"id":"R1015","pred":"arg2Of","subj":"T1351","obj":"T1347"},{"id":"R1016","pred":"arg1Of","subj":"T1351","obj":"T1348"},{"id":"R1017","pred":"arg1Of","subj":"T1351","obj":"T1350"},{"id":"R1018","pred":"arg2Of","subj":"T1352","obj":"T1342"},{"id":"R1019","pred":"arg2Of","subj":"T1353","obj":"T1352"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"edominately B- and activated T-lymphocytes are IRF-4 positive (7–11). In contrast to other IRFs, expression of IRF-4 cannot be induced by IFNs, but by antigen stimulation, crosslinking of T- or B-cell receptors or phorbol-myristate-acetate"}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T1947","span":{"begin":12,"end":13},"obj":"NNP"},{"id":"T1948","span":{"begin":13,"end":14},"obj":":"},{"id":"T1949","span":{"begin":15,"end":18},"obj":"CC"},{"id":"T1950","span":{"begin":19,"end":28},"obj":"VBN"},{"id":"T1951","span":{"begin":29,"end":42},"obj":"NNS"},{"id":"T1952","span":{"begin":43,"end":46},"obj":"VBP"},{"id":"T1953","span":{"begin":47,"end":52},"obj":"JJ"},{"id":"T1954","span":{"begin":53,"end":61},"obj":"JJ"},{"id":"T1955","span":{"begin":62,"end":63},"obj":"-LRB-"},{"id":"T1956","span":{"begin":63,"end":64},"obj":"CD"},{"id":"T1957","span":{"begin":65,"end":67},"obj":"CD"},{"id":"T1958","span":{"begin":67,"end":68},"obj":"-RRB-"},{"id":"T1959","span":{"begin":68,"end":69},"obj":"."},{"id":"T1960","span":{"begin":70,"end":72},"obj":"IN"},{"id":"T1961","span":{"begin":73,"end":81},"obj":"NN"},{"id":"T1962","span":{"begin":82,"end":84},"obj":"TO"},{"id":"T1963","span":{"begin":85,"end":90},"obj":"JJ"},{"id":"T1964","span":{"begin":91,"end":95},"obj":"NNS"},{"id":"T1965","span":{"begin":95,"end":96},"obj":","},{"id":"T1966","span":{"begin":97,"end":107},"obj":"NN"},{"id":"T1967","span":{"begin":108,"end":110},"obj":"IN"},{"id":"T1968","span":{"begin":111,"end":116},"obj":"NN"},{"id":"T1969","span":{"begin":117,"end":120},"obj":"MD"},{"id":"T1970","span":{"begin":120,"end":123},"obj":"RB"},{"id":"T1971","span":{"begin":124,"end":126},"obj":"VB"},{"id":"T1972","span":{"begin":127,"end":134},"obj":"VBN"},{"id":"T1973","span":{"begin":135,"end":137},"obj":"IN"},{"id":"T1974","span":{"begin":138,"end":142},"obj":"NNS"},{"id":"T1975","span":{"begin":142,"end":143},"obj":","},{"id":"T1976","span":{"begin":144,"end":147},"obj":"CC"},{"id":"T1977","span":{"begin":148,"end":150},"obj":"IN"},{"id":"T1978","span":{"begin":151,"end":158},"obj":"NN"},{"id":"T1979","span":{"begin":159,"end":170},"obj":"NN"},{"id":"T1980","span":{"begin":170,"end":171},"obj":","},{"id":"T1981","span":{"begin":172,"end":184},"obj":"NN"},{"id":"T1982","span":{"begin":185,"end":187},"obj":"IN"},{"id":"T1983","span":{"begin":188,"end":189},"obj":"SYM"},{"id":"T1984","span":{"begin":189,"end":190},"obj":":"},{"id":"T1985","span":{"begin":191,"end":193},"obj":"CC"},{"id":"T1986","span":{"begin":194,"end":200},"obj":"NNP"},{"id":"T1987","span":{"begin":201,"end":210},"obj":"NNS"},{"id":"T1988","span":{"begin":211,"end":213},"obj":"CC"},{"id":"T1989","span":{"begin":214,"end":239},"obj":"NN"}],"relations":[{"id":"R1541","pred":"punct","subj":"T1955","obj":"T1957"},{"id":"R1543","pred":"nummod","subj":"T1956","obj":"T1957"},{"id":"R1544","pred":"nmod","subj":"T1957","obj":"T1958"},{"id":"R1546","pred":"punct","subj":"T1958","obj":"T1952"},{"id":"R1548","pred":"prep","subj":"T1960","obj":"T1972"},{"id":"R1550","pred":"pobj","subj":"T1961","obj":"T1960"},{"id":"R1551","pred":"prep","subj":"T1962","obj":"T1961"},{"id":"R1553","pred":"amod","subj":"T1963","obj":"T1964"},{"id":"R1554","pred":"pobj","subj":"T1964","obj":"T1962"},{"id":"R1555","pred":"punct","subj":"T1965","obj":"T1964"},{"id":"R1556","pred":"nsubjpass","subj":"T1966","obj":"T1972"},{"id":"R1557","pred":"prep","subj":"T1967","obj":"T1966"},{"id":"R1558","pred":"pobj","subj":"T1968","obj":"T1967"},{"id":"R1560","pred":"aux","subj":"T1969","obj":"T1972"},{"id":"R1562","pred":"neg","subj":"T1970","obj":"T1972"},{"id":"R1564","pred":"auxpass","subj":"T1971","obj":"T1972"},{"id":"R1565","pred":"ROOT","subj":"T1972","obj":"T1972"},{"id":"R1566","pred":"agent","subj":"T1973","obj":"T1972"},{"id":"R1568","pred":"pobj","subj":"T1974","obj":"T1973"},{"id":"R1569","pred":"punct","subj":"T1975","obj":"T1972"},{"id":"R1570","pred":"cc","subj":"T1976","obj":"T1972"},{"id":"R1572","pred":"conj","subj":"T1977","obj":"T1972"},{"id":"R1573","pred":"compound","subj":"T1978","obj":"T1979"},{"id":"R1575","pred":"pobj","subj":"T1979","obj":"T1977"},{"id":"R1576","pred":"punct","subj":"T1980","obj":"T1972"},{"id":"R1578","pred":"conj","subj":"T1981","obj":"T1972"},{"id":"R1579","pred":"prep","subj":"T1982","obj":"T1981"},{"id":"R1580","pred":"punct","subj":"T1983","obj":"T1982"},{"id":"R1583","pred":"punct","subj":"T1984","obj":"T1983"},{"id":"R1584","pred":"cc","subj":"T1985","obj":"T1981"},{"id":"R1585","pred":"compound","subj":"T1986","obj":"T1987"},{"id":"R1586","pred":"conj","subj":"T1987","obj":"T1981"},{"id":"R1587","pred":"cc","subj":"T1988","obj":"T1987"},{"id":"R1588","pred":"conj","subj":"T1989","obj":"T1987"},{"id":"R1637","pred":"nsubj","subj":"T1947","obj":"T1952"},{"id":"R1640","pred":"punct","subj":"T1948","obj":"T1947"},{"id":"R1643","pred":"cc","subj":"T1949","obj":"T1947"},{"id":"R1647","pred":"amod","subj":"T1950","obj":"T1951"},{"id":"R1651","pred":"conj","subj":"T1951","obj":"T1947"},{"id":"R1653","pred":"ROOT","subj":"T1952","obj":"T1952"},{"id":"R1659","pred":"amod","subj":"T1953","obj":"T1954"},{"id":"R1663","pred":"acomp","subj":"T1954","obj":"T1952"}],"text":"edominately B- and activated T-lymphocytes are IRF-4 positive (7–11). In contrast to other IRFs, expression of IRF-4 cannot be induced by IFNs, but by antigen stimulation, crosslinking of T- or B-cell receptors or phorbol-myristate-acetate"}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T1086","span":{"begin":19,"end":42},"obj":"http://purl.obolibrary.org/obo/GO_0050798"},{"id":"T1087","span":{"begin":19,"end":42},"obj":"http://purl.obolibrary.org/obo/GO_0051132"},{"id":"T1088","span":{"begin":19,"end":42},"obj":"http://purl.obolibrary.org/obo/GO_0042110"},{"id":"T1089","span":{"begin":19,"end":42},"obj":"http://purl.obolibrary.org/obo/GO_0050863"},{"id":"T1090","span":{"begin":194,"end":210},"obj":"http://purl.obolibrary.org/obo/GO_0002452"}],"text":"edominately B- and activated T-lymphocytes are IRF-4 positive (7–11). In contrast to other IRFs, expression of IRF-4 cannot be induced by IFNs, but by antigen stimulation, crosslinking of T- or B-cell receptors or phorbol-myristate-acetate"}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T2595","span":{"begin":47,"end":52},"obj":"Protein"},{"id":"T2601","span":{"begin":53,"end":61},"obj":"Gene_expression"},{"id":"T2602","span":{"begin":91,"end":95},"obj":"Protein"},{"id":"T2603","span":{"begin":111,"end":116},"obj":"Protein"},{"id":"T2604","span":{"begin":138,"end":142},"obj":"Protein"},{"id":"T2605","span":{"begin":97,"end":107},"obj":"Gene_expression"},{"id":"T2606","span":{"begin":127,"end":134},"obj":"Positive_regulation"}],"relations":[{"id":"R2063","pred":"themeOf","subj":"T2595","obj":"T2601"},{"id":"R2065","pred":"themeOf","subj":"T2603","obj":"T2605"},{"id":"R2069","pred":"causeOf","subj":"T2604","obj":"T2606"},{"id":"R2070","pred":"themeOf","subj":"T2605","obj":"T2606"}],"text":"edominately B- and activated T-lymphocytes are IRF-4 positive (7–11). In contrast to other IRFs, expression of IRF-4 cannot be induced by IFNs, but by antigen stimulation, crosslinking of T- or B-cell receptors or phorbol-myristate-acetate"}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T1022","span":{"begin":47,"end":52},"obj":"Protein"},{"id":"T1023","span":{"begin":53,"end":61},"obj":"Gene_expression"},{"id":"T1024","span":{"begin":97,"end":107},"obj":"Gene_expression"},{"id":"T1025","span":{"begin":111,"end":116},"obj":"Protein"},{"id":"T1026","span":{"begin":127,"end":134},"obj":"Positive_regulation"}],"relations":[{"id":"R759","pred":"themeOf","subj":"T1022","obj":"T1023"},{"id":"R760","pred":"themeOf","subj":"T1024","obj":"T1026"},{"id":"R761","pred":"themeOf","subj":"T1025","obj":"T1024"}],"attributes":[{"id":"M40","pred":"Negation","subj":"T1026","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"edominately B- and activated T-lymphocytes are IRF-4 positive (7–11). In contrast to other IRFs, expression of IRF-4 cannot be induced by IFNs, but by antigen stimulation, crosslinking of T- or B-cell receptors or phorbol-myristate-acetate"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T1695","span":{"begin":47,"end":52},"obj":"Q15306"},{"id":"T1696","span":{"begin":111,"end":116},"obj":"Q15306"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"edominately B- and activated T-lymphocytes are IRF-4 positive (7–11). In contrast to other IRFs, expression of IRF-4 cannot be induced by IFNs, but by antigen stimulation, crosslinking of T- or B-cell receptors or phorbol-myristate-acetate"}

    test2

    {"project":"test2","denotations":[{"id":"T970","span":{"begin":47,"end":52},"obj":"Protein"},{"id":"T971","span":{"begin":53,"end":61},"obj":"Gene_expression"},{"id":"T972","span":{"begin":97,"end":107},"obj":"Gene_expression"},{"id":"T973","span":{"begin":111,"end":116},"obj":"Protein"},{"id":"T974","span":{"begin":127,"end":134},"obj":"Positive_regulation"}],"relations":[{"id":"R732","pred":"themeOf","subj":"T970","obj":"T971"},{"id":"R733","pred":"themeOf","subj":"T972","obj":"T974"},{"id":"R734","pred":"themeOf","subj":"T973","obj":"T972"}],"attributes":[{"id":"M39","pred":"Negation","subj":"T970","obj":"true"}],"text":"edominately B- and activated T-lymphocytes are IRF-4 positive (7–11). In contrast to other IRFs, expression of IRF-4 cannot be induced by IFNs, but by antigen stimulation, crosslinking of T- or B-cell receptors or phorbol-myristate-acetate"}