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PMC:1255741 / 4312-4638 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1216 86-92 RB denotes solely
T1196 0-326 sentence denotes Notably, the normally low Ca2+ permeability of AMPA channels in principal neurons is solely mediated by GluR-B, due to a unique arginine residue (R587) in the functionally critical glutamine/arginine (Q/R) site of the pore-forming segment M2 [44,47,48], resulting from RNA editing of GluR-B pre-mRNA ([49]; reviewed in [50]).
T1197 1-8 RB denotes Notably
T1198 93-101 VBN denotes mediated
T1199 8-10 , denotes ,
T1200 10-13 DT denotes the
T1201 32-44 NN denotes permeability
T1202 14-22 RB denotes normally
T1203 23-26 JJ denotes low
T1204 27-30 NN denotes Ca2
T1205 30-31 SYM denotes +
T1206 45-47 IN denotes of
T1207 48-52 NN denotes AMPA
T1208 53-61 NNS denotes channels
T1209 173-181 JJ denotes critical
T1210 62-64 IN denotes in
T1212 65-74 JJ denotes principal
T1214 75-82 NNS denotes neurons
T1215 83-85 VBZ denotes is
T1217 102-104 IN denotes by
T1219 105-109 NN denotes GluR
T1220 110-111 NN denotes B
T1221 109-110 HYPH denotes -
T1222 111-113 , denotes ,
T1224 113-116 IN denotes due
T1225 117-119 IN denotes to
T1227 120-121 DT denotes a
T1228 138-145 NN denotes residue
T1229 122-128 JJ denotes unique
T1230 129-137 NN denotes arginine
T1231 146-147 -LRB- denotes (
T1232 147-151 NN denotes R587
T1233 151-152 -RRB- denotes )
T1234 153-155 IN denotes in
T1235 156-159 DT denotes the
T1236 207-211 NN denotes site
T1237 160-172 RB denotes functionally
T1238 182-191 NN denotes glutamine
T1239 192-200 NN denotes arginine
T1240 191-192 HYPH denotes /
T1241 201-202 -LRB- denotes (
T1242 204-205 NN denotes R
T1243 202-203 NN denotes Q
T1244 203-204 HYPH denotes /
T1245 205-206 -RRB- denotes )
T1246 212-214 IN denotes of
T1247 215-218 DT denotes the
T1248 240-242 NN denotes M2
T1249 219-223 NN denotes pore
T1250 224-231 VBG denotes forming
T1251 223-224 HYPH denotes -
T1252 232-239 NN denotes segment
T1253 243-244 -LRB- denotes [
T1254 250-252 CD denotes 48
T1255 244-246 CD denotes 44
T1256 246-247 , denotes ,
T1257 247-249 CD denotes 47
T1258 249-250 , denotes ,
T1259 252-253 -RRB- denotes ]
T1260 253-255 , denotes ,
T1261 255-264 VBG denotes resulting
T1262 265-269 IN denotes from
T1263 270-273 NN denotes RNA
T1264 274-281 NN denotes editing
T1265 282-284 IN denotes of
T1266 285-289 NN denotes GluR
T1267 290-291 NN denotes B
T1268 289-290 HYPH denotes -
T1269 292-300 NN denotes pre-mRNA
T1270 301-302 -LRB- denotes (
T1271 303-305 CD denotes 49
T1272 302-303 -LRB- denotes [
T1273 305-306 -RRB- denotes ]
T1274 306-307 : denotes ;
T1275 308-316 VBN denotes reviewed
T1276 317-319 IN denotes in
T1277 320-321 -LRB- denotes [
T1278 321-323 CD denotes 50
T1279 323-324 -RRB- denotes ]
T1280 324-325 -RRB- denotes )
T1281 325-326 . denotes .
R749 T1201 T1198 nsubjpass permeability,mediated
R750 T1200 T1201 det the,permeability
R753 T1202 T1203 advmod normally,low
R754 T1206 T1201 prep of,permeability
R755 T1207 T1208 compound AMPA,channels
R756 T1205 T1204 punct +,Ca2
R757 T1209 T1236 amod critical,site
R760 T1208 T1206 pobj channels,of
R761 T1214 T1210 pobj neurons,in
R762 T1215 T1198 auxpass is,mediated
R763 T1212 T1214 amod principal,neurons
R764 T1216 T1198 advmod solely,mediated
R765 T1217 T1198 agent by,mediated
R768 T1220 T1217 pobj B,by
R769 T1221 T1220 punct -,B
R770 T1219 T1220 compound GluR,B
R772 T1225 T1224 pcomp to,due
R773 T1222 T1198 punct ", ",mediated
R774 T1227 T1228 det a,residue
R775 T1224 T1198 prep due,mediated
R776 T1228 T1224 pobj residue,due
R778 T1230 T1228 compound arginine,residue
R779 T1231 T1232 punct (,R587
R780 T1229 T1228 amod unique,residue
R781 T1233 T1232 punct ),R587
R782 T1234 T1228 prep in,residue
R783 T1235 T1236 det the,site
R784 T1232 T1228 parataxis R587,residue
R785 T1237 T1209 advmod functionally,critical
R786 T1239 T1236 nmod arginine,site
R787 T1236 T1234 pobj site,in
R788 T1238 T1239 nmod glutamine,arginine
R789 T1241 T1242 punct (,R
R790 T1242 T1236 parataxis R,site
R791 T1240 T1239 punct /,arginine
R792 T1244 T1242 punct /,R
R793 T1245 T1242 punct ),R
R794 T1243 T1242 compound Q,R
R795 T1247 T1248 det the,M2
R797 T1246 T1236 prep of,site
R798 T1250 T1248 amod forming,M2
R799 T1249 T1250 npadvmod pore,forming
R800 T1252 T1248 compound segment,M2
R801 T1251 T1250 punct -,forming
R803 T1253 T1254 punct [,48
R804 T1256 T1254 punct ",",48
R805 T1257 T1254 nummod 47,48
R806 T1255 T1254 nummod 44,48
R807 T1259 T1254 punct ],48
R808 T1260 T1228 punct ", ",residue
R809 T1258 T1254 punct ",",48
R810 T1262 T1261 prep from,resulting
R811 T1263 T1264 compound RNA,editing
R812 T1264 T1262 pobj editing,from
R813 T1261 T1228 acl resulting,residue
R814 T1266 T1267 compound GluR,B
R815 T1267 T1269 compound B,pre-mRNA
R816 T1265 T1264 prep of,editing
R817 T1269 T1265 pobj pre-mRNA,of
R818 T1270 T1271 punct (,49
R819 T1268 T1267 punct -,B
R820 T1272 T1271 punct [,49
R821 T1273 T1271 punct ],49
R822 T1271 T1198 parataxis 49,mediated
R823 T1275 T1271 advcl reviewed,49
R824 T1276 T1275 prep in,reviewed
R825 T1274 T1271 punct ;,49
R826 T1278 T1276 pobj 50,in
R827 T1279 T1271 punct ],49
R828 T1280 T1271 punct ),49
R829 T1281 T1198 punct .,mediated
R830 T1277 T1276 punct [,in
R747 T1197 T1198 advmod Notably,mediated
R748 T1199 T1198 punct ", ",mediated
R751 T1203 T1201 amod low,permeability
R752 T1204 T1201 nmod Ca2,permeability
R758 T1210 T1201 prep in,permeability
R796 T1248 T1246 pobj M2,of
R802 T1254 T1236 parataxis 48,site

2_test

Id Subject Object Predicate Lexical cue
16216087-7619522-84723711 244-246 7619522 denotes 44
16216087-1653450-84723712 247-249 1653450 denotes 47
16216087-1370372-84723713 250-252 1370372 denotes 48
16216087-1717158-84723714 303-305 1717158 denotes 49
16216087-9651532-84723715 321-323 9651532 denotes 50
T93354 244-246 7619522 denotes 44
T2986 247-249 1653450 denotes 47
T89342 250-252 1370372 denotes 48
T31581 303-305 1717158 denotes 49
T20633 321-323 9651532 denotes 50

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T2130 27-31 CHEBI:29108 denotes Ca2+
T2131 48-52 CHEBI:34018 denotes AMPA
T2132 53-61 GO_EXT:0015267 denotes channels
T2133 75-82 CL:0000540 denotes neurons
T2134 105-109 GO_EXT:0008066 denotes GluR
T2135 105-111 PR_EXT:000008234 denotes GluR-B
T2136 129-137 CHEBI_SO_EXT:arginine denotes arginine
T2137 138-145 CHEBI_EXT:residue denotes residue
T2138 182-191 CHEBI_SO_EXT:glutamine denotes glutamine
T2139 192-200 CHEBI_SO_EXT:arginine denotes arginine
T2140 202-203 CHEBI_SO_EXT:glutamine denotes Q
T2141 204-205 CHEBI_SO_EXT:arginine denotes R
T2142 219-223 GO_EXT:0015267 denotes pore
T2143 270-273 CHEBI_SO_EXT:RNA denotes RNA
T2144 270-281 GO:0006396 denotes RNA editing
T2145 274-281 SO_EXT:sequence_alteration_process denotes editing
T2146 285-289 GO_EXT:0008066 denotes GluR
T2147 285-291 PR_EXT:000008234 denotes GluR-B
T2148 292-300 SO_EXT:0000932 denotes pre-mRNA
T2149 296-300 CHEBI_SO_EXT:mRNA denotes mRNA

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1960 27-31 CHEBI:29108 denotes Ca2+
T1961 48-52 CHEBI:34018 denotes AMPA
T1962 75-82 CL:0000540 denotes neurons
T1963 105-111 PR:000008234 denotes GluR-B
T1964 270-281 GO:0006396 denotes RNA editing
T1965 285-291 PR:000008234 denotes GluR-B
T1966 292-300 SO:0000932 denotes pre-mRNA