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PMC:1310901 / 29-247 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T870 26-36 Gene_expression denotes expression
T871 140-143 Protein denotes bcr
T872 144-147 Protein denotes abl

events-check-again

Id Subject Object Predicate Lexical cue
T806 26-36 Gene_expression denotes expression
T807 140-143 Protein denotes bcr
T808 144-147 Protein denotes abl

GO-CC

Id Subject Object Predicate Lexical cue
T698 49-54 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2 118-126 Sentence denotes Abstract

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T132 1-11 JJ denotes regulatory
T133 12-18 NN denotes factor
T134 19-20 CD denotes 4
T135 21-25 NN denotes gene
T136 26-36 NN denotes expression
T137 37-39 IN denotes in
T138 40-48 JJ denotes leukemic
T139 49-54 NN denotes cells
T140 55-58 JJ denotes due
T141 59-61 TO denotes to
T142 62-78 NN denotes hypermethylation
T143 79-81 IN denotes of
T144 82-85 NN denotes CpG
T145 86-92 NN denotes motifs
T146 93-95 IN denotes in
T147 96-99 DT denotes the
T148 100-108 NN denotes promoter
T149 109-115 NN denotes region
T150 127-135 IN denotes Although
T151 136-139 DT denotes the
T152 140-147 NN denotes bcr-abl
T153 148-161 NN denotes translocation
T154 162-165 VB denotes has
T155 166-170 VB denotes been
T156 171-176 VB denotes shown
T157 177-179 TO denotes to
T158 180-182 VB denotes be
T159 183-186 DT denotes the
T160 187-196 JJ denotes causative
T161 197-204 JJ denotes genetic
T162 205-215 NN denotes aberration
T163 216-218 IN denotes in
R45 T136 T132 arg1Of expression,regulatory
R46 T136 T133 arg1Of expression,factor
R47 T136 T134 arg1Of expression,4
R48 T136 T135 arg1Of expression,gene
R49 T139 T137 arg2Of cells,in
R50 T139 T138 arg1Of cells,leukemic
R51 T139 T140 arg1Of cells,due
R52 T140 T141 arg1Of due,to
R53 T142 T141 arg2Of hypermethylation,to
R54 T142 T143 arg1Of hypermethylation,of
R55 T145 T143 arg2Of motifs,of
R56 T145 T144 arg1Of motifs,CpG
R57 T145 T146 arg1Of motifs,in
R58 T149 T146 arg2Of region,in
R59 T149 T147 arg1Of region,the
R60 T149 T148 arg1Of region,promoter
R61 T153 T151 arg1Of translocation,the
R62 T153 T152 arg1Of translocation,bcr-abl
R63 T153 T154 arg1Of translocation,has
R64 T153 T155 arg1Of translocation,been
R65 T153 T156 arg2Of translocation,shown
R66 T153 T158 arg1Of translocation,be
R67 T156 T150 arg2Of shown,Although
R68 T156 T154 arg2Of shown,has
R69 T156 T155 arg2Of shown,been
R70 T158 T156 arg3Of be,shown
R71 T158 T157 arg1Of be,to
R72 T158 T163 arg1Of be,in
R73 T162 T158 arg2Of aberration,be
R74 T162 T159 arg1Of aberration,the
R75 T162 T160 arg1Of aberration,causative
R76 T162 T161 arg1Of aberration,genetic

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T423 1-11 JJ denotes regulatory
T424 12-18 NN denotes factor
T425 19-20 CD denotes 4
T426 21-25 NN denotes gene
T427 26-36 NN denotes expression
T428 37-39 IN denotes in
T429 40-48 JJ denotes leukemic
T430 49-54 NNS denotes cells
T431 55-58 JJ denotes due
T432 59-61 TO denotes to
T433 62-78 NN denotes hypermethylation
T434 79-81 IN denotes of
T435 82-85 NNP denotes CpG
T436 86-92 NNS denotes motifs
T437 93-95 IN denotes in
T438 96-99 DT denotes the
T439 100-108 NN denotes promoter
T440 109-115 NN denotes region
T441 127-135 IN denotes Although
T442 136-139 DT denotes the
T443 140-147 JJ denotes bcr-abl
T444 148-161 NN denotes translocation
T445 162-165 VBZ denotes has
T446 166-170 VBN denotes been
T447 171-176 VBN denotes shown
T448 177-179 TO denotes to
T449 180-182 VB denotes be
T450 183-186 DT denotes the
T451 187-196 JJ denotes causative
T452 197-204 JJ denotes genetic
T453 205-215 NN denotes aberration
T454 216-218 IN denotes in
R343 T454 T453 prep in,aberration
R326 T437 T433 prep in,hypermethylation
R327 T438 T440 det the,region
R328 T439 T440 compound promoter,region
R329 T440 T437 pobj region,in
R330 T441 T447 mark Although,shown
R331 T442 T444 det the,translocation
R332 T443 T444 amod bcr-abl,translocation
R333 T444 T447 nsubjpass translocation,shown
R334 T445 T447 aux has,shown
R335 T446 T447 auxpass been,shown
R337 T448 T449 aux to,be
R338 T449 T447 xcomp be,shown
R339 T450 T453 det the,aberration
R340 T451 T453 amod causative,aberration
R341 T452 T453 amod genetic,aberration
R342 T453 T449 attr aberration,be
R318 T429 T430 amod leukemic,cells
R319 T430 T428 pobj cells,in
R321 T432 T431 pcomp to,due
R322 T433 T432 pobj hypermethylation,to
R323 T434 T433 prep of,hypermethylation
R324 T435 T436 compound CpG,motifs
R325 T436 T434 pobj motifs,of
R312 T423 T424 amod regulatory,factor
R314 T425 T427 nummod 4,expression
R315 T426 T427 compound gene,expression
R317 T428 T427 prep in,expression

GO-BP

Id Subject Object Predicate Lexical cue
T117 21-36 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T839 26-36 Gene_expression denotes expression
T841 140-143 Protein denotes bcr
T842 144-147 Protein denotes abl

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T73 26-36 Gene_expression denotes expression
T74 140-143 Protein denotes bcr
T75 144-147 Protein denotes abl

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T393 140-143 P11274 denotes bcr
T394 144-147 P00519 denotes abl

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T37 26-36 Gene_expression denotes expression true
T38 140-143 Protein denotes bcr true
T39 144-147 Protein denotes abl
T40 148-161 Localization denotes translocation
R21 T38 T40 themeOf bcr,translocation