PMC:1310901 / 16073-16312
Annnotations
bionlp-st-ge-2016-reference-eval
{"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T8464","span":{"begin":84,"end":94},"obj":"Gene_expression"},{"id":"T8471","span":{"begin":73,"end":78},"obj":"Protein"}],"relations":[{"id":"R7043","pred":"themeOf","subj":"T8471","obj":"T8464"}],"text":"To further investigate promoter methylation as a regulatory mechanism of IRF-4 gene expression, restriction-PCR-assays were performed (20,24), where only methylated DNA would not be cut enabling subsequent PCR amplification and vice versa."}
events-check-again
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sentences
{"project":"sentences","denotations":[{"id":"T7832","span":{"begin":0,"end":239},"obj":"Sentence"},{"id":"T121","span":{"begin":0,"end":239},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"To further investigate promoter methylation as a regulatory mechanism of IRF-4 gene expression, restriction-PCR-assays were performed (20,24), where only methylated DNA would not be cut enabling subsequent PCR amplification and vice versa."}
2_test
{"project":"2_test","denotations":[{"id":"16396836-7938018-76538195","span":{"begin":135,"end":137},"obj":"7938018"},{"id":"16396836-9389709-76538196","span":{"begin":138,"end":140},"obj":"9389709"}],"text":"To further investigate promoter methylation as a regulatory mechanism of IRF-4 gene expression, restriction-PCR-assays were performed (20,24), where only methylated DNA would not be cut enabling subsequent PCR amplification and vice versa."}
pmc-enju-pas
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bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T8127","span":{"begin":0,"end":2},"obj":"TO"},{"id":"T8128","span":{"begin":3,"end":10},"obj":"RBR"},{"id":"T8129","span":{"begin":11,"end":22},"obj":"VB"},{"id":"T8130","span":{"begin":23,"end":31},"obj":"NN"},{"id":"T8131","span":{"begin":32,"end":43},"obj":"NN"},{"id":"T8132","span":{"begin":44,"end":46},"obj":"IN"},{"id":"T8133","span":{"begin":47,"end":48},"obj":"DT"},{"id":"T8134","span":{"begin":49,"end":59},"obj":"JJ"},{"id":"T8135","span":{"begin":60,"end":69},"obj":"NN"},{"id":"T8136","span":{"begin":70,"end":72},"obj":"IN"},{"id":"T8137","span":{"begin":73,"end":78},"obj":"NNP"},{"id":"T8138","span":{"begin":79,"end":83},"obj":"NN"},{"id":"T8139","span":{"begin":84,"end":94},"obj":"NN"},{"id":"T8140","span":{"begin":94,"end":95},"obj":","},{"id":"T8141","span":{"begin":96,"end":118},"obj":"NNPS"},{"id":"T8142","span":{"begin":119,"end":123},"obj":"VBD"},{"id":"T8143","span":{"begin":124,"end":133},"obj":"VBN"},{"id":"T8144","span":{"begin":134,"end":135},"obj":"-LRB-"},{"id":"T8145","span":{"begin":135,"end":140},"obj":"CD"},{"id":"T8146","span":{"begin":140,"end":141},"obj":"-RRB-"},{"id":"T8147","span":{"begin":141,"end":142},"obj":","},{"id":"T8148","span":{"begin":143,"end":148},"obj":"WRB"},{"id":"T8149","span":{"begin":149,"end":153},"obj":"RB"},{"id":"T8150","span":{"begin":154,"end":164},"obj":"JJ"},{"id":"T8151","span":{"begin":165,"end":168},"obj":"NN"},{"id":"T8152","span":{"begin":169,"end":174},"obj":"MD"},{"id":"T8153","span":{"begin":175,"end":178},"obj":"RB"},{"id":"T8154","span":{"begin":179,"end":181},"obj":"VB"},{"id":"T8155","span":{"begin":182,"end":185},"obj":"VBN"},{"id":"T8156","span":{"begin":186,"end":194},"obj":"VBG"},{"id":"T8157","span":{"begin":195,"end":205},"obj":"JJ"},{"id":"T8158","span":{"begin":206,"end":209},"obj":"NNP"},{"id":"T8159","span":{"begin":210,"end":223},"obj":"NN"},{"id":"T8160","span":{"begin":224,"end":227},"obj":"CC"},{"id":"T8161","span":{"begin":228,"end":232},"obj":"NN"},{"id":"T8162","span":{"begin":233,"end":238},"obj":"RB"},{"id":"T8163","span":{"begin":238,"end":239},"obj":"."}],"relations":[{"id":"R6767","pred":"aux","subj":"T8127","obj":"T8129"},{"id":"R6768","pred":"advmod","subj":"T8128","obj":"T8129"},{"id":"R6770","pred":"compound","subj":"T8130","obj":"T8131"},{"id":"R6771","pred":"dobj","subj":"T8131","obj":"T8129"},{"id":"R6772","pred":"prep","subj":"T8132","obj":"T8129"},{"id":"R6773","pred":"det","subj":"T8133","obj":"T8135"},{"id":"R6774","pred":"amod","subj":"T8134","obj":"T8135"},{"id":"R6775","pred":"pobj","subj":"T8135","obj":"T8132"},{"id":"R6776","pred":"prep","subj":"T8136","obj":"T8135"},{"id":"R6777","pred":"compound","subj":"T8137","obj":"T8139"},{"id":"R6778","pred":"compound","subj":"T8138","obj":"T8139"},{"id":"R6779","pred":"pobj","subj":"T8139","obj":"T8136"},{"id":"R6780","pred":"punct","subj":"T8140","obj":"T8143"},{"id":"R6781","pred":"nsubjpass","subj":"T8141","obj":"T8143"},{"id":"R6782","pred":"auxpass","subj":"T8142","obj":"T8143"},{"id":"R6784","pred":"punct","subj":"T8144","obj":"T8143"},{"id":"R6785","pred":"npadvmod","subj":"T8145","obj":"T8143"},{"id":"R6786","pred":"punct","subj":"T8146","obj":"T8143"},{"id":"R6787","pred":"punct","subj":"T8147","obj":"T8143"},{"id":"R6788","pred":"advmod","subj":"T8148","obj":"T8155"},{"id":"R6789","pred":"amod","subj":"T8149","obj":"T8151"},{"id":"R6790","pred":"amod","subj":"T8150","obj":"T8151"},{"id":"R6791","pred":"nsubjpass","subj":"T8151","obj":"T8155"},{"id":"R6792","pred":"aux","subj":"T8152","obj":"T8155"},{"id":"R6793","pred":"neg","subj":"T8153","obj":"T8155"},{"id":"R6794","pred":"auxpass","subj":"T8154","obj":"T8155"},{"id":"R6795","pred":"advcl","subj":"T8155","obj":"T8143"},{"id":"R6796","pred":"xcomp","subj":"T8156","obj":"T8155"},{"id":"R6797","pred":"amod","subj":"T8157","obj":"T8159"},{"id":"R6798","pred":"compound","subj":"T8158","obj":"T8159"},{"id":"R6799","pred":"dobj","subj":"T8159","obj":"T8156"},{"id":"R6800","pred":"cc","subj":"T8160","obj":"T8159"},{"id":"R6801","pred":"compound","subj":"T8161","obj":"T8162"},{"id":"R6802","pred":"conj","subj":"T8162","obj":"T8159"},{"id":"R6803","pred":"punct","subj":"T8163","obj":"T8143"}],"text":"To further investigate promoter methylation as a regulatory mechanism of IRF-4 gene expression, restriction-PCR-assays were performed (20,24), where only methylated DNA would not be cut enabling subsequent PCR amplification and vice versa."}
GO-BP
{"project":"GO-BP","denotations":[{"id":"T7841","span":{"begin":32,"end":43},"obj":"http://purl.obolibrary.org/obo/GO_0032259"},{"id":"T7847","span":{"begin":79,"end":94},"obj":"http://purl.obolibrary.org/obo/GO_0010467"}],"text":"To further investigate promoter methylation as a regulatory mechanism of IRF-4 gene expression, restriction-PCR-assays were performed (20,24), where only methylated DNA would not be cut enabling subsequent PCR amplification and vice versa."}
bionlp-st-ge-2016-reference-tees
{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T8448","span":{"begin":73,"end":83},"obj":"Protein"},{"id":"T8449","span":{"begin":84,"end":94},"obj":"Gene_expression"}],"relations":[{"id":"R7038","pred":"themeOf","subj":"T8448","obj":"T8449"}],"text":"To further investigate promoter methylation as a regulatory mechanism of IRF-4 gene expression, restriction-PCR-assays were performed (20,24), where only methylated DNA would not be cut enabling subsequent PCR amplification and vice versa."}
bionlp-st-ge-2016-reference
{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T7818","span":{"begin":73,"end":78},"obj":"Protein"},{"id":"T7819","span":{"begin":84,"end":94},"obj":"Gene_expression"}],"relations":[{"id":"R6491","pred":"themeOf","subj":"T7818","obj":"T7819"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"To further investigate promoter methylation as a regulatory mechanism of IRF-4 gene expression, restriction-PCR-assays were performed (20,24), where only methylated DNA would not be cut enabling subsequent PCR amplification and vice versa."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T8106","span":{"begin":73,"end":78},"obj":"Q15306"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"To further investigate promoter methylation as a regulatory mechanism of IRF-4 gene expression, restriction-PCR-assays were performed (20,24), where only methylated DNA would not be cut enabling subsequent PCR amplification and vice versa."}
test2
{"project":"test2","denotations":[{"id":"T7804","span":{"begin":73,"end":78},"obj":"Protein"},{"id":"T7805","span":{"begin":84,"end":94},"obj":"Gene_expression"}],"relations":[{"id":"R6485","pred":"themeOf","subj":"T7804","obj":"T7805"}],"attributes":[{"id":"M164","pred":"Negation","subj":"T7804","obj":"true"}],"text":"To further investigate promoter methylation as a regulatory mechanism of IRF-4 gene expression, restriction-PCR-assays were performed (20,24), where only methylated DNA would not be cut enabling subsequent PCR amplification and vice versa."}