PMC:1310901 / 15048-15215 JSONTXT

{"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T7774","span":{"begin":6,"end":19},"obj":"Transcription"},{"id":"T7775","span":{"begin":24,"end":31},"obj":"Positive_regulation"},{"id":"T7776","span":{"begin":124,"end":133},"obj":"Positive_regulation"},{"id":"T7784","span":{"begin":0,"end":5},"obj":"Protein"}],"relations":[{"id":"R6469","pred":"themeOf","subj":"T7774","obj":"T7775"},{"id":"R6470","pred":"themeOf","subj":"T7774","obj":"T7776"},{"id":"R6475","pred":"themeOf","subj":"T7784","obj":"T7774"}],"text":"IRF-4 transcription was induced in a time-dependent manner and was observed as early as 24 h after treatment with AzadC and increased over time until 72 h (Figure 2B)."}

{"project":"events-check-again","denotations":[{"id":"T7713","span":{"begin":0,"end":5},"obj":"Protein"},{"id":"T7714","span":{"begin":6,"end":19},"obj":"Transcription"},{"id":"T7715","span":{"begin":24,"end":31},"obj":"Positive_regulation"},{"id":"T7716","span":{"begin":124,"end":133},"obj":"Positive_regulation"}],"relations":[{"id":"R6438","pred":"themeOf","subj":"T7714","obj":"T7715"},{"id":"R6439","pred":"themeOf","subj":"T7714","obj":"T7716"},{"id":"R6437","pred":"themeOf","subj":"T7713","obj":"T7714"}],"text":"IRF-4 transcription was induced in a time-dependent manner and was observed as early as 24 h after treatment with AzadC and increased over time until 72 h (Figure 2B)."}

{"project":"sentences","denotations":[{"id":"T7010","span":{"begin":0,"end":167},"obj":"Sentence"},{"id":"T114","span":{"begin":0,"end":167},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"IRF-4 transcription was induced in a time-dependent manner and was observed as early as 24 h after treatment with AzadC and increased over time until 72 h (Figure 2B)."}

{"project":"pmc-enju-pas","denotations":[{"id":"T7140","span":{"begin":0,"end":5},"obj":"NN"},{"id":"T7141","span":{"begin":6,"end":19},"obj":"NN"},{"id":"T7142","span":{"begin":20,"end":23},"obj":"VB"},{"id":"T7143","span":{"begin":24,"end":31},"obj":"VB"},{"id":"T7144","span":{"begin":32,"end":34},"obj":"IN"},{"id":"T7145","span":{"begin":35,"end":36},"obj":"DT"},{"id":"T7146","span":{"begin":37,"end":51},"obj":"JJ"},{"id":"T7147","span":{"begin":52,"end":58},"obj":"NN"},{"id":"T7148","span":{"begin":59,"end":62},"obj":"CC"},{"id":"T7149","span":{"begin":63,"end":66},"obj":"VB"},{"id":"T7150","span":{"begin":67,"end":75},"obj":"VB"},{"id":"T7151","span":{"begin":76,"end":78},"obj":"RB"},{"id":"T7152","span":{"begin":79,"end":84},"obj":"RB"},{"id":"T7153","span":{"begin":85,"end":87},"obj":"IN"},{"id":"T7154","span":{"begin":88,"end":90},"obj":"CD"},{"id":"T7155","span":{"begin":91,"end":92},"obj":"NN"},{"id":"T7156","span":{"begin":93,"end":98},"obj":"IN"},{"id":"T7157","span":{"begin":99,"end":108},"obj":"NN"},{"id":"T7158","span":{"begin":109,"end":113},"obj":"IN"},{"id":"T7159","span":{"begin":114,"end":119},"obj":"NN"},{"id":"T7160","span":{"begin":120,"end":123},"obj":"CC"},{"id":"T7161","span":{"begin":124,"end":133},"obj":"VB"},{"id":"T7162","span":{"begin":134,"end":138},"obj":"IN"},{"id":"T7163","span":{"begin":139,"end":143},"obj":"NN"},{"id":"T7164","span":{"begin":144,"end":149},"obj":"IN"},{"id":"T7165","span":{"begin":150,"end":152},"obj":"CD"},{"id":"T7166","span":{"begin":153,"end":154},"obj":"NN"},{"id":"T7167","span":{"begin":155,"end":156},"obj":"-LRB-"},{"id":"T7168","span":{"begin":156,"end":162},"obj":"NN"},{"id":"T7169","span":{"begin":163,"end":165},"obj":"NN"},{"id":"T7170","span":{"begin":165,"end":166},"obj":"-RRB-"}],"relations":[{"id":"R5931","pred":"arg1Of","subj":"T7141","obj":"T7140"},{"id":"R5932","pred":"arg1Of","subj":"T7141","obj":"T7142"},{"id":"R5933","pred":"arg2Of","subj":"T7141","obj":"T7143"},{"id":"R5934","pred":"arg1Of","subj":"T7141","obj":"T7149"},{"id":"R5935","pred":"arg2Of","subj":"T7141","obj":"T7150"},{"id":"R5936","pred":"arg1Of","subj":"T7141","obj":"T7161"},{"id":"R5937","pred":"arg2Of","subj":"T7143","obj":"T7142"},{"id":"R5938","pred":"arg1Of","subj":"T7143","obj":"T7144"},{"id":"R5939","pred":"arg1Of","subj":"T7143","obj":"T7148"},{"id":"R5940","pred":"arg2Of","subj":"T7147","obj":"T7144"},{"id":"R5941","pred":"arg1Of","subj":"T7147","obj":"T7145"},{"id":"R5942","pred":"arg1Of","subj":"T7147","obj":"T7146"},{"id":"R5943","pred":"arg2Of","subj":"T7150","obj":"T7149"},{"id":"R5944","pred":"arg1Of","subj":"T7150","obj":"T7152"},{"id":"R5945","pred":"arg1Of","subj":"T7150","obj":"T7156"},{"id":"R5946","pred":"arg1Of","subj":"T7150","obj":"T7160"},{"id":"R5947","pred":"arg1Of","subj":"T7152","obj":"T7151"},{"id":"R5948","pred":"arg1Of","subj":"T7152","obj":"T7153"},{"id":"R5949","pred":"arg2Of","subj":"T7155","obj":"T7153"},{"id":"R5950","pred":"arg1Of","subj":"T7155","obj":"T7154"},{"id":"R5951","pred":"arg2Of","subj":"T7157","obj":"T7156"},{"id":"R5952","pred":"arg1Of","subj":"T7157","obj":"T7158"},{"id":"R5953","pred":"arg2Of","subj":"T7159","obj":"T7158"},{"id":"R5954","pred":"arg2Of","subj":"T7160","obj":"T7148"},{"id":"R5955","pred":"arg2Of","subj":"T7161","obj":"T7160"},{"id":"R5956","pred":"arg1Of","subj":"T7161","obj":"T7162"},{"id":"R5957","pred":"arg1Of","subj":"T7161","obj":"T7164"},{"id":"R5958","pred":"arg2Of","subj":"T7163","obj":"T7162"},{"id":"R5959","pred":"arg2Of","subj":"T7166","obj":"T7164"},{"id":"R5960","pred":"arg1Of","subj":"T7166","obj":"T7165"},{"id":"R5961","pred":"arg1Of","subj":"T7166","obj":"T7167"},{"id":"R5962","pred":"arg2Of","subj":"T7169","obj":"T7167"},{"id":"R5963","pred":"arg1Of","subj":"T7169","obj":"T7168"},{"id":"R5964","pred":"arg3Of","subj":"T7170","obj":"T7167"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"IRF-4 transcription was induced in a time-dependent manner and was observed as early as 24 h after treatment with AzadC and increased over time until 72 h (Figure 2B)."}

{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T7435","span":{"begin":0,"end":5},"obj":"CD"},{"id":"T7436","span":{"begin":6,"end":19},"obj":"NN"},{"id":"T7437","span":{"begin":20,"end":23},"obj":"VBD"},{"id":"T7438","span":{"begin":24,"end":31},"obj":"VBN"},{"id":"T7439","span":{"begin":32,"end":34},"obj":"IN"},{"id":"T7440","span":{"begin":35,"end":36},"obj":"DT"},{"id":"T7441","span":{"begin":37,"end":51},"obj":"JJ"},{"id":"T7442","span":{"begin":52,"end":58},"obj":"NN"},{"id":"T7443","span":{"begin":59,"end":62},"obj":"CC"},{"id":"T7444","span":{"begin":63,"end":66},"obj":"VBD"},{"id":"T7445","span":{"begin":67,"end":75},"obj":"VBN"},{"id":"T7446","span":{"begin":76,"end":78},"obj":"RB"},{"id":"T7447","span":{"begin":79,"end":84},"obj":"RB"},{"id":"T7448","span":{"begin":85,"end":87},"obj":"IN"},{"id":"T7449","span":{"begin":88,"end":90},"obj":"CD"},{"id":"T7450","span":{"begin":91,"end":92},"obj":"NN"},{"id":"T7451","span":{"begin":93,"end":98},"obj":"IN"},{"id":"T7452","span":{"begin":99,"end":108},"obj":"NN"},{"id":"T7453","span":{"begin":109,"end":113},"obj":"IN"},{"id":"T7454","span":{"begin":114,"end":119},"obj":"NNP"},{"id":"T7455","span":{"begin":120,"end":123},"obj":"CC"},{"id":"T7456","span":{"begin":124,"end":133},"obj":"VBD"},{"id":"T7457","span":{"begin":134,"end":138},"obj":"IN"},{"id":"T7458","span":{"begin":139,"end":143},"obj":"NN"},{"id":"T7459","span":{"begin":144,"end":149},"obj":"IN"},{"id":"T7460","span":{"begin":150,"end":152},"obj":"CD"},{"id":"T7461","span":{"begin":153,"end":154},"obj":"NN"},{"id":"T7462","span":{"begin":155,"end":156},"obj":"-LRB-"},{"id":"T7463","span":{"begin":156,"end":162},"obj":"NN"},{"id":"T7464","span":{"begin":163,"end":165},"obj":"NN"},{"id":"T7465","span":{"begin":165,"end":166},"obj":"-RRB-"},{"id":"T7466","span":{"begin":166,"end":167},"obj":"."}],"relations":[{"id":"R6215","pred":"nummod","subj":"T7435","obj":"T7436"},{"id":"R6216","pred":"nsubjpass","subj":"T7436","obj":"T7438"},{"id":"R6217","pred":"auxpass","subj":"T7437","obj":"T7438"},{"id":"R6218","pred":"ROOT","subj":"T7438","obj":"T7438"},{"id":"R6219","pred":"prep","subj":"T7439","obj":"T7438"},{"id":"R6220","pred":"det","subj":"T7440","obj":"T7442"},{"id":"R6221","pred":"amod","subj":"T7441","obj":"T7442"},{"id":"R6222","pred":"pobj","subj":"T7442","obj":"T7439"},{"id":"R6223","pred":"cc","subj":"T7443","obj":"T7438"},{"id":"R6224","pred":"auxpass","subj":"T7444","obj":"T7445"},{"id":"R6225","pred":"conj","subj":"T7445","obj":"T7438"},{"id":"R6226","pred":"advmod","subj":"T7446","obj":"T7447"},{"id":"R6227","pred":"advmod","subj":"T7447","obj":"T7445"},{"id":"R6228","pred":"mark","subj":"T7448","obj":"T7456"},{"id":"R6229","pred":"nummod","subj":"T7449","obj":"T7450"},{"id":"R6230","pred":"nsubj","subj":"T7450","obj":"T7456"},{"id":"R6231","pred":"prep","subj":"T7451","obj":"T7450"},{"id":"R6232","pred":"pobj","subj":"T7452","obj":"T7451"},{"id":"R6233","pred":"prep","subj":"T7453","obj":"T7452"},{"id":"R6234","pred":"pobj","subj":"T7454","obj":"T7453"},{"id":"R6235","pred":"cc","subj":"T7455","obj":"T7450"},{"id":"R6236","pred":"advcl","subj":"T7456","obj":"T7445"},{"id":"R6237","pred":"prep","subj":"T7457","obj":"T7456"},{"id":"R6238","pred":"pobj","subj":"T7458","obj":"T7457"},{"id":"R6239","pred":"prep","subj":"T7459","obj":"T7456"},{"id":"R6240","pred":"nummod","subj":"T7460","obj":"T7461"},{"id":"R6241","pred":"pobj","subj":"T7461","obj":"T7459"},{"id":"R6242","pred":"punct","subj":"T7462","obj":"T7463"},{"id":"R6243","pred":"compound","subj":"T7463","obj":"T7464"},{"id":"R6244","pred":"appos","subj":"T7464","obj":"T7461"},{"id":"R6245","pred":"punct","subj":"T7465","obj":"T7461"},{"id":"R6246","pred":"punct","subj":"T7466","obj":"T7438"}],"text":"IRF-4 transcription was induced in a time-dependent manner and was observed as early as 24 h after treatment with AzadC and increased over time until 72 h (Figure 2B)."}

{"project":"GO-BP","denotations":[{"id":"T7022","span":{"begin":6,"end":19},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"IRF-4 transcription was induced in a time-dependent manner and was observed as early as 24 h after treatment with AzadC and increased over time until 72 h (Figure 2B)."}

{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T7742","span":{"begin":0,"end":5},"obj":"Protein"},{"id":"T7743","span":{"begin":6,"end":19},"obj":"Transcription"},{"id":"T7744","span":{"begin":24,"end":31},"obj":"Positive_regulation"},{"id":"T7745","span":{"begin":124,"end":133},"obj":"Positive_regulation"}],"relations":[{"id":"R6454","pred":"themeOf","subj":"T7742","obj":"T7743"},{"id":"R6455","pred":"themeOf","subj":"T7743","obj":"T7744"},{"id":"R6456","pred":"themeOf","subj":"T7743","obj":"T7745"}],"text":"IRF-4 transcription was induced in a time-dependent manner and was observed as early as 24 h after treatment with AzadC and increased over time until 72 h (Figure 2B)."}

{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T6985","span":{"begin":0,"end":5},"obj":"Protein"},{"id":"T6986","span":{"begin":6,"end":19},"obj":"Transcription"},{"id":"T6987","span":{"begin":24,"end":31},"obj":"Positive_regulation"},{"id":"T6988","span":{"begin":124,"end":133},"obj":"Positive_regulation"}],"relations":[{"id":"R5803","pred":"themeOf","subj":"T6985","obj":"T6986"},{"id":"R5804","pred":"themeOf","subj":"T6986","obj":"T6987"},{"id":"R5805","pred":"themeOf","subj":"T6986","obj":"T6988"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"IRF-4 transcription was induced in a time-dependent manner and was observed as early as 24 h after treatment with AzadC and increased over time until 72 h (Figure 2B)."}

{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T7307","span":{"begin":0,"end":5},"obj":"Q15306"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"IRF-4 transcription was induced in a time-dependent manner and was observed as early as 24 h after treatment with AzadC and increased over time until 72 h (Figure 2B)."}

{"project":"test2","denotations":[{"id":"T6953","span":{"begin":0,"end":5},"obj":"Protein"},{"id":"T6954","span":{"begin":6,"end":19},"obj":"Transcription"},{"id":"T6955","span":{"begin":24,"end":31},"obj":"Positive_regulation"},{"id":"T6956","span":{"begin":42,"end":51},"obj":"Regulation"},{"id":"T6957","span":{"begin":124,"end":133},"obj":"Positive_regulation"}],"relations":[{"id":"R5781","pred":"themeOf","subj":"T6953","obj":"T6954"},{"id":"R5782","pred":"themeOf","subj":"T6954","obj":"T6955"},{"id":"R5783","pred":"themeOf","subj":"T6954","obj":"T6957"},{"id":"R5784","pred":"themeOf","subj":"T6955","obj":"T6956"},{"id":"R5785","pred":"themeOf","subj":"T6955","obj":"T6957"}],"attributes":[{"id":"M151","pred":"Speculation","subj":"T6956","obj":"true"}],"text":"IRF-4 transcription was induced in a time-dependent manner and was observed as early as 24 h after treatment with AzadC and increased over time until 72 h (Figure 2B)."}