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PMC:1310620 / 14243-15195 JSONTXT

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Id Subject Object Predicate Lexical cue
T4306 0-5 DT denotes These
T4307 6-13 NNS denotes results
T4308 14-21 VBP denotes support
T4309 22-25 DT denotes the
T4310 26-36 NN denotes hypothesis
T4311 37-41 IN denotes that
T4312 133-142 VBN denotes regulated
T4313 42-46 DT denotes each
T4314 47-49 IN denotes of
T4315 50-53 DT denotes the
T4316 80-85 NNS denotes genes
T4317 54-65 NN denotes antioxidant
T4318 66-68 CC denotes or
T4319 69-72 NN denotes DNA
T4320 73-79 NN denotes repair
T4321 86-96 VBN denotes correlated
T4322 97-101 IN denotes with
T4323 102-107 NN denotes CEBPG
T4324 108-110 IN denotes in
T4325 111-117 JJ denotes non-BC
T4326 118-129 NNS denotes individuals
T4327 130-132 VBZ denotes is
T4328 143-145 IN denotes by
T4329 146-151 NN denotes CEBPG
T4330 151-152 . denotes .
T4331 152-215 sentence denotes This is supported by the specificity of the CEBPG correlation.
T4332 153-157 DT denotes This
T4333 161-170 VBN denotes supported
T4334 158-160 VBZ denotes is
T4335 171-173 IN denotes by
T4336 174-177 DT denotes the
T4337 178-189 NN denotes specificity
T4338 190-192 IN denotes of
T4339 193-196 DT denotes the
T4340 203-214 NN denotes correlation
T4341 197-202 NN denotes CEBPG
T4342 214-215 . denotes .
T4343 215-339 sentence denotes That is, there was lack of correlation between any of the other five transcription factors assessed and these target genes.
T4344 216-220 RB denotes That
T4345 221-223 RB denotes is
T4346 231-234 VBD denotes was
T4347 223-225 , denotes ,
T4348 225-230 EX denotes there
T4349 235-239 NN denotes lack
T4350 240-242 IN denotes of
T4351 243-254 NN denotes correlation
T4352 255-262 IN denotes between
T4353 263-266 DT denotes any
T4354 267-269 IN denotes of
T4355 270-273 DT denotes the
T4356 299-306 NNS denotes factors
T4357 274-279 JJ denotes other
T4358 280-284 CD denotes five
T4359 285-298 NN denotes transcription
T4360 307-315 VBN denotes assessed
T4361 316-319 CC denotes and
T4362 320-325 DT denotes these
T4363 333-338 NNS denotes genes
T4364 326-332 NN denotes target
T4365 338-339 . denotes .
T4366 339-552 sentence denotes Of particular note is the lack of correlation of the target genes with CEBPB, which binds to the same recognition site as CEBPG, and shares its recognition site within each of the antioxidant or DNA repair genes.
T4367 340-342 IN denotes Of
T4368 359-361 VBZ denotes is
T4369 343-353 JJ denotes particular
T4370 354-358 NN denotes note
T4371 362-365 DT denotes the
T4372 366-370 NN denotes lack
T4373 371-373 IN denotes of
T4374 374-385 NN denotes correlation
T4375 386-388 IN denotes of
T4376 389-392 DT denotes the
T4377 400-405 NNS denotes genes
T4378 393-399 NN denotes target
T4379 406-410 IN denotes with
T4380 411-416 NN denotes CEBPB
T4381 416-418 , denotes ,
T4382 418-423 WDT denotes which
T4383 424-429 VBZ denotes binds
T4384 430-432 IN denotes to
T4385 433-436 DT denotes the
T4386 454-458 NN denotes site
T4387 437-441 JJ denotes same
T4388 442-453 NN denotes recognition
T4389 459-461 IN denotes as
T4390 462-467 NN denotes CEBPG
T4391 467-469 , denotes ,
T4392 469-472 CC denotes and
T4393 473-479 VBZ denotes shares
T4394 480-483 PRP$ denotes its
T4395 496-500 NN denotes site
T4396 484-495 NN denotes recognition
T4397 501-507 IN denotes within
T4398 508-512 DT denotes each
T4399 513-515 IN denotes of
T4400 516-519 DT denotes the
T4401 546-551 NNS denotes genes
T4402 520-531 NN denotes antioxidant
T4403 532-534 CC denotes or
T4404 535-538 NN denotes DNA
T4405 539-545 NN denotes repair
T4406 551-552 . denotes .
T4407 552-695 sentence denotes However, there are alternative explanations for the observed correlation of CEBPG with antioxidant and DNA repair genes in non-BC individuals.
T4408 553-560 RB denotes However
T4409 568-571 VBP denotes are
T4410 560-562 , denotes ,
T4411 562-567 EX denotes there
T4412 572-583 JJ denotes alternative
T4413 584-596 NNS denotes explanations
T4414 597-600 IN denotes for
T4415 601-604 DT denotes the
T4416 614-625 NN denotes correlation
T4417 605-613 VBN denotes observed
T4418 626-628 IN denotes of
T4419 629-634 NN denotes CEBPG
T4420 635-639 IN denotes with
T4421 640-651 NN denotes antioxidant
T4422 667-672 NNS denotes genes
T4423 652-655 CC denotes and
T4424 656-659 NN denotes DNA
T4425 660-666 NN denotes repair
T4426 673-675 IN denotes in
T4427 676-682 JJ denotes non-BC
T4428 683-694 NNS denotes individuals
T4429 694-695 . denotes .
T4430 695-952 sentence denotes One possibility is that CEBPG and each of the correlated antioxidant or DNA repair genes is regulated by a transcription factor that is as yet undiscovered, and/or has a recognition site that is not yet known and was not in the Genomatix software database.
T4431 696-699 CD denotes One
T4432 700-711 NN denotes possibility
T4433 712-714 VBZ denotes is
T4434 715-719 IN denotes that
T4435 788-797 VBN denotes regulated
T4436 720-725 NN denotes CEBPG
T4437 726-729 CC denotes and
T4438 730-734 DT denotes each
T4439 735-737 IN denotes of
T4440 738-741 DT denotes the
T4441 779-784 NNS denotes genes
T4442 742-752 VBN denotes correlated
T4443 753-764 NN denotes antioxidant
T4444 765-767 CC denotes or
T4445 768-771 NN denotes DNA
T4446 772-778 NN denotes repair
T4447 785-787 VBZ denotes is
T4448 798-800 IN denotes by
T4449 801-802 DT denotes a
T4450 817-823 NN denotes factor
T4451 803-816 NN denotes transcription
T4452 824-828 WDT denotes that
T4453 829-831 VBZ denotes is
T4454 832-834 RB denotes as
T4455 835-838 RB denotes yet
T4456 839-851 JJ denotes undiscovered
T4457 851-853 , denotes ,
T4458 853-856 CC denotes and
T4459 856-857 HYPH denotes /
T4460 857-859 CC denotes or
T4461 860-863 VBZ denotes has
T4462 864-865 DT denotes a
T4463 878-882 NN denotes site
T4464 866-877 NN denotes recognition
T4465 883-887 WDT denotes that
T4466 899-904 VBN denotes known
T4467 888-890 VBZ denotes is
T4468 891-894 RB denotes not
T4469 895-898 RB denotes yet
T4470 905-908 CC denotes and
T4471 909-912 VBD denotes was
T4472 913-916 RB denotes not
T4473 917-919 IN denotes in
T4474 920-923 DT denotes the
T4475 943-951 NN denotes database
T4476 924-933 NNP denotes Genomatix
T4477 934-942 NN denotes software
T4478 951-952 . denotes .
R2424 T4306 T4307 det These,results
R2425 T4307 T4308 nsubj results,support
R2426 T4309 T4310 det the,hypothesis
R2427 T4310 T4308 dobj hypothesis,support
R2428 T4311 T4312 mark that,regulated
R2429 T4312 T4310 acl regulated,hypothesis
R2430 T4313 T4312 nsubjpass each,regulated
R2431 T4314 T4313 prep of,each
R2432 T4315 T4316 det the,genes
R2433 T4316 T4314 pobj genes,of
R2434 T4317 T4316 nmod antioxidant,genes
R2435 T4318 T4317 cc or,antioxidant
R2436 T4319 T4320 compound DNA,repair
R2437 T4320 T4317 conj repair,antioxidant
R2438 T4321 T4316 acl correlated,genes
R2439 T4322 T4321 prep with,correlated
R2440 T4323 T4322 pobj CEBPG,with
R2441 T4324 T4321 prep in,correlated
R2442 T4325 T4326 amod non-BC,individuals
R2443 T4326 T4324 pobj individuals,in
R2444 T4327 T4312 auxpass is,regulated
R2445 T4328 T4312 agent by,regulated
R2446 T4329 T4328 pobj CEBPG,by
R2447 T4330 T4308 punct .,support
R2448 T4332 T4333 nsubjpass This,supported
R2449 T4334 T4333 auxpass is,supported
R2450 T4335 T4333 agent by,supported
R2451 T4336 T4337 det the,specificity
R2452 T4337 T4335 pobj specificity,by
R2453 T4338 T4337 prep of,specificity
R2454 T4339 T4340 det the,correlation
R2455 T4340 T4338 pobj correlation,of
R2456 T4341 T4340 compound CEBPG,correlation
R2457 T4342 T4333 punct .,supported
R2458 T4344 T4345 advmod That,is
R2459 T4345 T4346 advmod is,was
R2460 T4347 T4346 punct ", ",was
R2461 T4348 T4346 expl there,was
R2462 T4349 T4346 attr lack,was
R2463 T4350 T4349 prep of,lack
R2464 T4351 T4350 pobj correlation,of
R2465 T4352 T4351 prep between,correlation
R2466 T4353 T4352 pobj any,between
R2467 T4354 T4353 prep of,any
R2468 T4355 T4356 det the,factors
R2469 T4356 T4354 pobj factors,of
R2470 T4357 T4356 amod other,factors
R2471 T4358 T4356 nummod five,factors
R2472 T4359 T4356 compound transcription,factors
R2473 T4360 T4356 acl assessed,factors
R2474 T4361 T4353 cc and,any
R2475 T4362 T4363 det these,genes
R2476 T4363 T4353 conj genes,any
R2477 T4364 T4363 compound target,genes
R2478 T4365 T4346 punct .,was
R2479 T4367 T4368 prep Of,is
R2480 T4369 T4370 amod particular,note
R2481 T4370 T4367 pobj note,Of
R2482 T4371 T4372 det the,lack
R2483 T4372 T4368 nsubj lack,is
R2484 T4373 T4372 prep of,lack
R2485 T4374 T4373 pobj correlation,of
R2486 T4375 T4374 prep of,correlation
R2487 T4376 T4377 det the,genes
R2488 T4377 T4375 pobj genes,of
R2489 T4378 T4377 compound target,genes
R2490 T4379 T4374 prep with,correlation
R2491 T4380 T4379 pobj CEBPB,with
R2492 T4381 T4380 punct ", ",CEBPB
R2493 T4382 T4383 dep which,binds
R2494 T4383 T4380 relcl binds,CEBPB
R2495 T4384 T4383 prep to,binds
R2496 T4385 T4386 det the,site
R2498 T4387 T4386 amod same,site
R2499 T4388 T4386 compound recognition,site
R2500 T4389 T4386 prep as,site
R2501 T4390 T4389 pobj CEBPG,as
R2502 T4391 T4383 punct ", ",binds
R2503 T4392 T4383 cc and,binds
R2504 T4393 T4383 conj shares,binds
R2505 T4394 T4395 poss its,site
R2506 T4395 T4393 dobj site,shares
R2507 T4396 T4395 compound recognition,site
R2508 T4397 T4393 prep within,shares
R2509 T4398 T4397 pobj each,within
R2510 T4399 T4398 prep of,each
R2511 T4400 T4401 det the,genes
R2512 T4401 T4399 pobj genes,of
R2513 T4402 T4401 nmod antioxidant,genes
R2514 T4403 T4402 cc or,antioxidant
R2515 T4404 T4405 compound DNA,repair
R2516 T4405 T4402 conj repair,antioxidant
R2517 T4406 T4368 punct .,is
R2518 T4408 T4409 advmod However,are
R2519 T4410 T4409 punct ", ",are
R2520 T4411 T4409 expl there,are
R2521 T4412 T4413 amod alternative,explanations
R2522 T4413 T4409 attr explanations,are
R2523 T4414 T4413 prep for,explanations
R2524 T4415 T4416 det the,correlation
R2525 T4416 T4414 pobj correlation,for
R2526 T4417 T4416 amod observed,correlation
R2527 T4418 T4416 prep of,correlation
R2528 T4419 T4418 pobj CEBPG,of
R2529 T4420 T4416 prep with,correlation
R2530 T4421 T4422 nmod antioxidant,genes
R2531 T4422 T4420 pobj genes,with
R2532 T4423 T4421 cc and,antioxidant
R2533 T4424 T4425 compound DNA,repair
R2534 T4425 T4421 conj repair,antioxidant
R2535 T4426 T4416 prep in,correlation
R2536 T4427 T4428 amod non-BC,individuals
R2537 T4428 T4426 pobj individuals,in
R2538 T4429 T4409 punct .,are
R2539 T4431 T4432 nummod One,possibility
R2540 T4432 T4433 nsubj possibility,is
R2541 T4434 T4435 mark that,regulated
R2542 T4435 T4433 ccomp regulated,is
R2543 T4436 T4435 nsubjpass CEBPG,regulated
R2544 T4437 T4436 cc and,CEBPG
R2545 T4438 T4436 conj each,CEBPG
R2546 T4439 T4438 prep of,each
R2547 T4440 T4441 det the,genes
R2548 T4441 T4439 pobj genes,of
R2549 T4442 T4441 amod correlated,genes
R2550 T4443 T4441 nmod antioxidant,genes
R2551 T4444 T4443 cc or,antioxidant
R2552 T4445 T4446 compound DNA,repair
R2553 T4446 T4443 conj repair,antioxidant
R2554 T4447 T4435 auxpass is,regulated
R2555 T4448 T4435 agent by,regulated
R2556 T4449 T4450 det a,factor
R2557 T4450 T4448 pobj factor,by
R2558 T4451 T4450 compound transcription,factor
R2559 T4452 T4453 dep that,is
R2560 T4453 T4450 relcl is,factor
R2561 T4454 T4455 advmod as,yet
R2562 T4455 T4453 advmod yet,is
R2563 T4456 T4453 acomp undiscovered,is
R2564 T4457 T4453 punct ", ",is
R2565 T4458 T4453 cc and,is
R2566 T4459 T4458 punct /,and
R2567 T4460 T4458 cc or,and
R2568 T4461 T4453 conj has,is
R2569 T4462 T4463 det a,site
R2570 T4463 T4461 dobj site,has
R2571 T4464 T4463 compound recognition,site
R2572 T4465 T4466 dep that,known
R2573 T4466 T4463 relcl known,site
R2574 T4467 T4466 auxpass is,known
R2575 T4468 T4466 neg not,known
R2576 T4469 T4466 advmod yet,known
R2577 T4470 T4466 cc and,known
R2578 T4471 T4466 conj was,known
R2579 T4472 T4471 neg not,was
R2580 T4473 T4471 prep in,was
R2581 T4474 T4475 det the,database
R2583 T4476 T4475 compound Genomatix,database
R2584 T4477 T4475 compound software,database
R2585 T4478 T4433 punct .,is
R2497 T4386 T4384 pobj site,to
R2582 T4475 T4473 pobj database,in

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3736 54-65 CHEBI_GO_EXT:antioxidant denotes antioxidant
T3737 58-65 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T3738 69-72 CHEBI_SO_EXT:DNA denotes DNA
T3739 69-79 GO:0006281 denotes DNA repair
T3740 80-85 SO_EXT:0000704 denotes genes
T3741 102-107 PR_EXT:000005311 denotes CEBPG
T3742 118-129 NCBITaxon:1 denotes individuals
T3743 133-142 GO:0065007 denotes regulated
T3744 146-151 PR_EXT:000005311 denotes CEBPG
T3745 197-202 PR_EXT:000005311 denotes CEBPG
T3746 285-298 GO_EXT:transcription denotes transcription
T3747 285-306 GO_EXT:transcription_factor denotes transcription factors
T3748 333-338 SO_EXT:0000704 denotes genes
T3749 400-405 SO_EXT:0000704 denotes genes
T3750 411-416 PR_EXT:000005308 denotes CEBPB
T3751 424-429 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T3752 442-458 SO_EXT:0000409 denotes recognition site
T3753 462-467 PR_EXT:000005311 denotes CEBPG
T3754 484-500 SO_EXT:0000409 denotes recognition site
T3755 520-531 CHEBI_GO_EXT:antioxidant denotes antioxidant
T3756 524-531 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T3757 535-538 CHEBI_SO_EXT:DNA denotes DNA
T3758 535-545 GO:0006281 denotes DNA repair
T3759 546-551 SO_EXT:0000704 denotes genes
T3760 629-634 PR_EXT:000005311 denotes CEBPG
T3761 640-651 CHEBI_GO_EXT:antioxidant denotes antioxidant
T3762 644-651 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T3763 656-659 CHEBI_SO_EXT:DNA denotes DNA
T3764 656-666 GO:0006281 denotes DNA repair
T3765 667-672 SO_EXT:0000704 denotes genes
T3766 683-694 NCBITaxon:1 denotes individuals
T3767 720-725 PR_EXT:000005311 denotes CEBPG
T3768 753-764 CHEBI_GO_EXT:antioxidant denotes antioxidant
T3769 757-764 CHEBI_MOP_EXT:oxidising_agent_or_oxidation denotes oxidant
T3770 768-771 CHEBI_SO_EXT:DNA denotes DNA
T3771 768-778 GO:0006281 denotes DNA repair
T3772 779-784 SO_EXT:0000704 denotes genes
T3773 788-797 GO:0065007 denotes regulated
T3774 803-816 GO_EXT:transcription denotes transcription
T3775 803-823 GO_EXT:transcription_factor denotes transcription factor
T3776 866-882 SO_EXT:0000409 denotes recognition site

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4016 69-79 GO:0006281 denotes DNA repair
T4017 80-85 SO:0000704 denotes genes
T4018 102-107 PR:000005311 denotes CEBPG
T4019 118-129 NCBITaxon:1 denotes individuals
T4020 133-142 GO:0065007 denotes regulated
T4021 146-151 PR:000005311 denotes CEBPG
T4022 197-202 PR:000005311 denotes CEBPG
T4023 333-338 SO:0000704 denotes genes
T4024 400-405 SO:0000704 denotes genes
T4025 411-416 PR:000005308 denotes CEBPB
T4026 442-458 SO:0000409 denotes recognition site
T4027 462-467 PR:000005311 denotes CEBPG
T4028 484-500 SO:0000409 denotes recognition site
T4029 535-545 GO:0006281 denotes DNA repair
T4030 546-551 SO:0000704 denotes genes
T4031 629-634 PR:000005311 denotes CEBPG
T4032 656-666 GO:0006281 denotes DNA repair
T4033 667-672 SO:0000704 denotes genes
T4034 683-694 NCBITaxon:1 denotes individuals
T4035 720-725 PR:000005311 denotes CEBPG
T4036 768-778 GO:0006281 denotes DNA repair
T4037 779-784 SO:0000704 denotes genes
T4038 788-797 GO:0065007 denotes regulated
T4039 866-882 SO:0000409 denotes recognition site