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PMC:1310901 / 22598-22787 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T14442 32-38 Regulation denotes change
T14443 117-123 Regulation denotes affect
T14444 117-123 Regulation denotes affect
T14572 58-92 Entity denotes transcription factor binding sites
T14573 128-145 Entity denotes restriction sites
T14575 149-169 Entity denotes primer binding sites
R11988 T14572 T14442 themeOf transcription factor binding sites,change
R11991 T14573 T14444 themeOf restriction sites,affect
R11995 T14575 T14443 themeOf primer binding sites,affect

events-check-again

Id Subject Object Predicate Lexical cue Negation
T14190 32-38 Regulation denotes change true
T14191 58-92 Entity denotes transcription factor binding sites
T14192 117-123 Regulation denotes affect true
T14193 117-123 Regulation denotes affect true
T14194 128-145 Entity denotes restriction sites
T14195 149-169 Entity denotes primer binding sites
R11772 T14191 T14190 themeOf transcription factor binding sites,change
R11775 T14194 T14192 themeOf restriction sites,affect
R11777 T14195 T14193 themeOf primer binding sites,affect

sentences

Id Subject Object Predicate Lexical cue
T11283 0-189 Sentence denotes All three substitutions did not change any known putative transcription factor binding sites (30,31) and also do not affect any restriction sites or primer binding sites of the used assays.
T159 0-189 Sentence denotes All three substitutions did not change any known putative transcription factor binding sites (30,31) and also do not affect any restriction sites or primer binding sites of the used assays.

2_test

Id Subject Object Predicate Lexical cue
16396836-8921401-76538201 94-96 8921401 denotes 30
16396836-12218129-76538202 97-99 12218129 denotes 31

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11492 0-3 DT denotes All
T11493 4-9 CD denotes three
T11494 10-23 NN denotes substitutions
T11495 24-27 VB denotes did
T11496 28-31 RB denotes not
T11497 32-38 VB denotes change
T11498 39-42 DT denotes any
T11499 43-48 JJ denotes known
T11500 49-57 JJ denotes putative
T11501 58-71 NN denotes transcription
T11502 72-78 NN denotes factor
T11503 79-86 NN denotes binding
T11504 87-92 NN denotes sites
T11505 93-94 -LRB- denotes (
T11506 94-99 CD denotes 30,31
T11507 99-100 -RRB- denotes )
T11508 101-104 CC denotes and
T11509 105-109 RB denotes also
T11510 110-112 VB denotes do
T11511 113-116 RB denotes not
T11512 117-123 VB denotes affect
T11513 124-127 DT denotes any
T11514 128-139 NN denotes restriction
T11515 140-145 NN denotes sites
T11516 146-148 CC denotes or
T11517 149-155 NN denotes primer
T11518 156-163 NN denotes binding
T11519 164-169 NN denotes sites
T11520 170-172 IN denotes of
T11521 173-176 DT denotes the
T11522 177-181 VB denotes used
T11523 182-188 NN denotes assays
R9376 T11494 T11492 arg1Of substitutions,All
R9377 T11494 T11493 arg1Of substitutions,three
R9378 T11494 T11495 arg1Of substitutions,did
R9379 T11494 T11497 arg1Of substitutions,change
R9380 T11494 T11510 arg1Of substitutions,do
R9381 T11494 T11512 arg1Of substitutions,affect
R9382 T11497 T11495 arg2Of change,did
R9383 T11497 T11496 arg1Of change,not
R9384 T11497 T11508 arg1Of change,and
R9385 T11504 T11497 arg2Of sites,change
R9386 T11504 T11498 arg1Of sites,any
R9387 T11504 T11499 arg1Of sites,known
R9388 T11504 T11500 arg1Of sites,putative
R9389 T11504 T11501 arg1Of sites,transcription
R9390 T11504 T11502 arg1Of sites,factor
R9391 T11504 T11503 arg1Of sites,binding
R9392 T11504 T11505 arg1Of sites,(
R9393 T11506 T11505 arg2Of "30,31",(
R9394 T11507 T11505 arg3Of ),(
R9395 T11512 T11508 arg2Of affect,and
R9396 T11512 T11509 arg1Of affect,also
R9397 T11512 T11510 arg2Of affect,do
R9398 T11512 T11511 arg1Of affect,not
R9399 T11515 T11514 arg1Of sites,restriction
R9400 T11515 T11516 arg1Of sites,or
R9401 T11516 T11512 arg2Of or,affect
R9402 T11516 T11513 arg1Of or,any
R9403 T11516 T11520 arg1Of or,of
R9404 T11519 T11516 arg2Of sites,or
R9405 T11519 T11517 arg1Of sites,primer
R9406 T11519 T11518 arg1Of sites,binding
R9407 T11523 T11520 arg2Of assays,of
R9408 T11523 T11521 arg1Of assays,the
R9409 T11523 T11522 arg2Of assays,used

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T12692 0-3 DT denotes All
T12693 4-9 CD denotes three
T12694 10-23 NNS denotes substitutions
T12695 24-27 VBD denotes did
T12696 28-31 RB denotes not
T12697 32-38 VB denotes change
T12698 39-42 DT denotes any
T12699 43-48 JJ denotes known
T12700 49-57 JJ denotes putative
T12701 58-71 NN denotes transcription
T12702 72-78 NN denotes factor
T12703 79-86 JJ denotes binding
T12704 87-92 NNS denotes sites
T12705 93-94 -LRB- denotes (
T12706 94-99 CD denotes 30,31
T12707 99-100 -RRB- denotes )
T12708 101-104 CC denotes and
T12709 105-109 RB denotes also
T12710 110-112 VBP denotes do
T12711 113-116 RB denotes not
T12712 117-123 VB denotes affect
T12713 124-127 DT denotes any
T12714 128-139 NN denotes restriction
T12715 140-145 NNS denotes sites
T12716 146-148 CC denotes or
T12717 149-155 JJR denotes primer
T12718 156-163 JJ denotes binding
T12719 164-169 NNS denotes sites
T12720 170-172 IN denotes of
T12721 173-176 DT denotes the
T12722 177-181 VBN denotes used
T12723 182-188 NNS denotes assays
T12724 188-189 . denotes .
R10514 T12692 T12694 det All,substitutions
R10515 T12693 T12694 nummod three,substitutions
R10516 T12694 T12697 nsubj substitutions,change
R10517 T12695 T12697 aux did,change
R10518 T12696 T12697 neg not,change
R10519 T12697 T12697 ROOT change,change
R10520 T12698 T12702 det any,factor
R10521 T12699 T12702 amod known,factor
R10522 T12700 T12702 amod putative,factor
R10523 T12701 T12702 compound transcription,factor
R10524 T12702 T12697 dobj factor,change
R10525 T12703 T12704 amod binding,sites
R10526 T12704 T12697 dobj sites,change
R10527 T12705 T12704 punct (,sites
R10528 T12706 T12704 appos "30,31",sites
R10529 T12707 T12704 punct ),sites
R10530 T12708 T12697 cc and,change
R10531 T12709 T12712 advmod also,affect
R10532 T12710 T12712 aux do,affect
R10533 T12711 T12712 neg not,affect
R10534 T12712 T12697 conj affect,change
R10535 T12713 T12715 det any,sites
R10536 T12714 T12715 compound restriction,sites
R10537 T12715 T12712 dobj sites,affect
R10538 T12716 T12715 cc or,sites
R10539 T12717 T12719 amod primer,sites
R10540 T12718 T12719 amod binding,sites
R10541 T12719 T12715 conj sites,sites
R10542 T12720 T12719 prep of,sites
R10543 T12721 T12723 det the,assays
R10544 T12722 T12723 amod used,assays
R10545 T12723 T12720 pobj assays,of
R10546 T12724 T12697 punct .,change

GO-BP

Id Subject Object Predicate Lexical cue
T11334 58-71 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T13724 58-86 http://purl.obolibrary.org/obo/GO_0033613 denotes transcription factor binding
T13725 58-86 http://purl.obolibrary.org/obo/GO_0008134 denotes transcription factor binding
T13726 58-86 http://purl.obolibrary.org/obo/GO_0043425 denotes transcription factor binding
T13727 58-86 http://purl.obolibrary.org/obo/GO_0070491 denotes transcription factor binding
T13728 79-86 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T13729 156-163 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T11161 149-169 Entity denotes primer binding sites
T11156 32-38 Regulation denotes change true
T11157 58-92 Entity denotes transcription factor binding sites
T11158 117-123 Regulation denotes affect true
T11159 117-123 Regulation denotes affect true
T11160 128-145 Entity denotes restriction sites
R9149 T11157 T11156 themeOf transcription factor binding sites,change
R9151 T11160 T11158 themeOf restriction sites,affect
R9153 T11161 T11159 themeOf primer binding sites,affect

test2

Id Subject Object Predicate Lexical cue
T11027 72-92 Entity denotes factor binding sites
T11028 156-169 Entity denotes binding sites