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PMC:1310901 / 15048-15215 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T7774 6-19 Transcription denotes transcription
T7775 24-31 Positive_regulation denotes induced
T7776 124-133 Positive_regulation denotes increased
T7784 0-5 Protein denotes IRF-4
R6469 T7774 T7775 themeOf transcription,induced
R6470 T7774 T7776 themeOf transcription,increased
R6475 T7784 T7774 themeOf IRF-4,transcription

events-check-again

Id Subject Object Predicate Lexical cue
T7713 0-5 Protein denotes IRF-4
T7714 6-19 Transcription denotes transcription
T7715 24-31 Positive_regulation denotes induced
T7716 124-133 Positive_regulation denotes increased
R6438 T7714 T7715 themeOf transcription,induced
R6439 T7714 T7716 themeOf transcription,increased
R6437 T7713 T7714 themeOf IRF-4,transcription

sentences

Id Subject Object Predicate Lexical cue
T7010 0-167 Sentence denotes IRF-4 transcription was induced in a time-dependent manner and was observed as early as 24 h after treatment with AzadC and increased over time until 72 h (Figure 2B).
T114 0-167 Sentence denotes IRF-4 transcription was induced in a time-dependent manner and was observed as early as 24 h after treatment with AzadC and increased over time until 72 h (Figure 2B).

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7140 0-5 NN denotes IRF-4
T7141 6-19 NN denotes transcription
T7142 20-23 VB denotes was
T7143 24-31 VB denotes induced
T7144 32-34 IN denotes in
T7145 35-36 DT denotes a
T7146 37-51 JJ denotes time-dependent
T7147 52-58 NN denotes manner
T7148 59-62 CC denotes and
T7149 63-66 VB denotes was
T7150 67-75 VB denotes observed
T7151 76-78 RB denotes as
T7152 79-84 RB denotes early
T7153 85-87 IN denotes as
T7154 88-90 CD denotes 24
T7155 91-92 NN denotes h
T7156 93-98 IN denotes after
T7157 99-108 NN denotes treatment
T7158 109-113 IN denotes with
T7159 114-119 NN denotes AzadC
T7160 120-123 CC denotes and
T7161 124-133 VB denotes increased
T7162 134-138 IN denotes over
T7163 139-143 NN denotes time
T7164 144-149 IN denotes until
T7165 150-152 CD denotes 72
T7166 153-154 NN denotes h
T7167 155-156 -LRB- denotes (
T7168 156-162 NN denotes Figure
T7169 163-165 NN denotes 2B
T7170 165-166 -RRB- denotes )
R5931 T7141 T7140 arg1Of transcription,IRF-4
R5932 T7141 T7142 arg1Of transcription,was
R5933 T7141 T7143 arg2Of transcription,induced
R5934 T7141 T7149 arg1Of transcription,was
R5935 T7141 T7150 arg2Of transcription,observed
R5936 T7141 T7161 arg1Of transcription,increased
R5937 T7143 T7142 arg2Of induced,was
R5938 T7143 T7144 arg1Of induced,in
R5939 T7143 T7148 arg1Of induced,and
R5940 T7147 T7144 arg2Of manner,in
R5941 T7147 T7145 arg1Of manner,a
R5942 T7147 T7146 arg1Of manner,time-dependent
R5943 T7150 T7149 arg2Of observed,was
R5944 T7150 T7152 arg1Of observed,early
R5945 T7150 T7156 arg1Of observed,after
R5946 T7150 T7160 arg1Of observed,and
R5947 T7152 T7151 arg1Of early,as
R5948 T7152 T7153 arg1Of early,as
R5949 T7155 T7153 arg2Of h,as
R5950 T7155 T7154 arg1Of h,24
R5951 T7157 T7156 arg2Of treatment,after
R5952 T7157 T7158 arg1Of treatment,with
R5953 T7159 T7158 arg2Of AzadC,with
R5954 T7160 T7148 arg2Of and,and
R5955 T7161 T7160 arg2Of increased,and
R5956 T7161 T7162 arg1Of increased,over
R5957 T7161 T7164 arg1Of increased,until
R5958 T7163 T7162 arg2Of time,over
R5959 T7166 T7164 arg2Of h,until
R5960 T7166 T7165 arg1Of h,72
R5961 T7166 T7167 arg1Of h,(
R5962 T7169 T7167 arg2Of 2B,(
R5963 T7169 T7168 arg1Of 2B,Figure
R5964 T7170 T7167 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T7435 0-5 CD denotes IRF-4
T7436 6-19 NN denotes transcription
T7437 20-23 VBD denotes was
T7438 24-31 VBN denotes induced
T7439 32-34 IN denotes in
T7440 35-36 DT denotes a
T7441 37-51 JJ denotes time-dependent
T7442 52-58 NN denotes manner
T7443 59-62 CC denotes and
T7444 63-66 VBD denotes was
T7445 67-75 VBN denotes observed
T7446 76-78 RB denotes as
T7447 79-84 RB denotes early
T7448 85-87 IN denotes as
T7449 88-90 CD denotes 24
T7450 91-92 NN denotes h
T7451 93-98 IN denotes after
T7452 99-108 NN denotes treatment
T7453 109-113 IN denotes with
T7454 114-119 NNP denotes AzadC
T7455 120-123 CC denotes and
T7456 124-133 VBD denotes increased
T7457 134-138 IN denotes over
T7458 139-143 NN denotes time
T7459 144-149 IN denotes until
T7460 150-152 CD denotes 72
T7461 153-154 NN denotes h
T7462 155-156 -LRB- denotes (
T7463 156-162 NN denotes Figure
T7464 163-165 NN denotes 2B
T7465 165-166 -RRB- denotes )
T7466 166-167 . denotes .
R6215 T7435 T7436 nummod IRF-4,transcription
R6216 T7436 T7438 nsubjpass transcription,induced
R6217 T7437 T7438 auxpass was,induced
R6218 T7438 T7438 ROOT induced,induced
R6219 T7439 T7438 prep in,induced
R6220 T7440 T7442 det a,manner
R6221 T7441 T7442 amod time-dependent,manner
R6222 T7442 T7439 pobj manner,in
R6223 T7443 T7438 cc and,induced
R6224 T7444 T7445 auxpass was,observed
R6225 T7445 T7438 conj observed,induced
R6226 T7446 T7447 advmod as,early
R6227 T7447 T7445 advmod early,observed
R6228 T7448 T7456 mark as,increased
R6229 T7449 T7450 nummod 24,h
R6230 T7450 T7456 nsubj h,increased
R6231 T7451 T7450 prep after,h
R6232 T7452 T7451 pobj treatment,after
R6233 T7453 T7452 prep with,treatment
R6234 T7454 T7453 pobj AzadC,with
R6235 T7455 T7450 cc and,h
R6236 T7456 T7445 advcl increased,observed
R6237 T7457 T7456 prep over,increased
R6238 T7458 T7457 pobj time,over
R6239 T7459 T7456 prep until,increased
R6240 T7460 T7461 nummod 72,h
R6241 T7461 T7459 pobj h,until
R6242 T7462 T7463 punct (,Figure
R6243 T7463 T7464 compound Figure,2B
R6244 T7464 T7461 appos 2B,h
R6245 T7465 T7461 punct ),h
R6246 T7466 T7438 punct .,induced

GO-BP

Id Subject Object Predicate Lexical cue
T7022 6-19 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T7742 0-5 Protein denotes IRF-4
T7743 6-19 Transcription denotes transcription
T7744 24-31 Positive_regulation denotes induced
T7745 124-133 Positive_regulation denotes increased
R6454 T7742 T7743 themeOf IRF-4,transcription
R6455 T7743 T7744 themeOf transcription,induced
R6456 T7743 T7745 themeOf transcription,increased

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T6985 0-5 Protein denotes IRF-4
T6986 6-19 Transcription denotes transcription
T6987 24-31 Positive_regulation denotes induced
T6988 124-133 Positive_regulation denotes increased
R5803 T6985 T6986 themeOf IRF-4,transcription
R5804 T6986 T6987 themeOf transcription,induced
R5805 T6986 T6988 themeOf transcription,increased

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7307 0-5 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue Speculation
T6953 0-5 Protein denotes IRF-4
T6954 6-19 Transcription denotes transcription
T6955 24-31 Positive_regulation denotes induced
T6956 42-51 Regulation denotes dependent true
T6957 124-133 Positive_regulation denotes increased
R5781 T6953 T6954 themeOf IRF-4,transcription
R5782 T6954 T6955 themeOf transcription,induced
R5783 T6954 T6957 themeOf transcription,increased
R5784 T6955 T6956 themeOf induced,dependent
R5785 T6955 T6957 themeOf induced,increased