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PMC:1310620 / 185-1017 JSONTXT

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Id Subject Object Predicate Lexical cue
T292 0-9 NN denotes Cigarette
T293 10-17 NN denotes smoking
T294 18-20 VBZ denotes is
T295 21-24 DT denotes the
T296 33-38 NN denotes cause
T297 25-32 JJ denotes primary
T298 39-41 IN denotes of
T299 42-54 JJ denotes bronchogenic
T300 55-64 NN denotes carcinoma
T301 65-66 -LRB- denotes (
T302 66-68 NN denotes BC
T303 68-69 -RRB- denotes )
T304 69-71 , denotes ,
T305 71-74 CC denotes yet
T306 75-79 RB denotes only
T307 83-85 CD denotes 15
T308 80-82 CD denotes 10
T309 82-83 SYM denotes –
T310 85-86 NN denotes %
T311 104-111 VBP denotes develop
T312 87-89 IN denotes of
T313 90-95 JJ denotes heavy
T314 96-103 NNS denotes smokers
T315 112-114 NN denotes BC
T316 115-118 CC denotes and
T317 119-121 PRP denotes it
T318 122-124 VBZ denotes is
T319 125-131 JJ denotes likely
T320 132-136 IN denotes that
T321 185-195 VBN denotes determined
T322 137-141 DT denotes this
T323 142-151 NN denotes variation
T324 152-154 IN denotes in
T325 155-159 NN denotes risk
T326 160-162 VBZ denotes is
T327 162-164 , denotes ,
T328 164-166 IN denotes in
T329 167-171 JJ denotes part
T330 171-173 , denotes ,
T331 173-184 RB denotes genetically
T332 195-196 . denotes .
T333 196-381 sentence denotes We previously reported a set of antioxidant genes for which transcript abundance was lower in normal bronchial epithelial cells (NBEC) of BC individuals compared to non-BC individuals.
T334 197-199 PRP denotes We
T335 211-219 VBD denotes reported
T336 200-210 RB denotes previously
T337 220-221 DT denotes a
T338 222-225 NN denotes set
T339 226-228 IN denotes of
T340 229-240 NN denotes antioxidant
T341 241-246 NNS denotes genes
T342 247-250 IN denotes for
T343 278-281 VBD denotes was
T344 251-256 WDT denotes which
T345 257-267 NN denotes transcript
T346 268-277 NN denotes abundance
T347 282-287 JJR denotes lower
T348 288-290 IN denotes in
T349 291-297 JJ denotes normal
T350 319-324 NNS denotes cells
T351 298-307 JJ denotes bronchial
T352 308-318 JJ denotes epithelial
T353 325-326 -LRB- denotes (
T354 326-330 NN denotes NBEC
T355 330-331 -RRB- denotes )
T356 332-334 IN denotes of
T357 335-337 NN denotes BC
T358 338-349 NNS denotes individuals
T359 350-358 VBN denotes compared
T360 359-361 IN denotes to
T361 362-368 JJ denotes non-BC
T362 369-380 NNS denotes individuals
T363 380-381 . denotes .
T364 381-533 sentence denotes In unpublished studies of the same NBEC samples, transcript abundance values for several DNA repair genes were correlated with these antioxidant genes.
T365 382-384 IN denotes In
T366 493-503 VBN denotes correlated
T367 385-396 JJ denotes unpublished
T368 397-404 NNS denotes studies
T369 405-407 IN denotes of
T370 408-411 DT denotes the
T371 422-429 NNS denotes samples
T372 412-416 JJ denotes same
T373 417-421 NN denotes NBEC
T374 429-431 , denotes ,
T375 431-441 NN denotes transcript
T376 452-458 NNS denotes values
T377 442-451 NN denotes abundance
T378 459-462 IN denotes for
T379 463-470 JJ denotes several
T380 482-487 NNS denotes genes
T381 471-474 NN denotes DNA
T382 475-481 NN denotes repair
T383 488-492 VBD denotes were
T384 504-508 IN denotes with
T385 509-514 DT denotes these
T386 527-532 NNS denotes genes
T387 515-526 NN denotes antioxidant
T388 532-533 . denotes .
T389 533-832 sentence denotes From these data, we hypothesized that antioxidant and DNA repair genes are co-regulated by one or more transcription factors and that inter-individual variation in expression and/or function of one or more of these transcription factors is responsible for inter-individual variation in risk for BC.
T390 534-538 IN denotes From
T391 554-566 VBD denotes hypothesized
T392 539-544 DT denotes these
T393 545-549 NNS denotes data
T394 549-551 , denotes ,
T395 551-553 PRP denotes we
T396 567-571 IN denotes that
T397 609-621 VBN denotes co-regulated
T398 572-583 NN denotes antioxidant
T399 599-604 NNS denotes genes
T400 584-587 CC denotes and
T401 588-591 NN denotes DNA
T402 592-598 NN denotes repair
T403 605-608 VBP denotes are
T404 622-624 IN denotes by
T405 625-628 CD denotes one
T406 651-658 NNS denotes factors
T407 629-631 CC denotes or
T408 632-636 JJR denotes more
T409 637-650 NN denotes transcription
T410 659-662 CC denotes and
T411 663-667 IN denotes that
T412 771-773 VBZ denotes is
T413 668-684 JJ denotes inter-individual
T414 685-694 NN denotes variation
T415 695-697 IN denotes in
T416 698-708 NN denotes expression
T417 709-712 CC denotes and
T418 712-713 HYPH denotes /
T419 713-715 CC denotes or
T420 716-724 NN denotes function
T421 725-727 IN denotes of
T422 728-731 CD denotes one
T423 732-734 CC denotes or
T424 735-739 JJR denotes more
T425 740-742 IN denotes of
T426 743-748 DT denotes these
T427 763-770 NNS denotes factors
T428 749-762 NN denotes transcription
T429 774-785 JJ denotes responsible
T430 786-789 IN denotes for
T431 790-806 JJ denotes inter-individual
T432 807-816 NN denotes variation
T433 817-819 IN denotes in
T434 820-824 NN denotes risk
T435 825-828 IN denotes for
T436 829-831 NN denotes BC
T437 831-832 . denotes .
R94 T370 T371 det the,samples
R95 T371 T369 pobj samples,of
R21 T292 T293 compound Cigarette,smoking
R22 T293 T294 nsubj smoking,is
R23 T295 T296 det the,cause
R24 T296 T294 attr cause,is
R26 T298 T296 prep of,cause
R27 T299 T300 amod bronchogenic,carcinoma
R28 T300 T298 pobj carcinoma,of
R29 T301 T300 punct (,carcinoma
R30 T302 T300 appos BC,carcinoma
R31 T303 T294 punct ),is
R32 T304 T294 punct ", ",is
R33 T305 T294 cc yet,is
R34 T306 T307 advmod only,15
R35 T307 T310 nummod 15,%
R38 T310 T311 nsubj %,develop
R39 T311 T294 conj develop,is
R43 T315 T311 dobj BC,develop
R44 T316 T311 cc and,develop
R45 T317 T318 nsubj it,is
R46 T318 T311 conj is,develop
R47 T319 T318 acomp likely,is
R48 T320 T321 mark that,determined
R49 T321 T318 ccomp determined,is
R60 T332 T311 punct .,develop
R61 T334 T335 nsubj We,reported
R62 T336 T335 advmod previously,reported
R63 T337 T338 det a,set
R64 T338 T335 dobj set,reported
R65 T339 T338 prep of,set
R66 T340 T341 compound antioxidant,genes
R67 T341 T339 pobj genes,of
R68 T342 T343 prep for,was
R69 T343 T341 relcl was,genes
R73 T347 T343 acomp lower,was
R74 T348 T343 prep in,was
R75 T349 T350 amod normal,cells
R76 T350 T348 pobj cells,in
R79 T353 T350 punct (,cells
R80 T354 T350 appos NBEC,cells
R81 T355 T350 punct ),cells
R82 T356 T350 prep of,cells
R83 T357 T358 compound BC,individuals
R84 T358 T356 pobj individuals,of
R85 T359 T343 prep compared,was
R86 T360 T359 prep to,compared
R87 T361 T362 amod non-BC,individuals
R88 T362 T360 pobj individuals,to
R89 T363 T335 punct .,reported
R90 T365 T366 prep In,correlated
R91 T367 T368 amod unpublished,studies
R92 T368 T365 pobj studies,In
R93 T369 T368 prep of,studies
R98 T374 T366 punct ", ",correlated
R99 T375 T376 compound transcript,values
R100 T376 T366 nsubjpass values,correlated
R102 T378 T376 prep for,values
R103 T379 T380 amod several,genes
R104 T380 T378 pobj genes,for
R107 T383 T366 auxpass were,correlated
R108 T384 T366 prep with,correlated
R109 T385 T386 det these,genes
R110 T386 T384 pobj genes,with
R112 T388 T366 punct .,correlated
R113 T390 T391 prep From,hypothesized
R114 T392 T393 det these,data
R115 T393 T390 pobj data,From
R116 T394 T391 punct ", ",hypothesized
R117 T395 T391 nsubj we,hypothesized
R118 T396 T397 mark that,co-regulated
R119 T397 T391 advcl co-regulated,hypothesized
R121 T399 T397 nsubjpass genes,co-regulated
R122 T400 T398 cc and,antioxidant
R123 T401 T402 compound DNA,repair
R124 T402 T398 conj repair,antioxidant
R126 T404 T397 agent by,co-regulated
R127 T405 T406 nummod one,factors
R128 T406 T404 pobj factors,by
R132 T410 T397 cc and,co-regulated
R133 T411 T412 mark that,is
R134 T412 T397 conj is,co-regulated
R149 T427 T425 pobj factors,of
R150 T428 T427 compound transcription,factors
R151 T429 T412 acomp responsible,is
R152 T430 T429 prep for,responsible
R153 T431 T432 amod inter-individual,variation
R154 T432 T430 pobj variation,for
R155 T433 T432 prep in,variation
R156 T434 T433 pobj risk,in
R157 T435 T434 prep for,risk
R158 T436 T435 pobj BC,for
R159 T437 T391 punct .,hypothesized
R25 T297 T296 amod primary,cause
R36 T308 T307 quantmod 10,15
R37 T309 T307 punct –,15
R40 T312 T310 prep of,%
R41 T313 T314 amod heavy,smokers
R42 T314 T312 pobj smokers,of
R50 T322 T323 det this,variation
R51 T323 T321 nsubjpass variation,determined
R52 T324 T323 prep in,variation
R53 T325 T324 pobj risk,in
R54 T326 T321 auxpass is,determined
R55 T327 T321 punct ", ",determined
R56 T328 T321 prep in,determined
R57 T329 T328 amod part,in
R58 T330 T321 punct ", ",determined
R59 T331 T321 advmod genetically,determined
R70 T344 T342 pobj which,for
R71 T345 T346 compound transcript,abundance
R72 T346 T343 nsubj abundance,was
R77 T351 T350 amod bronchial,cells
R78 T352 T350 amod epithelial,cells
R96 T372 T371 amod same,samples
R97 T373 T371 compound NBEC,samples
R101 T377 T376 compound abundance,values
R105 T381 T382 compound DNA,repair
R106 T382 T380 compound repair,genes
R111 T387 T386 compound antioxidant,genes
R120 T398 T399 nmod antioxidant,genes
R125 T403 T397 auxpass are,co-regulated
R129 T407 T405 cc or,one
R130 T408 T405 conj more,one
R131 T409 T406 compound transcription,factors
R135 T413 T414 amod inter-individual,variation
R136 T414 T412 nsubj variation,is
R137 T415 T414 prep in,variation
R138 T416 T415 pobj expression,in
R139 T417 T416 cc and,expression
R140 T418 T417 punct /,and
R141 T419 T417 cc or,and
R142 T420 T416 conj function,expression
R143 T421 T416 prep of,expression
R144 T422 T421 pobj one,of
R145 T423 T422 cc or,one
R146 T424 T422 conj more,one
R147 T425 T422 prep of,one
R148 T426 T427 det these,factors

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T109 173-184 SO_EXT:0000704 denotes genetically
T110 229-240 CHEBI_GO_EXT:antioxidant denotes antioxidant
T111 233-240 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T112 241-246 SO_EXT:0000704 denotes genes
T113 257-267 SO_EXT:0000673 denotes transcript
T114 298-318 UBERON:0002031 denotes bronchial epithelial
T115 298-324 CL:0002328 denotes bronchial epithelial cells
T116 319-324 CL_GO_EXT:cell denotes cells
T117 338-349 NCBITaxon:1 denotes individuals
T118 369-380 NCBITaxon:1 denotes individuals
T119 431-441 SO_EXT:0000673 denotes transcript
T120 471-474 CHEBI_SO_EXT:DNA denotes DNA
T121 471-481 GO:0006281 denotes DNA repair
T122 482-487 SO_EXT:0000704 denotes genes
T123 515-526 CHEBI_GO_EXT:antioxidant denotes antioxidant
T124 519-526 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T125 527-532 SO_EXT:0000704 denotes genes
T126 572-583 CHEBI_GO_EXT:antioxidant denotes antioxidant
T127 576-583 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T128 588-591 CHEBI_SO_EXT:DNA denotes DNA
T129 588-598 GO:0006281 denotes DNA repair
T130 599-604 SO_EXT:0000704 denotes genes
T131 612-621 GO:0065007 denotes regulated
T132 637-650 GO_EXT:transcription denotes transcription
T133 637-658 GO_EXT:transcription_factor denotes transcription factors
T134 674-684 NCBITaxon:1 denotes individual
T135 698-708 GO:0010467 denotes expression
T136 749-762 GO_EXT:transcription denotes transcription
T137 749-770 GO_EXT:transcription_factor denotes transcription factors
T138 796-806 NCBITaxon:1 denotes individual

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T210 173-184 SO:0000704 denotes genetically
T211 241-246 SO:0000704 denotes genes
T212 257-267 SO:0000673 denotes transcript
T213 298-318 UBERON:0002031 denotes bronchial epithelial
T214 298-324 CL:0002328 denotes bronchial epithelial cells
T215 338-349 NCBITaxon:1 denotes individuals
T216 369-380 NCBITaxon:1 denotes individuals
T217 431-441 SO:0000673 denotes transcript
T218 471-481 GO:0006281 denotes DNA repair
T219 482-487 SO:0000704 denotes genes
T220 527-532 SO:0000704 denotes genes
T221 588-598 GO:0006281 denotes DNA repair
T222 599-604 SO:0000704 denotes genes
T223 612-621 GO:0065007 denotes regulated
T224 674-684 NCBITaxon:1 denotes individual
T225 698-708 GO:0010467 denotes expression
T226 796-806 NCBITaxon:1 denotes individual