PMC:1310901 / 22598-22787 JSONTXT

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    bionlp-st-ge-2016-reference-eval

    {"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T14442","span":{"begin":32,"end":38},"obj":"Regulation"},{"id":"T14443","span":{"begin":117,"end":123},"obj":"Regulation"},{"id":"T14444","span":{"begin":117,"end":123},"obj":"Regulation"},{"id":"T14572","span":{"begin":58,"end":92},"obj":"Entity"},{"id":"T14573","span":{"begin":128,"end":145},"obj":"Entity"},{"id":"T14575","span":{"begin":149,"end":169},"obj":"Entity"}],"relations":[{"id":"R11988","pred":"themeOf","subj":"T14572","obj":"T14442"},{"id":"R11991","pred":"themeOf","subj":"T14573","obj":"T14444"},{"id":"R11995","pred":"themeOf","subj":"T14575","obj":"T14443"}],"text":"All three substitutions did not change any known putative transcription factor binding sites (30,31) and also do not affect any restriction sites or primer binding sites of the used assays."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T14190","span":{"begin":32,"end":38},"obj":"Regulation"},{"id":"T14191","span":{"begin":58,"end":92},"obj":"Entity"},{"id":"T14192","span":{"begin":117,"end":123},"obj":"Regulation"},{"id":"T14193","span":{"begin":117,"end":123},"obj":"Regulation"},{"id":"T14194","span":{"begin":128,"end":145},"obj":"Entity"},{"id":"T14195","span":{"begin":149,"end":169},"obj":"Entity"}],"relations":[{"id":"R11772","pred":"themeOf","subj":"T14191","obj":"T14190"},{"id":"R11775","pred":"themeOf","subj":"T14194","obj":"T14192"},{"id":"R11777","pred":"themeOf","subj":"T14195","obj":"T14193"}],"attributes":[{"id":"M348","pred":"Negation","subj":"T14192","obj":"true"},{"id":"M347","pred":"Negation","subj":"T14190","obj":"true"},{"id":"M349","pred":"Negation","subj":"T14193","obj":"true"}],"text":"All three substitutions did not change any known putative transcription factor binding sites (30,31) and also do not affect any restriction sites or primer binding sites of the used assays."}

    sentences

    {"project":"sentences","denotations":[{"id":"T11283","span":{"begin":0,"end":189},"obj":"Sentence"},{"id":"T159","span":{"begin":0,"end":189},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"All three substitutions did not change any known putative transcription factor binding sites (30,31) and also do not affect any restriction sites or primer binding sites of the used assays."}

    2_test

    {"project":"2_test","denotations":[{"id":"16396836-8921401-76538201","span":{"begin":94,"end":96},"obj":"8921401"},{"id":"16396836-12218129-76538202","span":{"begin":97,"end":99},"obj":"12218129"}],"text":"All three substitutions did not change any known putative transcription factor binding sites (30,31) and also do not affect any restriction sites or primer binding sites of the used assays."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T11492","span":{"begin":0,"end":3},"obj":"DT"},{"id":"T11493","span":{"begin":4,"end":9},"obj":"CD"},{"id":"T11494","span":{"begin":10,"end":23},"obj":"NN"},{"id":"T11495","span":{"begin":24,"end":27},"obj":"VB"},{"id":"T11496","span":{"begin":28,"end":31},"obj":"RB"},{"id":"T11497","span":{"begin":32,"end":38},"obj":"VB"},{"id":"T11498","span":{"begin":39,"end":42},"obj":"DT"},{"id":"T11499","span":{"begin":43,"end":48},"obj":"JJ"},{"id":"T11500","span":{"begin":49,"end":57},"obj":"JJ"},{"id":"T11501","span":{"begin":58,"end":71},"obj":"NN"},{"id":"T11502","span":{"begin":72,"end":78},"obj":"NN"},{"id":"T11503","span":{"begin":79,"end":86},"obj":"NN"},{"id":"T11504","span":{"begin":87,"end":92},"obj":"NN"},{"id":"T11505","span":{"begin":93,"end":94},"obj":"-LRB-"},{"id":"T11506","span":{"begin":94,"end":99},"obj":"CD"},{"id":"T11507","span":{"begin":99,"end":100},"obj":"-RRB-"},{"id":"T11508","span":{"begin":101,"end":104},"obj":"CC"},{"id":"T11509","span":{"begin":105,"end":109},"obj":"RB"},{"id":"T11510","span":{"begin":110,"end":112},"obj":"VB"},{"id":"T11511","span":{"begin":113,"end":116},"obj":"RB"},{"id":"T11512","span":{"begin":117,"end":123},"obj":"VB"},{"id":"T11513","span":{"begin":124,"end":127},"obj":"DT"},{"id":"T11514","span":{"begin":128,"end":139},"obj":"NN"},{"id":"T11515","span":{"begin":140,"end":145},"obj":"NN"},{"id":"T11516","span":{"begin":146,"end":148},"obj":"CC"},{"id":"T11517","span":{"begin":149,"end":155},"obj":"NN"},{"id":"T11518","span":{"begin":156,"end":163},"obj":"NN"},{"id":"T11519","span":{"begin":164,"end":169},"obj":"NN"},{"id":"T11520","span":{"begin":170,"end":172},"obj":"IN"},{"id":"T11521","span":{"begin":173,"end":176},"obj":"DT"},{"id":"T11522","span":{"begin":177,"end":181},"obj":"VB"},{"id":"T11523","span":{"begin":182,"end":188},"obj":"NN"}],"relations":[{"id":"R9376","pred":"arg1Of","subj":"T11494","obj":"T11492"},{"id":"R9377","pred":"arg1Of","subj":"T11494","obj":"T11493"},{"id":"R9378","pred":"arg1Of","subj":"T11494","obj":"T11495"},{"id":"R9379","pred":"arg1Of","subj":"T11494","obj":"T11497"},{"id":"R9380","pred":"arg1Of","subj":"T11494","obj":"T11510"},{"id":"R9381","pred":"arg1Of","subj":"T11494","obj":"T11512"},{"id":"R9382","pred":"arg2Of","subj":"T11497","obj":"T11495"},{"id":"R9383","pred":"arg1Of","subj":"T11497","obj":"T11496"},{"id":"R9384","pred":"arg1Of","subj":"T11497","obj":"T11508"},{"id":"R9385","pred":"arg2Of","subj":"T11504","obj":"T11497"},{"id":"R9386","pred":"arg1Of","subj":"T11504","obj":"T11498"},{"id":"R9387","pred":"arg1Of","subj":"T11504","obj":"T11499"},{"id":"R9388","pred":"arg1Of","subj":"T11504","obj":"T11500"},{"id":"R9389","pred":"arg1Of","subj":"T11504","obj":"T11501"},{"id":"R9390","pred":"arg1Of","subj":"T11504","obj":"T11502"},{"id":"R9391","pred":"arg1Of","subj":"T11504","obj":"T11503"},{"id":"R9392","pred":"arg1Of","subj":"T11504","obj":"T11505"},{"id":"R9393","pred":"arg2Of","subj":"T11506","obj":"T11505"},{"id":"R9394","pred":"arg3Of","subj":"T11507","obj":"T11505"},{"id":"R9395","pred":"arg2Of","subj":"T11512","obj":"T11508"},{"id":"R9396","pred":"arg1Of","subj":"T11512","obj":"T11509"},{"id":"R9397","pred":"arg2Of","subj":"T11512","obj":"T11510"},{"id":"R9398","pred":"arg1Of","subj":"T11512","obj":"T11511"},{"id":"R9399","pred":"arg1Of","subj":"T11515","obj":"T11514"},{"id":"R9400","pred":"arg1Of","subj":"T11515","obj":"T11516"},{"id":"R9401","pred":"arg2Of","subj":"T11516","obj":"T11512"},{"id":"R9402","pred":"arg1Of","subj":"T11516","obj":"T11513"},{"id":"R9403","pred":"arg1Of","subj":"T11516","obj":"T11520"},{"id":"R9404","pred":"arg2Of","subj":"T11519","obj":"T11516"},{"id":"R9405","pred":"arg1Of","subj":"T11519","obj":"T11517"},{"id":"R9406","pred":"arg1Of","subj":"T11519","obj":"T11518"},{"id":"R9407","pred":"arg2Of","subj":"T11523","obj":"T11520"},{"id":"R9408","pred":"arg1Of","subj":"T11523","obj":"T11521"},{"id":"R9409","pred":"arg2Of","subj":"T11523","obj":"T11522"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"All three substitutions did not change any known putative transcription factor binding sites (30,31) and also do not affect any restriction sites or primer binding sites of the used assays."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T12692","span":{"begin":0,"end":3},"obj":"DT"},{"id":"T12693","span":{"begin":4,"end":9},"obj":"CD"},{"id":"T12694","span":{"begin":10,"end":23},"obj":"NNS"},{"id":"T12695","span":{"begin":24,"end":27},"obj":"VBD"},{"id":"T12696","span":{"begin":28,"end":31},"obj":"RB"},{"id":"T12697","span":{"begin":32,"end":38},"obj":"VB"},{"id":"T12698","span":{"begin":39,"end":42},"obj":"DT"},{"id":"T12699","span":{"begin":43,"end":48},"obj":"JJ"},{"id":"T12700","span":{"begin":49,"end":57},"obj":"JJ"},{"id":"T12701","span":{"begin":58,"end":71},"obj":"NN"},{"id":"T12702","span":{"begin":72,"end":78},"obj":"NN"},{"id":"T12703","span":{"begin":79,"end":86},"obj":"JJ"},{"id":"T12704","span":{"begin":87,"end":92},"obj":"NNS"},{"id":"T12705","span":{"begin":93,"end":94},"obj":"-LRB-"},{"id":"T12706","span":{"begin":94,"end":99},"obj":"CD"},{"id":"T12707","span":{"begin":99,"end":100},"obj":"-RRB-"},{"id":"T12708","span":{"begin":101,"end":104},"obj":"CC"},{"id":"T12709","span":{"begin":105,"end":109},"obj":"RB"},{"id":"T12710","span":{"begin":110,"end":112},"obj":"VBP"},{"id":"T12711","span":{"begin":113,"end":116},"obj":"RB"},{"id":"T12712","span":{"begin":117,"end":123},"obj":"VB"},{"id":"T12713","span":{"begin":124,"end":127},"obj":"DT"},{"id":"T12714","span":{"begin":128,"end":139},"obj":"NN"},{"id":"T12715","span":{"begin":140,"end":145},"obj":"NNS"},{"id":"T12716","span":{"begin":146,"end":148},"obj":"CC"},{"id":"T12717","span":{"begin":149,"end":155},"obj":"JJR"},{"id":"T12718","span":{"begin":156,"end":163},"obj":"JJ"},{"id":"T12719","span":{"begin":164,"end":169},"obj":"NNS"},{"id":"T12720","span":{"begin":170,"end":172},"obj":"IN"},{"id":"T12721","span":{"begin":173,"end":176},"obj":"DT"},{"id":"T12722","span":{"begin":177,"end":181},"obj":"VBN"},{"id":"T12723","span":{"begin":182,"end":188},"obj":"NNS"},{"id":"T12724","span":{"begin":188,"end":189},"obj":"."}],"relations":[{"id":"R10514","pred":"det","subj":"T12692","obj":"T12694"},{"id":"R10515","pred":"nummod","subj":"T12693","obj":"T12694"},{"id":"R10516","pred":"nsubj","subj":"T12694","obj":"T12697"},{"id":"R10517","pred":"aux","subj":"T12695","obj":"T12697"},{"id":"R10518","pred":"neg","subj":"T12696","obj":"T12697"},{"id":"R10519","pred":"ROOT","subj":"T12697","obj":"T12697"},{"id":"R10520","pred":"det","subj":"T12698","obj":"T12702"},{"id":"R10521","pred":"amod","subj":"T12699","obj":"T12702"},{"id":"R10522","pred":"amod","subj":"T12700","obj":"T12702"},{"id":"R10523","pred":"compound","subj":"T12701","obj":"T12702"},{"id":"R10524","pred":"dobj","subj":"T12702","obj":"T12697"},{"id":"R10525","pred":"amod","subj":"T12703","obj":"T12704"},{"id":"R10526","pred":"dobj","subj":"T12704","obj":"T12697"},{"id":"R10527","pred":"punct","subj":"T12705","obj":"T12704"},{"id":"R10528","pred":"appos","subj":"T12706","obj":"T12704"},{"id":"R10529","pred":"punct","subj":"T12707","obj":"T12704"},{"id":"R10530","pred":"cc","subj":"T12708","obj":"T12697"},{"id":"R10531","pred":"advmod","subj":"T12709","obj":"T12712"},{"id":"R10532","pred":"aux","subj":"T12710","obj":"T12712"},{"id":"R10533","pred":"neg","subj":"T12711","obj":"T12712"},{"id":"R10534","pred":"conj","subj":"T12712","obj":"T12697"},{"id":"R10535","pred":"det","subj":"T12713","obj":"T12715"},{"id":"R10536","pred":"compound","subj":"T12714","obj":"T12715"},{"id":"R10537","pred":"dobj","subj":"T12715","obj":"T12712"},{"id":"R10538","pred":"cc","subj":"T12716","obj":"T12715"},{"id":"R10539","pred":"amod","subj":"T12717","obj":"T12719"},{"id":"R10540","pred":"amod","subj":"T12718","obj":"T12719"},{"id":"R10541","pred":"conj","subj":"T12719","obj":"T12715"},{"id":"R10542","pred":"prep","subj":"T12720","obj":"T12719"},{"id":"R10543","pred":"det","subj":"T12721","obj":"T12723"},{"id":"R10544","pred":"amod","subj":"T12722","obj":"T12723"},{"id":"R10545","pred":"pobj","subj":"T12723","obj":"T12720"},{"id":"R10546","pred":"punct","subj":"T12724","obj":"T12697"}],"text":"All three substitutions did not change any known putative transcription factor binding sites (30,31) and also do not affect any restriction sites or primer binding sites of the used assays."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T11334","span":{"begin":58,"end":71},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"All three substitutions did not change any known putative transcription factor binding sites (30,31) and also do not affect any restriction sites or primer binding sites of the used assays."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T13724","span":{"begin":58,"end":86},"obj":"http://purl.obolibrary.org/obo/GO_0033613"},{"id":"T13725","span":{"begin":58,"end":86},"obj":"http://purl.obolibrary.org/obo/GO_0008134"},{"id":"T13726","span":{"begin":58,"end":86},"obj":"http://purl.obolibrary.org/obo/GO_0043425"},{"id":"T13727","span":{"begin":58,"end":86},"obj":"http://purl.obolibrary.org/obo/GO_0070491"},{"id":"T13728","span":{"begin":79,"end":86},"obj":"http://purl.obolibrary.org/obo/GO_0005488"},{"id":"T13729","span":{"begin":156,"end":163},"obj":"http://purl.obolibrary.org/obo/GO_0005488"}],"text":"All three substitutions did not change any known putative transcription factor binding sites (30,31) and also do not affect any restriction sites or primer binding sites of the used assays."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T11161","span":{"begin":149,"end":169},"obj":"Entity"},{"id":"T11156","span":{"begin":32,"end":38},"obj":"Regulation"},{"id":"T11157","span":{"begin":58,"end":92},"obj":"Entity"},{"id":"T11158","span":{"begin":117,"end":123},"obj":"Regulation"},{"id":"T11159","span":{"begin":117,"end":123},"obj":"Regulation"},{"id":"T11160","span":{"begin":128,"end":145},"obj":"Entity"}],"relations":[{"id":"R9149","pred":"themeOf","subj":"T11157","obj":"T11156"},{"id":"R9151","pred":"themeOf","subj":"T11160","obj":"T11158"},{"id":"R9153","pred":"themeOf","subj":"T11161","obj":"T11159"}],"attributes":[{"id":"M273","pred":"Negation","subj":"T11159","obj":"true"},{"id":"M271","pred":"Negation","subj":"T11156","obj":"true"},{"id":"M272","pred":"Negation","subj":"T11158","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"All three substitutions did not change any known putative transcription factor binding sites (30,31) and also do not affect any restriction sites or primer binding sites of the used assays."}

    test2

    {"project":"test2","denotations":[{"id":"T11027","span":{"begin":72,"end":92},"obj":"Entity"},{"id":"T11028","span":{"begin":156,"end":169},"obj":"Entity"}],"text":"All three substitutions did not change any known putative transcription factor binding sites (30,31) and also do not affect any restriction sites or primer binding sites of the used assays."}