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PMC:1253828 / 21566-23118 JSONTXT

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Id Subject Object Predicate Lexical cue
T6587 0-7 NN denotes Cadmium
T6588 8-16 NN denotes response
T6589 26-33 VBZ denotes depends
T6590 17-19 IN denotes of
T6591 20-25 NN denotes Ndrg1
T6592 34-36 IN denotes on
T6593 37-40 NN denotes MTF
T6594 40-41 HYPH denotes -
T6595 41-42 CD denotes 1
T6596 42-219 sentence denotes Ndrg1 was significantly downregulated in microarrays of liver transcripts from cadmium-treated Mtf1Mx-cre mice compared to similarly treated Mtf1loxP control mice (Table 1, c).
T6597 43-48 NN denotes Ndrg1
T6598 67-80 VBN denotes downregulated
T6599 49-52 VBD denotes was
T6600 53-66 RB denotes significantly
T6601 81-83 IN denotes in
T6602 84-95 NNS denotes microarrays
T6603 96-98 IN denotes of
T6604 99-104 NN denotes liver
T6605 105-116 NNS denotes transcripts
T6606 117-121 IN denotes from
T6607 122-129 NN denotes cadmium
T6608 130-137 VBN denotes treated
T6609 129-130 HYPH denotes -
T6610 149-153 NNS denotes mice
T6611 138-144 NN denotes Mtf1Mx
T6612 145-148 NN denotes cre
T6613 144-145 HYPH denotes -
T6614 154-162 VBN denotes compared
T6615 163-165 IN denotes to
T6616 166-175 RB denotes similarly
T6617 176-183 VBN denotes treated
T6618 201-205 NNS denotes mice
T6619 184-192 NN denotes Mtf1loxP
T6620 193-200 NN denotes control
T6621 206-207 -LRB- denotes (
T6622 216-217 NN denotes c
T6623 207-212 NN denotes Table
T6624 213-214 CD denotes 1
T6625 214-216 , denotes ,
T6626 217-218 -RRB- denotes )
T6627 218-219 . denotes .
T6628 219-401 sentence denotes Ndrg1 probably has some role in stress response since various stimuli, including hypoxia and nickel compounds, activate expression of rodent Ndrg1 and/or its human ortholog (37–40).
T6629 220-225 NN denotes Ndrg1
T6630 235-238 VBZ denotes has
T6631 226-234 RB denotes probably
T6632 239-243 DT denotes some
T6633 244-248 NN denotes role
T6634 249-251 IN denotes in
T6635 252-258 NN denotes stress
T6636 259-267 NN denotes response
T6637 268-273 IN denotes since
T6638 331-339 VBP denotes activate
T6639 274-281 JJ denotes various
T6640 282-289 NNS denotes stimuli
T6641 289-291 , denotes ,
T6642 291-300 VBG denotes including
T6643 301-308 NN denotes hypoxia
T6644 320-329 NNS denotes compounds
T6645 309-312 CC denotes and
T6646 313-319 NN denotes nickel
T6647 329-331 , denotes ,
T6648 340-350 NN denotes expression
T6649 351-353 IN denotes of
T6650 354-360 NN denotes rodent
T6651 361-366 NN denotes Ndrg1
T6652 367-370 CC denotes and
T6653 370-371 HYPH denotes /
T6654 371-373 CC denotes or
T6655 374-377 PRP$ denotes its
T6656 384-392 NN denotes ortholog
T6657 378-383 JJ denotes human
T6658 393-394 -LRB- denotes (
T6659 394-396 CD denotes 37
T6660 396-397 SYM denotes –
T6661 397-399 CD denotes 40
T6662 399-400 -RRB- denotes )
T6663 400-401 . denotes .
T6664 401-713 sentence denotes The Ndrg1 microarray results were confirmed with semiquantitative RT–PCRs (Figure 3a): for Mtf1loxP control livers, a clear increase of Ndrg1 expression was observed after cadmium exposure; in livers from Mtf1Mx-cre mice, this cadmium response was not detectable, while basal expression was similar to controls.
T6665 402-405 DT denotes The
T6666 423-430 NNS denotes results
T6667 406-411 NN denotes Ndrg1
T6668 412-422 NN denotes microarray
T6669 436-445 VBN denotes confirmed
T6670 431-435 VBD denotes were
T6671 646-649 VBD denotes was
T6672 446-450 IN denotes with
T6673 451-467 JJ denotes semiquantitative
T6674 471-475 NNS denotes PCRs
T6675 468-470 NN denotes RT
T6676 470-471 HYPH denotes –
T6677 476-477 -LRB- denotes (
T6678 484-486 NN denotes 3a
T6679 477-483 NN denotes Figure
T6680 486-487 -RRB- denotes )
T6681 487-489 : denotes :
T6682 489-492 IN denotes for
T6683 559-567 VBN denotes observed
T6684 493-501 NN denotes Mtf1loxP
T6685 510-516 NNS denotes livers
T6686 502-509 NN denotes control
T6687 516-518 , denotes ,
T6688 518-519 DT denotes a
T6689 526-534 NN denotes increase
T6690 520-525 JJ denotes clear
T6691 535-537 IN denotes of
T6692 538-543 NN denotes Ndrg1
T6693 544-554 NN denotes expression
T6694 555-558 VBD denotes was
T6695 568-573 IN denotes after
T6696 574-581 NN denotes cadmium
T6697 582-590 NN denotes exposure
T6698 590-591 : denotes ;
T6699 592-594 IN denotes in
T6700 595-601 NNS denotes livers
T6701 602-606 IN denotes from
T6702 607-613 NN denotes Mtf1Mx
T6703 614-617 NN denotes cre
T6704 613-614 HYPH denotes -
T6705 618-622 NNS denotes mice
T6706 622-624 , denotes ,
T6707 624-628 DT denotes this
T6708 637-645 NN denotes response
T6709 629-636 NN denotes cadmium
T6710 650-653 RB denotes not
T6711 654-664 JJ denotes detectable
T6712 664-666 , denotes ,
T6713 666-671 IN denotes while
T6714 689-692 VBD denotes was
T6715 672-677 JJ denotes basal
T6716 678-688 NN denotes expression
T6717 693-700 JJ denotes similar
T6718 701-703 IN denotes to
T6719 704-712 NNS denotes controls
T6720 712-713 . denotes .
T6721 713-787 sentence denotes This indicates that cadmium-induced expression of Ndrg1 depends on MTF-1.
T6722 714-718 DT denotes This
T6723 719-728 VBZ denotes indicates
T6724 729-733 IN denotes that
T6725 770-777 VBZ denotes depends
T6726 734-741 NN denotes cadmium
T6727 742-749 VBN denotes induced
T6728 741-742 HYPH denotes -
T6729 750-760 NN denotes expression
T6730 761-763 IN denotes of
T6731 764-769 NN denotes Ndrg1
T6732 778-780 IN denotes on
T6733 781-784 NN denotes MTF
T6734 784-785 HYPH denotes -
T6735 785-786 CD denotes 1
T6736 786-787 . denotes .
T6737 787-894 sentence denotes Five MRE core consensus sequences are located upstream of the mouse Ndrg1 transcription start (Figure 3b).
T6738 788-792 CD denotes Five
T6739 812-821 NNS denotes sequences
T6740 793-796 NN denotes MRE
T6741 797-801 NN denotes core
T6742 802-811 NN denotes consensus
T6743 826-833 VBN denotes located
T6744 822-825 VBP denotes are
T6745 834-842 RB denotes upstream
T6746 843-845 IN denotes of
T6747 846-849 DT denotes the
T6748 876-881 NN denotes start
T6749 850-855 NN denotes mouse
T6750 856-861 NN denotes Ndrg1
T6751 862-875 NN denotes transcription
T6752 882-883 -LRB- denotes (
T6753 890-892 NN denotes 3b
T6754 883-889 NN denotes Figure
T6755 892-893 -RRB- denotes )
T6756 893-894 . denotes .
T6757 894-1013 sentence denotes Four of them are clustered (MRE1 to MRE4, −138 to −332 bp), the fifth one is located farther upstream (MRE5, −883 bp).
T6758 895-899 CD denotes Four
T6759 912-921 VBN denotes clustered
T6760 900-902 IN denotes of
T6761 903-907 PRP denotes them
T6762 908-911 VBP denotes are
T6763 972-979 VBN denotes located
T6764 922-923 -LRB- denotes (
T6765 950-952 NN denotes bp
T6766 923-927 NN denotes MRE1
T6767 928-930 IN denotes to
T6768 931-935 NN denotes MRE4
T6769 935-937 , denotes ,
T6770 937-938 SYM denotes −
T6771 946-949 CD denotes 332
T6772 938-941 CD denotes 138
T6773 942-944 IN denotes to
T6774 945-946 SYM denotes −
T6775 952-953 -RRB- denotes )
T6776 953-955 , denotes ,
T6777 955-958 DT denotes the
T6778 965-968 CD denotes one
T6779 959-964 JJ denotes fifth
T6780 969-971 VBZ denotes is
T6781 980-987 RB denotes farther
T6782 988-996 RB denotes upstream
T6783 997-998 -LRB- denotes (
T6784 1009-1011 NN denotes bp
T6785 998-1002 NN denotes MRE5
T6786 1002-1004 , denotes ,
T6787 1004-1005 SYM denotes −
T6788 1005-1008 CD denotes 883
T6789 1011-1012 -RRB- denotes )
T6790 1012-1013 . denotes .
T6791 1013-1134 sentence denotes EMSA was performed to test whether MTF-1 is interacting with some or all of the four proximal MRE sequences (Figure 3c).
T6792 1014-1018 NN denotes EMSA
T6793 1023-1032 VBN denotes performed
T6794 1019-1022 VBD denotes was
T6795 1033-1035 TO denotes to
T6796 1036-1040 VB denotes test
T6797 1041-1048 IN denotes whether
T6798 1058-1069 VBG denotes interacting
T6799 1049-1052 NN denotes MTF
T6800 1052-1053 HYPH denotes -
T6801 1053-1054 CD denotes 1
T6802 1055-1057 VBZ denotes is
T6803 1070-1074 IN denotes with
T6804 1075-1079 DT denotes some
T6805 1080-1082 CC denotes or
T6806 1083-1086 DT denotes all
T6807 1087-1089 IN denotes of
T6808 1090-1093 DT denotes the
T6809 1112-1121 NNS denotes sequences
T6810 1094-1098 CD denotes four
T6811 1099-1107 JJ denotes proximal
T6812 1108-1111 NN denotes MRE
T6813 1122-1123 -LRB- denotes (
T6814 1130-1132 NN denotes 3c
T6815 1123-1129 NN denotes Figure
T6816 1132-1133 -RRB- denotes )
T6817 1133-1134 . denotes .
T6818 1134-1280 sentence denotes Separate oligonucleotides were tested for MRE1 and MRE2, whereas one oligonucleotide spanning both sequences was used for MRE3 and MRE4 (MRE3,4).
T6819 1135-1143 JJ denotes Separate
T6820 1144-1160 NNS denotes oligonucleotides
T6821 1166-1172 VBN denotes tested
T6822 1161-1165 VBD denotes were
T6823 1173-1176 IN denotes for
T6824 1177-1181 NN denotes MRE1
T6825 1182-1185 CC denotes and
T6826 1186-1190 NN denotes MRE2
T6827 1190-1192 , denotes ,
T6828 1192-1199 IN denotes whereas
T6829 1248-1252 VBN denotes used
T6830 1200-1203 CD denotes one
T6831 1204-1219 NN denotes oligonucleotide
T6832 1220-1228 VBG denotes spanning
T6833 1229-1233 DT denotes both
T6834 1234-1243 NNS denotes sequences
T6835 1244-1247 VBD denotes was
T6836 1253-1256 IN denotes for
T6837 1257-1261 NN denotes MRE3
T6838 1262-1265 CC denotes and
T6839 1266-1270 NN denotes MRE4
T6840 1271-1272 -LRB- denotes (
T6841 1277-1278 CD denotes 4
T6842 1272-1276 NN denotes MRE3
T6843 1276-1277 , denotes ,
T6844 1278-1279 -RRB- denotes )
T6845 1279-1280 . denotes .
T6846 1280-1451 sentence denotes No complex was seen with MRE1, but specific MTF-1 complexes were observed for both the MRE2 and MRE3,4 oligonucleotides with liver protein extract from an Mtf1loxP mouse.
T6847 1281-1283 DT denotes No
T6848 1284-1291 NN denotes complex
T6849 1296-1300 VBN denotes seen
T6850 1292-1295 VBD denotes was
T6851 1301-1305 IN denotes with
T6852 1306-1310 NN denotes MRE1
T6853 1310-1312 , denotes ,
T6854 1312-1315 CC denotes but
T6855 1316-1324 JJ denotes specific
T6856 1331-1340 NNS denotes complexes
T6857 1325-1328 NN denotes MTF
T6858 1328-1329 HYPH denotes -
T6859 1329-1330 CD denotes 1
T6860 1346-1354 VBN denotes observed
T6861 1341-1345 VBD denotes were
T6862 1355-1358 IN denotes for
T6863 1359-1363 CC denotes both
T6864 1368-1372 NN denotes MRE2
T6865 1364-1367 DT denotes the
T6866 1373-1376 CC denotes and
T6867 1377-1381 NN denotes MRE3
T6868 1381-1382 , denotes ,
T6869 1382-1383 CD denotes 4
T6870 1384-1400 NNS denotes oligonucleotides
T6871 1401-1405 IN denotes with
T6872 1406-1411 NN denotes liver
T6873 1420-1427 NN denotes extract
T6874 1412-1419 NN denotes protein
T6875 1428-1432 IN denotes from
T6876 1433-1435 DT denotes an
T6877 1445-1450 NN denotes mouse
T6878 1436-1444 NN denotes Mtf1loxP
T6879 1450-1451 . denotes .
T6880 1451-1552 sentence denotes As expected, no bandshift was observed with protein extract from a mouse lacking MTF-1 (Mtf1Mx-cre).
T6881 1452-1454 IN denotes As
T6882 1455-1463 VBN denotes expected
T6883 1482-1490 VBN denotes observed
T6884 1463-1465 , denotes ,
T6885 1465-1467 DT denotes no
T6886 1468-1477 NN denotes bandshift
T6887 1478-1481 VBD denotes was
T6888 1491-1495 IN denotes with
T6889 1496-1503 NN denotes protein
T6890 1504-1511 NN denotes extract
T6891 1512-1516 IN denotes from
T6892 1517-1518 DT denotes a
T6893 1519-1524 NN denotes mouse
T6894 1525-1532 VBG denotes lacking
T6895 1533-1536 NN denotes MTF
T6896 1536-1537 HYPH denotes -
T6897 1537-1538 CD denotes 1
T6898 1539-1540 -LRB- denotes (
T6899 1540-1546 NN denotes Mtf1Mx
T6900 1547-1550 NN denotes cre
T6901 1546-1547 HYPH denotes -
T6902 1550-1551 -RRB- denotes )
T6903 1551-1552 . denotes .
R4203 T6587 T6588 compound Cadmium,response
R4204 T6588 T6589 nsubj response,depends
R4205 T6590 T6588 prep of,response
R4206 T6591 T6590 pobj Ndrg1,of
R4207 T6592 T6589 prep on,depends
R4208 T6593 T6592 pobj MTF,on
R4209 T6594 T6593 punct -,MTF
R4210 T6595 T6593 nummod 1,MTF
R4211 T6597 T6598 nsubjpass Ndrg1,downregulated
R4212 T6599 T6598 auxpass was,downregulated
R4213 T6600 T6598 advmod significantly,downregulated
R4214 T6601 T6598 prep in,downregulated
R4215 T6602 T6601 pobj microarrays,in
R4216 T6603 T6602 prep of,microarrays
R4217 T6604 T6605 compound liver,transcripts
R4218 T6605 T6603 pobj transcripts,of
R4219 T6606 T6605 prep from,transcripts
R4220 T6607 T6608 npadvmod cadmium,treated
R4221 T6608 T6610 amod treated,mice
R4222 T6609 T6608 punct -,treated
R4223 T6610 T6606 pobj mice,from
R4224 T6611 T6612 compound Mtf1Mx,cre
R4225 T6612 T6610 compound cre,mice
R4226 T6613 T6612 punct -,cre
R4227 T6614 T6598 prep compared,downregulated
R4228 T6615 T6614 prep to,compared
R4229 T6616 T6617 advmod similarly,treated
R4230 T6617 T6618 amod treated,mice
R4231 T6618 T6615 pobj mice,to
R4232 T6619 T6618 compound Mtf1loxP,mice
R4233 T6620 T6618 compound control,mice
R4234 T6621 T6622 punct (,c
R4235 T6622 T6598 parataxis c,downregulated
R4236 T6623 T6622 nmod Table,c
R4237 T6624 T6622 nummod 1,c
R4238 T6625 T6622 punct ", ",c
R4239 T6626 T6622 punct ),c
R4240 T6627 T6598 punct .,downregulated
R4241 T6629 T6630 nsubj Ndrg1,has
R4242 T6631 T6630 advmod probably,has
R4243 T6632 T6633 det some,role
R4244 T6633 T6630 dobj role,has
R4245 T6634 T6633 prep in,role
R4246 T6635 T6636 compound stress,response
R4247 T6636 T6634 pobj response,in
R4248 T6637 T6638 mark since,activate
R4249 T6638 T6630 advcl activate,has
R4250 T6639 T6640 amod various,stimuli
R4251 T6640 T6638 nsubj stimuli,activate
R4252 T6641 T6640 punct ", ",stimuli
R4253 T6642 T6640 prep including,stimuli
R4254 T6643 T6644 nmod hypoxia,compounds
R4255 T6644 T6642 pobj compounds,including
R4256 T6645 T6643 cc and,hypoxia
R4257 T6646 T6643 conj nickel,hypoxia
R4258 T6647 T6638 punct ", ",activate
R4259 T6648 T6638 dobj expression,activate
R4260 T6649 T6648 prep of,expression
R4261 T6650 T6651 compound rodent,Ndrg1
R4262 T6651 T6649 pobj Ndrg1,of
R4263 T6652 T6648 cc and,expression
R4264 T6653 T6652 punct /,and
R4265 T6654 T6652 cc or,and
R4266 T6655 T6656 poss its,ortholog
R4267 T6656 T6648 conj ortholog,expression
R4268 T6657 T6656 amod human,ortholog
R4269 T6658 T6659 punct (,37
R4270 T6659 T6638 parataxis 37,activate
R4271 T6660 T6661 punct –,40
R4272 T6661 T6659 prep 40,37
R4273 T6662 T6659 punct ),37
R4274 T6663 T6630 punct .,has
R4275 T6665 T6666 det The,results
R4276 T6666 T6669 nsubjpass results,confirmed
R4277 T6667 T6666 compound Ndrg1,results
R4278 T6668 T6666 compound microarray,results
R4279 T6669 T6671 ccomp confirmed,was
R4280 T6670 T6669 auxpass were,confirmed
R4281 T6672 T6669 prep with,confirmed
R4282 T6673 T6674 amod semiquantitative,PCRs
R4283 T6674 T6672 pobj PCRs,with
R4284 T6675 T6674 compound RT,PCRs
R4285 T6676 T6674 punct –,PCRs
R4286 T6677 T6678 punct (,3a
R4287 T6678 T6669 parataxis 3a,confirmed
R4288 T6679 T6678 compound Figure,3a
R4289 T6680 T6678 punct ),3a
R4290 T6681 T6671 punct : ,was
R4291 T6682 T6683 prep for,observed
R4292 T6683 T6671 ccomp observed,was
R4293 T6684 T6685 compound Mtf1loxP,livers
R4294 T6685 T6682 pobj livers,for
R4295 T6686 T6685 compound control,livers
R4296 T6687 T6683 punct ", ",observed
R4297 T6688 T6689 det a,increase
R4298 T6689 T6683 nsubjpass increase,observed
R4299 T6690 T6689 amod clear,increase
R4300 T6691 T6689 prep of,increase
R4301 T6692 T6693 compound Ndrg1,expression
R4302 T6693 T6691 pobj expression,of
R4303 T6694 T6683 auxpass was,observed
R4304 T6695 T6683 prep after,observed
R4305 T6696 T6697 compound cadmium,exposure
R4306 T6697 T6695 pobj exposure,after
R4307 T6698 T6671 punct ;,was
R4308 T6699 T6671 prep in,was
R4309 T6700 T6699 pobj livers,in
R4310 T6701 T6700 prep from,livers
R4311 T6702 T6703 compound Mtf1Mx,cre
R4312 T6703 T6705 compound cre,mice
R4313 T6704 T6703 punct -,cre
R4314 T6705 T6701 pobj mice,from
R4315 T6706 T6671 punct ", ",was
R4316 T6707 T6708 det this,response
R4317 T6708 T6671 nsubj response,was
R4318 T6709 T6708 compound cadmium,response
R4319 T6710 T6671 neg not,was
R4320 T6711 T6671 acomp detectable,was
R4321 T6712 T6671 punct ", ",was
R4322 T6713 T6714 mark while,was
R4323 T6714 T6671 advcl was,was
R4324 T6715 T6716 amod basal,expression
R4325 T6716 T6714 nsubj expression,was
R4326 T6717 T6714 acomp similar,was
R4327 T6718 T6717 prep to,similar
R4328 T6719 T6718 pobj controls,to
R4329 T6720 T6671 punct .,was
R4330 T6722 T6723 nsubj This,indicates
R4331 T6724 T6725 mark that,depends
R4332 T6725 T6723 ccomp depends,indicates
R4333 T6726 T6727 npadvmod cadmium,induced
R4334 T6727 T6729 amod induced,expression
R4335 T6728 T6727 punct -,induced
R4336 T6729 T6725 nsubj expression,depends
R4337 T6730 T6729 prep of,expression
R4338 T6731 T6730 pobj Ndrg1,of
R4339 T6732 T6725 prep on,depends
R4340 T6733 T6732 pobj MTF,on
R4341 T6734 T6733 punct -,MTF
R4342 T6735 T6733 nummod 1,MTF
R4343 T6736 T6723 punct .,indicates
R4344 T6738 T6739 nummod Five,sequences
R4345 T6739 T6743 nsubjpass sequences,located
R4346 T6740 T6739 compound MRE,sequences
R4347 T6741 T6739 compound core,sequences
R4348 T6742 T6739 compound consensus,sequences
R4349 T6744 T6743 auxpass are,located
R4350 T6745 T6743 advmod upstream,located
R4351 T6746 T6745 prep of,upstream
R4352 T6747 T6748 det the,start
R4353 T6748 T6746 pobj start,of
R4354 T6749 T6748 compound mouse,start
R4355 T6750 T6748 compound Ndrg1,start
R4356 T6751 T6748 compound transcription,start
R4357 T6752 T6753 punct (,3b
R4358 T6753 T6743 parataxis 3b,located
R4359 T6754 T6753 compound Figure,3b
R4360 T6755 T6753 punct ),3b
R4361 T6756 T6743 punct .,located
R4362 T6758 T6759 nsubjpass Four,clustered
R4363 T6759 T6763 ccomp clustered,located
R4364 T6760 T6758 prep of,Four
R4365 T6761 T6760 pobj them,of
R4366 T6762 T6759 auxpass are,clustered
R4367 T6764 T6765 punct (,bp
R4368 T6765 T6759 parataxis bp,clustered
R4369 T6766 T6765 dep MRE1,bp
R4370 T6767 T6766 prep to,MRE1
R4371 T6768 T6767 pobj MRE4,to
R4372 T6769 T6765 punct ", ",bp
R4373 T6770 T6771 punct −,332
R4374 T6771 T6765 nummod 332,bp
R4375 T6772 T6771 quantmod 138,332
R4376 T6773 T6771 quantmod to,332
R4377 T6774 T6771 punct −,332
R4378 T6775 T6765 punct ),bp
R4379 T6776 T6763 punct ", ",located
R4380 T6777 T6778 det the,one
R4381 T6778 T6763 nsubjpass one,located
R4382 T6779 T6778 amod fifth,one
R4383 T6780 T6763 auxpass is,located
R4384 T6781 T6782 advmod farther,upstream
R4385 T6782 T6763 advmod upstream,located
R4386 T6783 T6784 punct (,bp
R4387 T6784 T6763 parataxis bp,located
R4388 T6785 T6784 dep MRE5,bp
R4389 T6786 T6784 punct ", ",bp
R4390 T6787 T6788 punct −,883
R4391 T6788 T6784 nummod 883,bp
R4392 T6789 T6784 punct ),bp
R4393 T6790 T6763 punct .,located
R4394 T6792 T6793 nsubjpass EMSA,performed
R4395 T6794 T6793 auxpass was,performed
R4396 T6795 T6796 aux to,test
R4397 T6796 T6793 advcl test,performed
R4398 T6797 T6798 mark whether,interacting
R4399 T6798 T6796 ccomp interacting,test
R4400 T6799 T6798 nsubj MTF,interacting
R4401 T6800 T6799 punct -,MTF
R4402 T6801 T6799 nummod 1,MTF
R4403 T6802 T6798 aux is,interacting
R4404 T6803 T6798 prep with,interacting
R4405 T6804 T6803 pobj some,with
R4406 T6805 T6804 cc or,some
R4407 T6806 T6804 conj all,some
R4408 T6807 T6806 prep of,all
R4409 T6808 T6809 det the,sequences
R4410 T6809 T6807 pobj sequences,of
R4411 T6810 T6809 nummod four,sequences
R4412 T6811 T6809 amod proximal,sequences
R4413 T6812 T6809 compound MRE,sequences
R4414 T6813 T6814 punct (,3c
R4415 T6814 T6798 parataxis 3c,interacting
R4416 T6815 T6814 compound Figure,3c
R4417 T6816 T6814 punct ),3c
R4418 T6817 T6793 punct .,performed
R4419 T6819 T6820 amod Separate,oligonucleotides
R4420 T6820 T6821 nsubjpass oligonucleotides,tested
R4421 T6822 T6821 auxpass were,tested
R4422 T6823 T6821 prep for,tested
R4423 T6824 T6823 pobj MRE1,for
R4424 T6825 T6824 cc and,MRE1
R4425 T6826 T6824 conj MRE2,MRE1
R4426 T6827 T6821 punct ", ",tested
R4427 T6828 T6829 mark whereas,used
R4428 T6829 T6821 advcl used,tested
R4429 T6830 T6831 nummod one,oligonucleotide
R4430 T6831 T6829 nsubjpass oligonucleotide,used
R4431 T6832 T6831 acl spanning,oligonucleotide
R4432 T6833 T6834 det both,sequences
R4433 T6834 T6832 dobj sequences,spanning
R4434 T6835 T6829 auxpass was,used
R4435 T6836 T6829 prep for,used
R4436 T6837 T6836 pobj MRE3,for
R4437 T6838 T6837 cc and,MRE3
R4438 T6839 T6837 conj MRE4,MRE3
R4439 T6840 T6841 punct (,4
R4440 T6841 T6829 parataxis 4,used
R4441 T6842 T6841 dep MRE3,4
R4442 T6843 T6841 punct ",",4
R4443 T6844 T6841 punct ),4
R4444 T6845 T6821 punct .,tested
R4445 T6847 T6848 det No,complex
R4446 T6848 T6849 nsubjpass complex,seen
R4447 T6850 T6849 auxpass was,seen
R4448 T6851 T6849 prep with,seen
R4449 T6852 T6851 pobj MRE1,with
R4450 T6853 T6849 punct ", ",seen
R4451 T6854 T6849 cc but,seen
R4452 T6855 T6856 amod specific,complexes
R4453 T6856 T6860 nsubjpass complexes,observed
R4454 T6857 T6856 nmod MTF,complexes
R4455 T6858 T6857 punct -,MTF
R4456 T6859 T6857 nummod 1,MTF
R4457 T6860 T6849 conj observed,seen
R4458 T6861 T6860 auxpass were,observed
R4459 T6862 T6860 prep for,observed
R4460 T6863 T6864 preconj both,MRE2
R4461 T6864 T6862 pobj MRE2,for
R4462 T6865 T6864 det the,MRE2
R4463 T6866 T6864 cc and,MRE2
R4464 T6867 T6864 conj MRE3,MRE2
R4465 T6868 T6864 punct ",",MRE2
R4466 T6869 T6870 nummod 4,oligonucleotides
R4467 T6870 T6864 appos oligonucleotides,MRE2
R4468 T6871 T6870 prep with,oligonucleotides
R4469 T6872 T6873 compound liver,extract
R4470 T6873 T6871 pobj extract,with
R4471 T6874 T6873 compound protein,extract
R4472 T6875 T6873 prep from,extract
R4473 T6876 T6877 det an,mouse
R4474 T6877 T6875 pobj mouse,from
R4475 T6878 T6877 compound Mtf1loxP,mouse
R4476 T6879 T6860 punct .,observed
R4477 T6881 T6882 mark As,expected
R4478 T6882 T6883 advcl expected,observed
R4479 T6884 T6883 punct ", ",observed
R4480 T6885 T6886 det no,bandshift
R4481 T6886 T6883 nsubjpass bandshift,observed
R4482 T6887 T6883 auxpass was,observed
R4483 T6888 T6883 prep with,observed
R4484 T6889 T6890 compound protein,extract
R4485 T6890 T6888 pobj extract,with
R4486 T6891 T6890 prep from,extract
R4487 T6892 T6893 det a,mouse
R4488 T6893 T6891 pobj mouse,from
R4489 T6894 T6893 acl lacking,mouse
R4490 T6895 T6894 dobj MTF,lacking
R4491 T6896 T6895 punct -,MTF
R4492 T6897 T6895 nummod 1,MTF
R4493 T6898 T6893 punct (,mouse
R4494 T6899 T6900 compound Mtf1Mx,cre
R4495 T6900 T6893 appos cre,mouse
R4496 T6901 T6900 punct -,cre
R4497 T6902 T6883 punct ),observed
R4498 T6903 T6883 punct .,observed

2_test

Id Subject Object Predicate Lexical cue
16221973-9605764-77403433 394-396 9605764 denotes 37
16221973-10910041-77403433 394-396 10910041 denotes 37
16221973-11059752-77403433 394-396 11059752 denotes 37
16221973-15341671-77403433 394-396 15341671 denotes 37

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6467 20-25 PR:000011059 denotes Ndrg1
T6468 37-42 PR:000010717 denotes MTF-1
T6469 43-48 PR:000011059 denotes Ndrg1
T6470 99-104 UBERON:0002107 denotes liver
T6471 105-116 SO:0000673 denotes transcripts
T6472 138-142 PR:000010717 denotes Mtf1
T6473 142-144 PR:000010788 denotes Mx
T6474 149-153 NCBITaxon:10088 denotes mice
T6475 184-188 PR:000010717 denotes Mtf1
T6476 188-192 SO:0000346 denotes loxP
T6477 201-205 NCBITaxon:10088 denotes mice
T6478 220-225 PR:000011059 denotes Ndrg1
T6479 320-329 CHEBI:36357 denotes compounds
T6480 340-350 GO:0010467 denotes expression
T6481 354-360 NCBITaxon:9989 denotes rodent
T6482 361-366 PR:000011059 denotes Ndrg1
T6483 378-383 NCBITaxon:9606 denotes human
T6484 384-392 SO:0000855 denotes ortholog
T6485 406-411 PR:000011059 denotes Ndrg1
T6486 493-497 PR:000010717 denotes Mtf1
T6487 497-501 SO:0000346 denotes loxP
T6488 510-516 UBERON:0002107 denotes livers
T6489 538-543 PR:000011059 denotes Ndrg1
T6490 544-554 GO:0010467 denotes expression
T6491 595-601 UBERON:0002107 denotes livers
T6492 607-611 PR:000010717 denotes Mtf1
T6493 611-613 PR:000010788 denotes Mx
T6494 618-622 NCBITaxon:10088 denotes mice
T6495 678-688 GO:0010467 denotes expression
T6496 750-760 GO:0010467 denotes expression
T6497 764-769 PR:000011059 denotes Ndrg1
T6498 781-786 PR:000010717 denotes MTF-1
T6499 802-811 SO:0000993 denotes consensus
T6500 850-855 NCBITaxon:10088 denotes mouse
T6501 856-861 PR:000011059 denotes Ndrg1
T6502 950-952 SO:0000028 denotes bp
T6503 1009-1011 SO:0000028 denotes bp
T6504 1049-1054 PR:000010717 denotes MTF-1
T6505 1284-1291 GO:0032991 denotes complex
T6506 1325-1330 PR:000010717 denotes MTF-1
T6507 1331-1340 GO:0032991 denotes complexes
T6508 1406-1411 UBERON:0002107 denotes liver
T6509 1436-1440 PR:000010717 denotes Mtf1
T6510 1440-1444 SO:0000346 denotes loxP
T6511 1445-1450 NCBITaxon:10088 denotes mouse
T6512 1519-1524 NCBITaxon:10088 denotes mouse
T6513 1533-1538 PR:000010717 denotes MTF-1
T6514 1540-1544 PR:000010717 denotes Mtf1
T6515 1544-1546 PR:000010788 denotes Mx

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6516 0-7 CHEBI_EXT:cadmium denotes Cadmium
T6517 8-16 GO_EXT:reaction_or_response denotes response
T6518 20-25 PR_EXT:000011059 denotes Ndrg1
T6519 37-42 PR_EXT:000010717 denotes MTF-1
T6520 43-48 PR_EXT:000011059 denotes Ndrg1
T6521 67-80 GO_EXT:negative_regulation denotes downregulated
T6522 99-104 UBERON:0002107 denotes liver
T6523 105-116 SO_EXT:0000673 denotes transcripts
T6524 122-129 CHEBI_EXT:cadmium denotes cadmium
T6525 138-142 PR_EXT:000010717 denotes Mtf1
T6526 142-144 PR_EXT:000010788 denotes Mx
T6527 149-153 NCBITaxon:10088 denotes mice
T6528 184-188 PR_EXT:000010717 denotes Mtf1
T6529 188-192 SO_EXT:0000346 denotes loxP
T6530 201-205 NCBITaxon:10088 denotes mice
T6531 220-225 PR_EXT:000011059 denotes Ndrg1
T6532 259-267 GO_EXT:reaction_or_response denotes response
T6533 313-319 CHEBI_EXT:nickel denotes nickel
T6534 320-329 CHEBI:36357 denotes compounds
T6535 340-350 GO:0010467 denotes expression
T6536 354-360 NCBITaxon:9989 denotes rodent
T6537 361-366 PR_EXT:000011059 denotes Ndrg1
T6538 378-383 NCBITaxon:9606 denotes human
T6539 384-392 SO_EXT:0000855 denotes ortholog
T6540 406-411 PR_EXT:000011059 denotes Ndrg1
T6541 468-470 GO_EXT:reverse_transcription_or_reverse_transcriptase denotes RT
T6542 493-497 PR_EXT:000010717 denotes Mtf1
T6543 497-501 SO_EXT:0000346 denotes loxP
T6544 510-516 UBERON:0002107 denotes livers
T6545 538-543 PR_EXT:000011059 denotes Ndrg1
T6546 544-554 GO:0010467 denotes expression
T6547 574-581 CHEBI_EXT:cadmium denotes cadmium
T6548 595-601 UBERON:0002107 denotes livers
T6549 607-611 PR_EXT:000010717 denotes Mtf1
T6550 611-613 PR_EXT:000010788 denotes Mx
T6551 618-622 NCBITaxon:10088 denotes mice
T6552 629-636 CHEBI_EXT:cadmium denotes cadmium
T6553 637-645 GO_EXT:reaction_or_response denotes response
T6554 678-688 GO:0010467 denotes expression
T6555 734-741 CHEBI_EXT:cadmium denotes cadmium
T6556 750-760 GO:0010467 denotes expression
T6557 764-769 PR_EXT:000011059 denotes Ndrg1
T6558 781-786 PR_EXT:000010717 denotes MTF-1
T6559 802-811 SO:0000993 denotes consensus
T6560 812-821 SO_EXT:biological_sequence denotes sequences
T6561 834-842 SO_EXT:sequence_upstreamness denotes upstream
T6562 850-855 NCBITaxon:10088 denotes mouse
T6563 856-861 PR_EXT:000011059 denotes Ndrg1
T6564 862-881 GO_SO_EXT:transcriptional_start_entity_or_process denotes transcription start
T6565 950-952 SO_EXT:0000028 denotes bp
T6566 988-996 SO_EXT:sequence_upstreamness denotes upstream
T6567 1009-1011 SO_EXT:0000028 denotes bp
T6568 1049-1054 PR_EXT:000010717 denotes MTF-1
T6569 1112-1121 SO_EXT:biological_sequence denotes sequences
T6570 1144-1160 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotides
T6571 1204-1219 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotide
T6572 1234-1243 SO_EXT:biological_sequence denotes sequences
T6573 1284-1291 GO:0032991 denotes complex
T6574 1325-1330 PR_EXT:000010717 denotes MTF-1
T6575 1331-1340 GO:0032991 denotes complexes
T6576 1384-1400 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotides
T6577 1406-1411 UBERON:0002107 denotes liver
T6578 1412-1419 CHEBI_PR_EXT:protein denotes protein
T6579 1436-1440 PR_EXT:000010717 denotes Mtf1
T6580 1440-1444 SO_EXT:0000346 denotes loxP
T6581 1445-1450 NCBITaxon:10088 denotes mouse
T6582 1496-1503 CHEBI_PR_EXT:protein denotes protein
T6583 1519-1524 NCBITaxon:10088 denotes mouse
T6584 1533-1538 PR_EXT:000010717 denotes MTF-1
T6585 1540-1544 PR_EXT:000010717 denotes Mtf1
T6586 1544-1546 PR_EXT:000010788 denotes Mx