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PMC:1310901 / 3024-3263 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T2666 53-61 Gene_expression denotes positive
T2667 97-107 Gene_expression denotes expression
T2668 127-134 Positive_regulation denotes induced
T2673 47-52 Protein denotes IRF-4
T2674 111-116 Protein denotes IRF-4
R2083 T2667 T2668 themeOf expression,induced
R2091 T2673 T2666 themeOf IRF-4,positive
R2092 T2674 T2667 themeOf IRF-4,expression

events-check-again

Id Subject Object Predicate Lexical cue Negation
T2533 47-52 Protein denotes IRF-4
T2534 53-61 Gene_expression denotes positive
T2535 97-107 Gene_expression denotes expression
T2536 111-116 Protein denotes IRF-4
T2537 127-134 Positive_regulation denotes induced true
R2037 T2533 T2534 themeOf IRF-4,positive
R2040 T2535 T2537 themeOf expression,induced
R2044 T2536 T2535 themeOf IRF-4,expression

GO-CC

Id Subject Object Predicate Lexical cue
T2361 196-200 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

2_test

Id Subject Object Predicate Lexical cue
16396836-7797077-76538168 63-64 7797077 denotes 7
16396836-7541907-76538168 63-64 7541907 denotes 7
16396836-8657101-76538168 63-64 8657101 denotes 7
16396836-11846983-76538168 63-64 11846983 denotes 7
16396836-11846982-76538168 63-64 11846982 denotes 7

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1315 12-14 NN denotes B-
T1316 15-18 CC denotes and
T1317 19-28 VB denotes activated
T1318 29-42 NN denotes T-lymphocytes
T1319 43-46 VB denotes are
T1320 47-52 NN denotes IRF-4
T1321 53-61 JJ denotes positive
T1322 62-63 -LRB- denotes (
T1323 63-67 CD denotes 7–11
T1324 67-68 -RRB- denotes )
T1325 70-72 IN denotes In
T1326 73-81 NN denotes contrast
T1327 82-84 TO denotes to
T1328 85-90 JJ denotes other
T1329 91-95 NN denotes IRFs
T1330 95-96 -COMMA- denotes ,
T1331 97-107 NN denotes expression
T1332 108-110 IN denotes of
T1333 111-116 NN denotes IRF-4
T1334 117-120 MD denotes can
T1335 120-123 RB denotes not
T1336 124-126 VB denotes be
T1337 127-134 VB denotes induced
T1338 135-137 IN denotes by
T1339 138-142 NN denotes IFNs
T1340 142-143 -COMMA- denotes ,
T1341 144-147 CC denotes but
T1342 148-150 IN denotes by
T1343 151-158 NN denotes antigen
T1344 159-170 NN denotes stimulation
T1345 170-171 -COMMA- denotes ,
T1346 172-184 NN denotes crosslinking
T1347 185-187 IN denotes of
T1348 188-190 NN denotes T-
T1349 191-193 CC denotes or
T1350 194-200 NN denotes B-cell
T1351 201-210 NN denotes receptors
T1352 211-213 CC denotes or
T1353 214-239 NN denotes phorbol-myristate-acetate
R980 T1315 T1316 arg1Of B-,and
R981 T1316 T1319 arg1Of and,are
R982 T1318 T1316 arg2Of T-lymphocytes,and
R983 T1318 T1317 arg2Of T-lymphocytes,activated
R984 T1320 T1319 arg2Of IRF-4,are
R985 T1320 T1321 arg1Of IRF-4,positive
R986 T1320 T1322 arg1Of IRF-4,(
R987 T1323 T1322 arg2Of 7–11,(
R988 T1324 T1322 arg3Of ),(
R989 T1326 T1325 arg2Of contrast,In
R990 T1326 T1327 arg1Of contrast,to
R991 T1329 T1327 arg2Of IRFs,to
R992 T1329 T1328 arg1Of IRFs,other
R993 T1331 T1332 arg1Of expression,of
R994 T1331 T1334 arg1Of expression,can
R995 T1331 T1336 arg1Of expression,be
R996 T1331 T1337 arg2Of expression,induced
R997 T1333 T1332 arg2Of IRF-4,of
R998 T1337 T1325 arg1Of induced,In
R999 T1337 T1330 arg1Of induced,","
R1000 T1337 T1334 arg2Of induced,can
R1001 T1337 T1335 arg1Of induced,not
R1002 T1337 T1336 arg2Of induced,be
R1003 T1337 T1341 arg1Of induced,but
R1004 T1337 T1342 arg1Of induced,by
R1005 T1339 T1337 arg1Of IFNs,induced
R1006 T1339 T1338 arg2Of IFNs,by
R1007 T1341 T1340 arg1Of but,","
R1008 T1344 T1343 arg1Of stimulation,antigen
R1009 T1344 T1345 arg1Of stimulation,","
R1010 T1345 T1352 arg1Of ",",or
R1011 T1346 T1345 arg2Of crosslinking,","
R1012 T1346 T1347 arg1Of crosslinking,of
R1013 T1348 T1349 arg1Of T-,or
R1014 T1350 T1349 arg2Of B-cell,or
R1015 T1351 T1347 arg2Of receptors,of
R1016 T1351 T1348 arg1Of receptors,T-
R1017 T1351 T1350 arg1Of receptors,B-cell
R1018 T1352 T1342 arg2Of or,by
R1019 T1353 T1352 arg2Of phorbol-myristate-acetate,or

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1947 12-13 NNP denotes B
T1948 13-14 : denotes -
T1949 15-18 CC denotes and
T1950 19-28 VBN denotes activated
T1951 29-42 NNS denotes T-lymphocytes
T1952 43-46 VBP denotes are
T1953 47-52 JJ denotes IRF-4
T1954 53-61 JJ denotes positive
T1955 62-63 -LRB- denotes (
T1956 63-64 CD denotes 7
T1957 65-67 CD denotes 11
T1958 67-68 -RRB- denotes )
T1959 68-69 . denotes .
T1960 70-72 IN denotes In
T1961 73-81 NN denotes contrast
T1962 82-84 TO denotes to
T1963 85-90 JJ denotes other
T1964 91-95 NNS denotes IRFs
T1965 95-96 , denotes ,
T1966 97-107 NN denotes expression
T1967 108-110 IN denotes of
T1968 111-116 NN denotes IRF-4
T1969 117-120 MD denotes can
T1970 120-123 RB denotes not
T1971 124-126 VB denotes be
T1972 127-134 VBN denotes induced
T1973 135-137 IN denotes by
T1974 138-142 NNS denotes IFNs
T1975 142-143 , denotes ,
T1976 144-147 CC denotes but
T1977 148-150 IN denotes by
T1978 151-158 NN denotes antigen
T1979 159-170 NN denotes stimulation
T1980 170-171 , denotes ,
T1981 172-184 NN denotes crosslinking
T1982 185-187 IN denotes of
T1983 188-189 SYM denotes T
T1984 189-190 : denotes -
T1985 191-193 CC denotes or
T1986 194-200 NNP denotes B-cell
T1987 201-210 NNS denotes receptors
T1988 211-213 CC denotes or
T1989 214-239 NN denotes phorbol-myristate-acetate
R1541 T1955 T1957 punct (,11
R1543 T1956 T1957 nummod 7,11
R1544 T1957 T1958 nmod 11,)
R1546 T1958 T1952 punct ),are
R1548 T1960 T1972 prep In,induced
R1550 T1961 T1960 pobj contrast,In
R1551 T1962 T1961 prep to,contrast
R1553 T1963 T1964 amod other,IRFs
R1554 T1964 T1962 pobj IRFs,to
R1555 T1965 T1964 punct ",",IRFs
R1556 T1966 T1972 nsubjpass expression,induced
R1557 T1967 T1966 prep of,expression
R1558 T1968 T1967 pobj IRF-4,of
R1560 T1969 T1972 aux can,induced
R1562 T1970 T1972 neg not,induced
R1564 T1971 T1972 auxpass be,induced
R1565 T1972 T1972 ROOT induced,induced
R1566 T1973 T1972 agent by,induced
R1568 T1974 T1973 pobj IFNs,by
R1569 T1975 T1972 punct ",",induced
R1570 T1976 T1972 cc but,induced
R1572 T1977 T1972 conj by,induced
R1573 T1978 T1979 compound antigen,stimulation
R1575 T1979 T1977 pobj stimulation,by
R1576 T1980 T1972 punct ",",induced
R1578 T1981 T1972 conj crosslinking,induced
R1579 T1982 T1981 prep of,crosslinking
R1580 T1983 T1982 punct T,of
R1583 T1984 T1983 punct -,T
R1584 T1985 T1981 cc or,crosslinking
R1585 T1986 T1987 compound B-cell,receptors
R1586 T1987 T1981 conj receptors,crosslinking
R1587 T1988 T1987 cc or,receptors
R1588 T1989 T1987 conj phorbol-myristate-acetate,receptors
R1637 T1947 T1952 nsubj B,are
R1640 T1948 T1947 punct -,B
R1643 T1949 T1947 cc and,B
R1647 T1950 T1951 amod activated,T-lymphocytes
R1651 T1951 T1947 conj T-lymphocytes,B
R1653 T1952 T1952 ROOT are,are
R1659 T1953 T1954 amod IRF-4,positive
R1663 T1954 T1952 acomp positive,are

GO-BP

Id Subject Object Predicate Lexical cue
T1086 19-42 http://purl.obolibrary.org/obo/GO_0050798 denotes activated T-lymphocytes
T1087 19-42 http://purl.obolibrary.org/obo/GO_0051132 denotes activated T-lymphocytes
T1088 19-42 http://purl.obolibrary.org/obo/GO_0042110 denotes activated T-lymphocytes
T1089 19-42 http://purl.obolibrary.org/obo/GO_0050863 denotes activated T-lymphocytes
T1090 194-210 http://purl.obolibrary.org/obo/GO_0002452 denotes B-cell receptors

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2595 47-52 Protein denotes IRF-4
T2601 53-61 Gene_expression denotes positive
T2602 91-95 Protein denotes IRFs
T2603 111-116 Protein denotes IRF-4
T2604 138-142 Protein denotes IFNs
T2605 97-107 Gene_expression denotes expression
T2606 127-134 Positive_regulation denotes induced
R2063 T2595 T2601 themeOf IRF-4,positive
R2065 T2603 T2605 themeOf IRF-4,expression
R2069 T2604 T2606 causeOf IFNs,induced
R2070 T2605 T2606 themeOf expression,induced

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T1022 47-52 Protein denotes IRF-4
T1023 53-61 Gene_expression denotes positive
T1024 97-107 Gene_expression denotes expression
T1025 111-116 Protein denotes IRF-4
T1026 127-134 Positive_regulation denotes induced true
R759 T1022 T1023 themeOf IRF-4,positive
R760 T1024 T1026 themeOf expression,induced
R761 T1025 T1024 themeOf IRF-4,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1695 47-52 Q15306 denotes IRF-4
T1696 111-116 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue Negation
T970 47-52 Protein denotes IRF-4 true
T971 53-61 Gene_expression denotes positive
T972 97-107 Gene_expression denotes expression
T973 111-116 Protein denotes IRF-4
T974 127-134 Positive_regulation denotes induced
R732 T970 T971 themeOf IRF-4,positive
R733 T972 T974 themeOf expression,induced
R734 T973 T972 themeOf IRF-4,expression