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PMC:1310620 / 2455-3602 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T923 0-2 NN denotes BC
T924 3-5 VBZ denotes is
T925 6-15 RB denotes currently
T926 16-19 DT denotes the
T927 28-33 NN denotes cause
T928 20-27 VBG denotes leading
T929 34-36 IN denotes of
T930 37-43 NN denotes cancer
T931 44-51 VBN denotes related
T932 43-44 HYPH denotes -
T933 52-57 NN denotes death
T934 58-60 IN denotes in
T935 61-64 DT denotes the
T936 72-78 NNP denotes States
T937 65-71 NNP denotes United
T938 78-80 , denotes ,
T939 80-87 VBG denotes causing
T940 88-90 CD denotes 28
T941 90-91 NN denotes %
T942 92-94 IN denotes of
T943 95-98 DT denotes all
T944 106-112 NNS denotes deaths
T945 99-105 NN denotes cancer
T946 113-114 -LRB- denotes [
T947 114-115 CD denotes 1
T948 115-116 -RRB- denotes ]
T949 116-117 . denotes .
T950 117-248 sentence denotes Although cigarette smoking is the primary risk factor, only 10–15% of heavy smokers (greater than 20 pack years) develop BC [1-3].
T951 118-126 IN denotes Although
T952 145-147 VBZ denotes is
T953 127-136 NN denotes cigarette
T954 137-144 NN denotes smoking
T955 231-238 VBP denotes develop
T956 148-151 DT denotes the
T957 165-171 NN denotes factor
T958 152-159 JJ denotes primary
T959 160-164 NN denotes risk
T960 171-173 , denotes ,
T961 173-177 RB denotes only
T962 181-183 CD denotes 15
T963 178-180 CD denotes 10
T964 180-181 SYM denotes –
T965 183-184 NN denotes %
T966 185-187 IN denotes of
T967 188-193 JJ denotes heavy
T968 194-201 NNS denotes smokers
T969 202-203 -LRB- denotes (
T970 224-229 NNS denotes years
T971 203-210 JJR denotes greater
T972 216-218 CD denotes 20
T973 211-215 IN denotes than
T974 219-223 NN denotes pack
T975 229-230 -RRB- denotes )
T976 239-241 NN denotes BC
T977 242-243 -LRB- denotes [
T978 243-244 CD denotes 1
T979 244-245 SYM denotes -
T980 245-246 CD denotes 3
T981 246-247 -RRB- denotes ]
T982 247-248 . denotes .
T983 248-435 sentence denotes Antioxidant and DNA repair enzymes that provide protection from the effects of cigarette smoke are expressed in the progenitor cells for BC, normal bronchial epithelial cells (NBEC) [1].
T984 249-260 NN denotes Antioxidant
T985 276-283 NNS denotes enzymes
T986 261-264 CC denotes and
T987 265-268 NN denotes DNA
T988 269-275 NN denotes repair
T989 348-357 VBN denotes expressed
T990 284-288 WDT denotes that
T991 289-296 VBP denotes provide
T992 297-307 NN denotes protection
T993 308-312 IN denotes from
T994 313-316 DT denotes the
T995 317-324 NNS denotes effects
T996 325-327 IN denotes of
T997 328-337 NN denotes cigarette
T998 338-343 NN denotes smoke
T999 344-347 VBP denotes are
T1000 358-360 IN denotes in
T1001 361-364 DT denotes the
T1002 376-381 NNS denotes cells
T1003 365-375 NN denotes progenitor
T1004 382-385 IN denotes for
T1005 386-388 NN denotes BC
T1006 388-390 , denotes ,
T1007 390-396 JJ denotes normal
T1008 418-423 NNS denotes cells
T1009 397-406 JJ denotes bronchial
T1010 407-417 JJ denotes epithelial
T1011 424-425 -LRB- denotes (
T1012 425-429 NN denotes NBEC
T1013 429-430 -RRB- denotes )
T1014 431-432 -LRB- denotes [
T1015 432-433 CD denotes 1
T1016 433-434 -RRB- denotes ]
T1017 434-435 . denotes .
T1018 435-550 sentence denotes Inherited inter-individual variation in the function of these genes plays a role in determining risk for BC [4-6].
T1019 436-445 VBN denotes Inherited
T1020 463-472 NN denotes variation
T1021 446-462 JJ denotes inter-individual
T1022 504-509 VBZ denotes plays
T1023 473-475 IN denotes in
T1024 476-479 DT denotes the
T1025 480-488 NN denotes function
T1026 489-491 IN denotes of
T1027 492-497 DT denotes these
T1028 498-503 NNS denotes genes
T1029 510-511 DT denotes a
T1030 512-516 NN denotes role
T1031 517-519 IN denotes in
T1032 520-531 VBG denotes determining
T1033 532-536 NN denotes risk
T1034 537-540 IN denotes for
T1035 541-543 NN denotes BC
T1036 544-545 -LRB- denotes [
T1037 545-546 CD denotes 4
T1038 546-547 SYM denotes -
T1039 547-548 CD denotes 6
T1040 548-549 -RRB- denotes ]
T1041 549-550 . denotes .
T1042 550-772 sentence denotes Antioxidant enzymes protect NBEC from reactive oxygen species produced by interaction with and metabolism of xenobiotics such as pollution and cigarette smoke [4-7] as well as those produced by normal cellular metabolism.
T1043 551-562 NN denotes Antioxidant
T1044 563-570 NNS denotes enzymes
T1045 571-578 VBP denotes protect
T1046 579-583 NN denotes NBEC
T1047 584-588 IN denotes from
T1048 589-597 JJ denotes reactive
T1049 605-612 NNS denotes species
T1050 598-604 NN denotes oxygen
T1051 613-621 VBN denotes produced
T1052 622-624 IN denotes by
T1053 625-636 NN denotes interaction
T1054 637-641 IN denotes with
T1055 642-645 CC denotes and
T1056 646-656 NN denotes metabolism
T1057 660-671 NNS denotes xenobiotics
T1058 657-659 IN denotes of
T1059 672-676 JJ denotes such
T1060 677-679 IN denotes as
T1061 680-689 NN denotes pollution
T1062 690-693 CC denotes and
T1063 694-703 NN denotes cigarette
T1064 704-709 NN denotes smoke
T1065 710-711 -LRB- denotes [
T1066 711-712 CD denotes 4
T1067 712-713 SYM denotes -
T1068 713-714 CD denotes 7
T1069 714-715 -RRB- denotes ]
T1070 716-718 RB denotes as
T1071 724-726 IN denotes as
T1072 719-723 RB denotes well
T1073 727-732 DT denotes those
T1074 733-741 VBN denotes produced
T1075 742-744 IN denotes by
T1076 745-751 JJ denotes normal
T1077 761-771 NN denotes metabolism
T1078 752-760 JJ denotes cellular
T1079 771-772 . denotes .
T1080 772-969 sentence denotes Reactive oxygen species cause many damaging reactions including denaturation of proteins, cross-linking of lipids and proteins and modification of nucleic acid bases, which can lead to cancer [7].
T1081 773-781 JJ denotes Reactive
T1082 789-796 NNS denotes species
T1083 782-788 NN denotes oxygen
T1084 797-802 VBP denotes cause
T1085 803-807 JJ denotes many
T1086 817-826 NNS denotes reactions
T1087 808-816 VBG denotes damaging
T1088 827-836 VBG denotes including
T1089 837-849 NN denotes denaturation
T1090 850-852 IN denotes of
T1091 853-861 NN denotes proteins
T1092 861-863 , denotes ,
T1093 863-876 NN denotes cross-linking
T1094 877-879 IN denotes of
T1095 880-886 NNS denotes lipids
T1096 887-890 CC denotes and
T1097 891-899 NN denotes proteins
T1098 900-903 CC denotes and
T1099 904-916 NN denotes modification
T1100 917-919 IN denotes of
T1101 920-927 JJ denotes nucleic
T1102 928-932 NN denotes acid
T1103 933-938 NNS denotes bases
T1104 938-940 , denotes ,
T1105 940-945 WDT denotes which
T1106 950-954 VB denotes lead
T1107 946-949 MD denotes can
T1108 955-957 IN denotes to
T1109 958-964 NN denotes cancer
T1110 965-966 -LRB- denotes [
T1111 966-967 CD denotes 7
T1112 967-968 -RRB- denotes ]
T1113 968-969 . denotes .
T1114 969-1147 sentence denotes DNA repair enzymes repair the frequent damage to DNA caused by oxidant stress as well as other stresses, including bulky adducts derived from carcinogens in cigarette smoke [8].
T1115 970-973 NN denotes DNA
T1116 974-980 NN denotes repair
T1117 981-988 NNS denotes enzymes
T1118 989-995 VBP denotes repair
T1119 996-999 DT denotes the
T1120 1009-1015 NN denotes damage
T1121 1000-1008 JJ denotes frequent
T1122 1016-1018 IN denotes to
T1123 1019-1022 NN denotes DNA
T1124 1023-1029 VBN denotes caused
T1125 1030-1032 IN denotes by
T1126 1033-1040 NN denotes oxidant
T1127 1041-1047 NN denotes stress
T1128 1048-1050 RB denotes as
T1129 1056-1058 IN denotes as
T1130 1051-1055 RB denotes well
T1131 1059-1064 JJ denotes other
T1132 1065-1073 NNS denotes stresses
T1133 1073-1075 , denotes ,
T1134 1075-1084 VBG denotes including
T1135 1085-1090 JJ denotes bulky
T1136 1091-1098 NNS denotes adducts
T1137 1099-1106 VBN denotes derived
T1138 1107-1111 IN denotes from
T1139 1112-1123 NNS denotes carcinogens
T1140 1124-1126 IN denotes in
T1141 1127-1136 NN denotes cigarette
T1142 1137-1142 NN denotes smoke
T1143 1143-1144 -LRB- denotes [
T1144 1144-1145 CD denotes 8
T1145 1145-1146 -RRB- denotes ]
T1146 1146-1147 . denotes .
R397 T927 T924 attr cause,is
R398 T928 T927 amod leading,cause
R401 T931 T933 amod related,death
R402 T932 T931 punct -,related
R406 T936 T934 pobj States,in
R407 T937 T936 compound United,States
R414 T944 T942 pobj deaths,of
R415 T945 T944 compound cancer,deaths
R421 T952 T955 advcl is,develop
R422 T953 T954 compound cigarette,smoking
R423 T954 T952 nsubj smoking,is
R425 T957 T952 attr factor,is
R426 T958 T957 amod primary,factor
R427 T959 T957 compound risk,factor
R430 T962 T965 nummod 15,%
R431 T963 T962 quantmod 10,15
R432 T964 T962 punct –,15
R438 T970 T968 parataxis years,smokers
R439 T971 T972 amod greater,20
R441 T973 T972 quantmod than,20
R442 T974 T970 compound pack,years
R452 T985 T989 nsubjpass enzymes,expressed
R453 T986 T984 cc and,Antioxidant
R454 T987 T988 compound DNA,repair
R455 T988 T984 conj repair,Antioxidant
R468 T1002 T1000 pobj cells,in
R469 T1003 T1002 compound progenitor,cells
R474 T1008 T1002 appos cells,cells
R475 T1009 T1008 amod bronchial,cells
R476 T1010 T1008 amod epithelial,cells
R485 T1020 T1022 nsubj variation,plays
R486 T1021 T1020 amod inter-individual,variation
R511 T1049 T1047 pobj species,from
R512 T1050 T1049 compound oxygen,species
R519 T1057 T1053 conj xenobiotics,interaction
R520 T1058 T1056 prep of,metabolism
R533 T1071 T1049 cc as,species
R534 T1072 T1071 advmod well,as
R539 T1077 T1075 pobj metabolism,by
R540 T1078 T1077 amod cellular,metabolism
R543 T1082 T1084 nsubj species,cause
R544 T1083 T1082 compound oxygen,species
R546 T1086 T1084 dobj reactions,cause
R547 T1087 T1086 amod damaging,reactions
R566 T1106 T1086 relcl lead,reactions
R567 T1107 T1106 aux can,lead
R578 T1120 T1118 dobj damage,repair
R579 T1121 T1120 amod frequent,damage
R587 T1129 T1127 cc as,stress
R588 T1130 T1129 advmod well,as
R394 T923 T924 nsubj BC,is
R395 T925 T924 advmod currently,is
R396 T926 T927 det the,cause
R399 T929 T927 prep of,cause
R400 T930 T931 npadvmod cancer,related
R403 T933 T929 pobj death,of
R404 T934 T924 prep in,is
R405 T935 T936 det the,States
R408 T938 T924 punct ", ",is
R409 T939 T924 advcl causing,is
R410 T940 T941 nummod 28,%
R411 T941 T939 dobj %,causing
R412 T942 T941 prep of,%
R413 T943 T944 det all,deaths
R416 T946 T947 punct [,1
R417 T947 T924 parataxis 1,is
R418 T948 T947 punct ],1
R419 T949 T924 punct .,is
R420 T951 T952 mark Although,is
R424 T956 T957 det the,factor
R428 T960 T955 punct ", ",develop
R429 T961 T962 advmod only,15
R433 T965 T955 nsubj %,develop
R434 T966 T965 prep of,%
R435 T967 T968 amod heavy,smokers
R436 T968 T966 pobj smokers,of
R437 T969 T970 punct (,years
R440 T972 T974 nummod 20,pack
R443 T975 T970 punct ),years
R444 T976 T955 dobj BC,develop
R445 T977 T978 punct [,1
R446 T978 T955 parataxis 1,develop
R447 T979 T980 punct -,3
R448 T980 T978 prep 3,1
R449 T981 T978 punct ],1
R450 T982 T955 punct .,develop
R451 T984 T985 nmod Antioxidant,enzymes
R456 T990 T991 dep that,provide
R457 T991 T985 relcl provide,enzymes
R458 T992 T991 dobj protection,provide
R459 T993 T992 prep from,protection
R460 T994 T995 det the,effects
R461 T995 T993 pobj effects,from
R462 T996 T995 prep of,effects
R463 T997 T998 compound cigarette,smoke
R464 T998 T996 pobj smoke,of
R465 T999 T989 auxpass are,expressed
R466 T1000 T989 prep in,expressed
R467 T1001 T1002 det the,cells
R470 T1004 T1002 prep for,cells
R471 T1005 T1004 pobj BC,for
R472 T1006 T1002 punct ", ",cells
R473 T1007 T1008 amod normal,cells
R477 T1011 T1008 punct (,cells
R478 T1012 T1008 appos NBEC,cells
R479 T1013 T989 punct ),expressed
R480 T1014 T1015 punct [,1
R481 T1015 T989 parataxis 1,expressed
R482 T1016 T1015 punct ],1
R483 T1017 T989 punct .,expressed
R484 T1019 T1020 amod Inherited,variation
R487 T1023 T1020 prep in,variation
R488 T1024 T1025 det the,function
R489 T1025 T1023 pobj function,in
R490 T1026 T1025 prep of,function
R491 T1027 T1028 det these,genes
R492 T1028 T1026 pobj genes,of
R493 T1029 T1030 det a,role
R494 T1030 T1022 dobj role,plays
R495 T1031 T1022 prep in,plays
R496 T1032 T1031 pcomp determining,in
R497 T1033 T1032 dobj risk,determining
R498 T1034 T1033 prep for,risk
R499 T1035 T1034 pobj BC,for
R500 T1036 T1037 punct [,4
R501 T1037 T1022 parataxis 4,plays
R502 T1038 T1039 punct -,6
R503 T1039 T1037 prep 6,4
R504 T1040 T1037 punct ],4
R505 T1041 T1022 punct .,plays
R506 T1043 T1044 compound Antioxidant,enzymes
R507 T1044 T1045 nsubj enzymes,protect
R508 T1046 T1045 dobj NBEC,protect
R509 T1047 T1045 prep from,protect
R510 T1048 T1049 amod reactive,species
R513 T1051 T1049 acl produced,species
R514 T1052 T1051 agent by,produced
R515 T1053 T1052 pobj interaction,by
R516 T1054 T1053 prep with,interaction
R517 T1055 T1053 cc and,interaction
R518 T1056 T1057 nmod metabolism,xenobiotics
R521 T1059 T1060 amod such,as
R522 T1060 T1057 prep as,xenobiotics
R523 T1061 T1060 pobj pollution,as
R524 T1062 T1061 cc and,pollution
R525 T1063 T1064 compound cigarette,smoke
R526 T1064 T1061 conj smoke,pollution
R527 T1065 T1066 punct [,4
R528 T1066 T1051 parataxis 4,produced
R529 T1067 T1068 punct -,7
R530 T1068 T1066 prep 7,4
R531 T1069 T1066 punct ],4
R532 T1070 T1071 advmod as,as
R535 T1073 T1049 conj those,species
R536 T1074 T1073 acl produced,those
R537 T1075 T1074 agent by,produced
R538 T1076 T1077 amod normal,metabolism
R541 T1079 T1045 punct .,protect
R542 T1081 T1082 amod Reactive,species
R545 T1085 T1086 amod many,reactions
R548 T1088 T1086 prep including,reactions
R549 T1089 T1088 pobj denaturation,including
R550 T1090 T1089 prep of,denaturation
R551 T1091 T1090 pobj proteins,of
R552 T1092 T1089 punct ", ",denaturation
R553 T1093 T1089 conj cross-linking,denaturation
R554 T1094 T1093 prep of,cross-linking
R555 T1095 T1094 pobj lipids,of
R556 T1096 T1095 cc and,lipids
R557 T1097 T1095 conj proteins,lipids
R558 T1098 T1093 cc and,cross-linking
R559 T1099 T1093 conj modification,cross-linking
R560 T1100 T1099 prep of,modification
R561 T1101 T1102 amod nucleic,acid
R562 T1102 T1103 compound acid,bases
R563 T1103 T1100 pobj bases,of
R564 T1104 T1086 punct ", ",reactions
R565 T1105 T1106 dep which,lead
R568 T1108 T1106 prep to,lead
R569 T1109 T1108 pobj cancer,to
R570 T1110 T1111 punct [,7
R571 T1111 T1084 parataxis 7,cause
R572 T1112 T1111 punct ],7
R573 T1113 T1084 punct .,cause
R574 T1115 T1116 compound DNA,repair
R575 T1116 T1117 compound repair,enzymes
R576 T1117 T1118 nsubj enzymes,repair
R577 T1119 T1120 det the,damage
R580 T1122 T1120 prep to,damage
R581 T1123 T1122 pobj DNA,to
R582 T1124 T1120 acl caused,damage
R583 T1125 T1124 agent by,caused
R584 T1126 T1127 compound oxidant,stress
R585 T1127 T1125 pobj stress,by
R586 T1128 T1129 advmod as,as
R589 T1131 T1132 amod other,stresses
R590 T1132 T1127 conj stresses,stress
R591 T1133 T1120 punct ", ",damage
R592 T1134 T1120 prep including,damage
R593 T1135 T1136 amod bulky,adducts
R594 T1136 T1134 pobj adducts,including
R595 T1137 T1136 acl derived,adducts
R596 T1138 T1137 prep from,derived
R597 T1139 T1138 pobj carcinogens,from
R598 T1140 T1139 prep in,carcinogens
R599 T1141 T1142 compound cigarette,smoke
R600 T1142 T1140 pobj smoke,in
R601 T1143 T1144 punct [,8
R602 T1144 T1118 parataxis 8,repair
R603 T1145 T1144 punct ],8
R604 T1146 T1118 punct .,repair

2_test

Id Subject Object Predicate Lexical cue
16255782-14705493-8759910 243-244 14705493 denotes 1
16255782-16088748-8759910 243-244 16088748 denotes 1
16255782-8242618-8759911 545-546 8242618 denotes 4
16255782-1339300-8759911 545-546 1339300 denotes 4
16255782-1486868-8759911 545-546 1486868 denotes 4
16255782-8242618-8759912 711-712 8242618 denotes 4
16255782-1339300-8759912 711-712 1339300 denotes 4
16255782-1486868-8759912 711-712 1486868 denotes 4
16255782-6290784-8759912 711-712 6290784 denotes 4
16255782-6290784-8759913 966-967 6290784 denotes 7
16255782-8533150-8759914 1144-1145 8533150 denotes 8

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T774 52-57 GO:0016265 denotes death
T775 106-112 GO:0016265 denotes deaths
T776 249-260 CHEBI_GO_EXT:antioxidant denotes Antioxidant
T777 253-260 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T778 265-268 CHEBI_SO_EXT:DNA denotes DNA
T779 265-275 GO:0006281 denotes DNA repair
T780 276-283 CHEBI_GO_SO_EXT:enzyme denotes enzymes
T781 348-357 GO:0010467 denotes expressed
T782 376-381 CL_GO_EXT:cell denotes cells
T783 397-417 UBERON:0002031 denotes bronchial epithelial
T784 397-423 CL:0002328 denotes bronchial epithelial cells
T785 418-423 CL_GO_EXT:cell denotes cells
T786 452-462 NCBITaxon:1 denotes individual
T787 498-503 SO_EXT:0000704 denotes genes
T788 551-562 CHEBI_GO_EXT:antioxidant denotes Antioxidant
T789 555-562 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T790 563-570 CHEBI_GO_SO_EXT:enzyme denotes enzymes
T791 589-612 CHEBI:26523 denotes reactive oxygen species
T792 646-671 GO:0006805 denotes metabolism of xenobiotics
T793 660-671 CHEBI_EXT:35703 denotes xenobiotics
T794 752-760 CL_GO_EXT:cell denotes cellular
T795 752-771 GO:0044237 denotes cellular metabolism
T796 773-796 CHEBI:26523 denotes Reactive oxygen species
T797 837-861 GO:0030164 denotes denaturation of proteins
T798 853-861 CHEBI_PR_EXT:protein denotes proteins
T799 869-876 SO_EXT:sequence_fusion_process denotes linking
T800 880-886 CHEBI:18059 denotes lipids
T801 891-899 CHEBI_PR_EXT:protein denotes proteins
T802 904-916 SO_EXT:sequence_alteration_entity_or_process denotes modification
T803 920-927 GO:0005634 denotes nucleic
T804 920-938 CHEBI_SO_EXT:base denotes nucleic acid bases
T805 970-973 CHEBI_SO_EXT:DNA denotes DNA
T806 970-980 GO:0006281 denotes DNA repair
T807 981-988 CHEBI_GO_SO_EXT:enzyme denotes enzymes
T808 989-995 GO:0006281 denotes repair
T809 1019-1022 CHEBI_SO_EXT:DNA denotes DNA
T810 1033-1040 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T811 1112-1123 CHEBI_EXT:50903 denotes carcinogens

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T869 52-57 GO:0016265 denotes death
T870 106-112 GO:0016265 denotes deaths
T871 265-275 GO:0006281 denotes DNA repair
T872 348-357 GO:0010467 denotes expressed
T873 397-417 UBERON:0002031 denotes bronchial epithelial
T874 397-423 CL:0002328 denotes bronchial epithelial cells
T875 452-462 NCBITaxon:1 denotes individual
T876 498-503 SO:0000704 denotes genes
T877 589-612 CHEBI:26523 denotes reactive oxygen species
T878 646-671 GO:0006805 denotes metabolism of xenobiotics
T879 660-671 CHEBI:35703 denotes xenobiotics
T880 752-771 GO:0044237 denotes cellular metabolism
T881 773-796 CHEBI:26523 denotes Reactive oxygen species
T882 837-861 GO:0030164 denotes denaturation of proteins
T883 880-886 CHEBI:18059 denotes lipids
T884 920-927 GO:0005634 denotes nucleic
T885 970-980 GO:0006281 denotes DNA repair
T886 989-995 GO:0006281 denotes repair
T887 1112-1123 CHEBI:50903 denotes carcinogens