PMC:1310901 / 29-247
Annnotations
bionlp-st-ge-2016-reference-eval
{"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T870","span":{"begin":26,"end":36},"obj":"Gene_expression"},{"id":"T871","span":{"begin":140,"end":143},"obj":"Protein"},{"id":"T872","span":{"begin":144,"end":147},"obj":"Protein"}],"text":" regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in"}
events-check-again
{"project":"events-check-again","denotations":[{"id":"T806","span":{"begin":26,"end":36},"obj":"Gene_expression"},{"id":"T807","span":{"begin":140,"end":143},"obj":"Protein"},{"id":"T808","span":{"begin":144,"end":147},"obj":"Protein"}],"text":" regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in"}
GO-CC
{"project":"GO-CC","denotations":[{"id":"T698","span":{"begin":49,"end":54},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":" regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in"}
sentences
{"project":"sentences","denotations":[{"id":"T2","span":{"begin":118,"end":126},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":" regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in"}
pmc-enju-pas
{"project":"pmc-enju-pas","denotations":[{"id":"T132","span":{"begin":1,"end":11},"obj":"JJ"},{"id":"T133","span":{"begin":12,"end":18},"obj":"NN"},{"id":"T134","span":{"begin":19,"end":20},"obj":"CD"},{"id":"T135","span":{"begin":21,"end":25},"obj":"NN"},{"id":"T136","span":{"begin":26,"end":36},"obj":"NN"},{"id":"T137","span":{"begin":37,"end":39},"obj":"IN"},{"id":"T138","span":{"begin":40,"end":48},"obj":"JJ"},{"id":"T139","span":{"begin":49,"end":54},"obj":"NN"},{"id":"T140","span":{"begin":55,"end":58},"obj":"JJ"},{"id":"T141","span":{"begin":59,"end":61},"obj":"TO"},{"id":"T142","span":{"begin":62,"end":78},"obj":"NN"},{"id":"T143","span":{"begin":79,"end":81},"obj":"IN"},{"id":"T144","span":{"begin":82,"end":85},"obj":"NN"},{"id":"T145","span":{"begin":86,"end":92},"obj":"NN"},{"id":"T146","span":{"begin":93,"end":95},"obj":"IN"},{"id":"T147","span":{"begin":96,"end":99},"obj":"DT"},{"id":"T148","span":{"begin":100,"end":108},"obj":"NN"},{"id":"T149","span":{"begin":109,"end":115},"obj":"NN"},{"id":"T150","span":{"begin":127,"end":135},"obj":"IN"},{"id":"T151","span":{"begin":136,"end":139},"obj":"DT"},{"id":"T152","span":{"begin":140,"end":147},"obj":"NN"},{"id":"T153","span":{"begin":148,"end":161},"obj":"NN"},{"id":"T154","span":{"begin":162,"end":165},"obj":"VB"},{"id":"T155","span":{"begin":166,"end":170},"obj":"VB"},{"id":"T156","span":{"begin":171,"end":176},"obj":"VB"},{"id":"T157","span":{"begin":177,"end":179},"obj":"TO"},{"id":"T158","span":{"begin":180,"end":182},"obj":"VB"},{"id":"T159","span":{"begin":183,"end":186},"obj":"DT"},{"id":"T160","span":{"begin":187,"end":196},"obj":"JJ"},{"id":"T161","span":{"begin":197,"end":204},"obj":"JJ"},{"id":"T162","span":{"begin":205,"end":215},"obj":"NN"},{"id":"T163","span":{"begin":216,"end":218},"obj":"IN"}],"relations":[{"id":"R45","pred":"arg1Of","subj":"T136","obj":"T132"},{"id":"R46","pred":"arg1Of","subj":"T136","obj":"T133"},{"id":"R47","pred":"arg1Of","subj":"T136","obj":"T134"},{"id":"R48","pred":"arg1Of","subj":"T136","obj":"T135"},{"id":"R49","pred":"arg2Of","subj":"T139","obj":"T137"},{"id":"R50","pred":"arg1Of","subj":"T139","obj":"T138"},{"id":"R51","pred":"arg1Of","subj":"T139","obj":"T140"},{"id":"R52","pred":"arg1Of","subj":"T140","obj":"T141"},{"id":"R53","pred":"arg2Of","subj":"T142","obj":"T141"},{"id":"R54","pred":"arg1Of","subj":"T142","obj":"T143"},{"id":"R55","pred":"arg2Of","subj":"T145","obj":"T143"},{"id":"R56","pred":"arg1Of","subj":"T145","obj":"T144"},{"id":"R57","pred":"arg1Of","subj":"T145","obj":"T146"},{"id":"R58","pred":"arg2Of","subj":"T149","obj":"T146"},{"id":"R59","pred":"arg1Of","subj":"T149","obj":"T147"},{"id":"R60","pred":"arg1Of","subj":"T149","obj":"T148"},{"id":"R61","pred":"arg1Of","subj":"T153","obj":"T151"},{"id":"R62","pred":"arg1Of","subj":"T153","obj":"T152"},{"id":"R63","pred":"arg1Of","subj":"T153","obj":"T154"},{"id":"R64","pred":"arg1Of","subj":"T153","obj":"T155"},{"id":"R65","pred":"arg2Of","subj":"T153","obj":"T156"},{"id":"R66","pred":"arg1Of","subj":"T153","obj":"T158"},{"id":"R67","pred":"arg2Of","subj":"T156","obj":"T150"},{"id":"R68","pred":"arg2Of","subj":"T156","obj":"T154"},{"id":"R69","pred":"arg2Of","subj":"T156","obj":"T155"},{"id":"R70","pred":"arg3Of","subj":"T158","obj":"T156"},{"id":"R71","pred":"arg1Of","subj":"T158","obj":"T157"},{"id":"R72","pred":"arg1Of","subj":"T158","obj":"T163"},{"id":"R73","pred":"arg2Of","subj":"T162","obj":"T158"},{"id":"R74","pred":"arg1Of","subj":"T162","obj":"T159"},{"id":"R75","pred":"arg1Of","subj":"T162","obj":"T160"},{"id":"R76","pred":"arg1Of","subj":"T162","obj":"T161"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":" regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in"}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T423","span":{"begin":1,"end":11},"obj":"JJ"},{"id":"T424","span":{"begin":12,"end":18},"obj":"NN"},{"id":"T425","span":{"begin":19,"end":20},"obj":"CD"},{"id":"T426","span":{"begin":21,"end":25},"obj":"NN"},{"id":"T427","span":{"begin":26,"end":36},"obj":"NN"},{"id":"T428","span":{"begin":37,"end":39},"obj":"IN"},{"id":"T429","span":{"begin":40,"end":48},"obj":"JJ"},{"id":"T430","span":{"begin":49,"end":54},"obj":"NNS"},{"id":"T431","span":{"begin":55,"end":58},"obj":"JJ"},{"id":"T432","span":{"begin":59,"end":61},"obj":"TO"},{"id":"T433","span":{"begin":62,"end":78},"obj":"NN"},{"id":"T434","span":{"begin":79,"end":81},"obj":"IN"},{"id":"T435","span":{"begin":82,"end":85},"obj":"NNP"},{"id":"T436","span":{"begin":86,"end":92},"obj":"NNS"},{"id":"T437","span":{"begin":93,"end":95},"obj":"IN"},{"id":"T438","span":{"begin":96,"end":99},"obj":"DT"},{"id":"T439","span":{"begin":100,"end":108},"obj":"NN"},{"id":"T440","span":{"begin":109,"end":115},"obj":"NN"},{"id":"T441","span":{"begin":127,"end":135},"obj":"IN"},{"id":"T442","span":{"begin":136,"end":139},"obj":"DT"},{"id":"T443","span":{"begin":140,"end":147},"obj":"JJ"},{"id":"T444","span":{"begin":148,"end":161},"obj":"NN"},{"id":"T445","span":{"begin":162,"end":165},"obj":"VBZ"},{"id":"T446","span":{"begin":166,"end":170},"obj":"VBN"},{"id":"T447","span":{"begin":171,"end":176},"obj":"VBN"},{"id":"T448","span":{"begin":177,"end":179},"obj":"TO"},{"id":"T449","span":{"begin":180,"end":182},"obj":"VB"},{"id":"T450","span":{"begin":183,"end":186},"obj":"DT"},{"id":"T451","span":{"begin":187,"end":196},"obj":"JJ"},{"id":"T452","span":{"begin":197,"end":204},"obj":"JJ"},{"id":"T453","span":{"begin":205,"end":215},"obj":"NN"},{"id":"T454","span":{"begin":216,"end":218},"obj":"IN"}],"relations":[{"id":"R343","pred":"prep","subj":"T454","obj":"T453"},{"id":"R326","pred":"prep","subj":"T437","obj":"T433"},{"id":"R327","pred":"det","subj":"T438","obj":"T440"},{"id":"R328","pred":"compound","subj":"T439","obj":"T440"},{"id":"R329","pred":"pobj","subj":"T440","obj":"T437"},{"id":"R330","pred":"mark","subj":"T441","obj":"T447"},{"id":"R331","pred":"det","subj":"T442","obj":"T444"},{"id":"R332","pred":"amod","subj":"T443","obj":"T444"},{"id":"R333","pred":"nsubjpass","subj":"T444","obj":"T447"},{"id":"R334","pred":"aux","subj":"T445","obj":"T447"},{"id":"R335","pred":"auxpass","subj":"T446","obj":"T447"},{"id":"R337","pred":"aux","subj":"T448","obj":"T449"},{"id":"R338","pred":"xcomp","subj":"T449","obj":"T447"},{"id":"R339","pred":"det","subj":"T450","obj":"T453"},{"id":"R340","pred":"amod","subj":"T451","obj":"T453"},{"id":"R341","pred":"amod","subj":"T452","obj":"T453"},{"id":"R342","pred":"attr","subj":"T453","obj":"T449"},{"id":"R318","pred":"amod","subj":"T429","obj":"T430"},{"id":"R319","pred":"pobj","subj":"T430","obj":"T428"},{"id":"R321","pred":"pcomp","subj":"T432","obj":"T431"},{"id":"R322","pred":"pobj","subj":"T433","obj":"T432"},{"id":"R323","pred":"prep","subj":"T434","obj":"T433"},{"id":"R324","pred":"compound","subj":"T435","obj":"T436"},{"id":"R325","pred":"pobj","subj":"T436","obj":"T434"},{"id":"R312","pred":"amod","subj":"T423","obj":"T424"},{"id":"R314","pred":"nummod","subj":"T425","obj":"T427"},{"id":"R315","pred":"compound","subj":"T426","obj":"T427"},{"id":"R317","pred":"prep","subj":"T428","obj":"T427"}],"text":" regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in"}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T117","span":{"begin":21,"end":36},"obj":"http://purl.obolibrary.org/obo/GO_0010467"}],"text":" regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in"}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T839","span":{"begin":26,"end":36},"obj":"Gene_expression"},{"id":"T841","span":{"begin":140,"end":143},"obj":"Protein"},{"id":"T842","span":{"begin":144,"end":147},"obj":"Protein"}],"text":" regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in"}
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T73","span":{"begin":26,"end":36},"obj":"Gene_expression"},{"id":"T74","span":{"begin":140,"end":143},"obj":"Protein"},{"id":"T75","span":{"begin":144,"end":147},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":" regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in"}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T393","span":{"begin":140,"end":143},"obj":"P11274"},{"id":"T394","span":{"begin":144,"end":147},"obj":"P00519"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":" regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in"}
test2
{"project":"test2","denotations":[{"id":"T37","span":{"begin":26,"end":36},"obj":"Gene_expression"},{"id":"T38","span":{"begin":140,"end":143},"obj":"Protein"},{"id":"T39","span":{"begin":144,"end":147},"obj":"Protein"},{"id":"T40","span":{"begin":148,"end":161},"obj":"Localization"}],"relations":[{"id":"R21","pred":"themeOf","subj":"T38","obj":"T40"}],"attributes":[{"id":"M6","pred":"Negation","subj":"T37","obj":"true"},{"id":"M7","pred":"Speculation","subj":"T38","obj":"true"}],"text":" regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in"}