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PMC:1253828 / 17852-19544 JSONTXT

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Id Subject Object Predicate Lexical cue
T5502 0-2 IN denotes In
T5503 92-100 VBN denotes compared
T5504 3-4 DT denotes a
T5505 12-20 NN denotes approach
T5506 5-11 JJ denotes second
T5507 20-22 , denotes ,
T5508 22-25 DT denotes the
T5509 42-49 NN denotes profile
T5510 26-30 NN denotes gene
T5511 31-41 NN denotes expression
T5512 50-52 IN denotes in
T5513 53-59 NNS denotes livers
T5514 60-62 IN denotes of
T5515 63-66 DT denotes the
T5516 83-87 NNS denotes mice
T5517 67-72 RB denotes above
T5518 73-82 VBN denotes mentioned
T5519 88-91 VBD denotes was
T5520 101-103 IN denotes by
T5521 104-114 NNP denotes Affymetrix
T5522 115-123 NNP denotes GeneChip
T5523 146-152 NNS denotes Arrays
T5524 123-124 SYM denotes ®
T5525 125-130 NNP denotes Mouse
T5526 131-137 NNP denotes Genome
T5527 138-141 CD denotes 430
T5528 142-145 CD denotes 2.0
T5529 153-154 -LRB- denotes (
T5530 154-159 NN denotes Table
T5531 160-161 CD denotes 1
T5532 161-162 -RRB- denotes )
T5533 162-163 . denotes .
T5534 163-442 sentence denotes When analyzing the probe array data of livers from mock-treated Mtf1Mx-cre and Mtf1loxP mice, an at least 2-fold, reliable downregulation of expression was detected in Mtf1Mx-cre livers for 13 Affymetrix GeneChip® probe sets corresponding to 11 characterized genes (Table 1, a).
T5535 164-168 WRB denotes When
T5536 169-178 VBG denotes analyzing
T5537 320-328 VBN denotes detected
T5538 179-182 DT denotes the
T5539 195-199 NNS denotes data
T5540 183-188 NN denotes probe
T5541 189-194 NN denotes array
T5542 200-202 IN denotes of
T5543 203-209 NNS denotes livers
T5544 210-214 IN denotes from
T5545 215-219 JJ denotes mock
T5546 220-227 VBN denotes treated
T5547 219-220 HYPH denotes -
T5548 252-256 NNS denotes mice
T5549 228-234 NN denotes Mtf1Mx
T5550 235-238 NN denotes cre
T5551 234-235 HYPH denotes -
T5552 239-242 CC denotes and
T5553 243-251 NN denotes Mtf1loxP
T5554 256-258 , denotes ,
T5555 258-260 DT denotes an
T5556 287-301 NN denotes downregulation
T5557 261-263 RB denotes at
T5558 264-269 RBS denotes least
T5559 270-276 JJ denotes 2-fold
T5560 276-278 , denotes ,
T5561 278-286 JJ denotes reliable
T5562 302-304 IN denotes of
T5563 305-315 NN denotes expression
T5564 316-319 VBD denotes was
T5565 329-331 IN denotes in
T5566 332-338 NN denotes Mtf1Mx
T5567 339-342 NN denotes cre
T5568 338-339 HYPH denotes -
T5569 343-349 NNS denotes livers
T5570 350-353 IN denotes for
T5571 354-356 CD denotes 13
T5572 384-388 NNS denotes sets
T5573 357-367 NNP denotes Affymetrix
T5574 368-376 NNP denotes GeneChip
T5575 376-377 SYM denotes ®
T5576 378-383 NN denotes probe
T5577 389-402 VBG denotes corresponding
T5578 403-405 IN denotes to
T5579 406-408 CD denotes 11
T5580 423-428 NNS denotes genes
T5581 409-422 VBN denotes characterized
T5582 429-430 -LRB- denotes (
T5583 439-440 NN denotes a
T5584 430-435 NN denotes Table
T5585 436-437 CD denotes 1
T5586 437-439 , denotes ,
T5587 440-441 -RRB- denotes )
T5588 441-442 . denotes .
T5589 442-584 sentence denotes Seven of these genes contain one or more MRE core consensus sequence TGCRCNC within a segment of 1000 bp upstream of the transcription start.
T5590 443-448 CD denotes Seven
T5591 464-471 VBP denotes contain
T5592 449-451 IN denotes of
T5593 452-457 DT denotes these
T5594 458-463 NNS denotes genes
T5595 472-475 CD denotes one
T5596 512-519 NN denotes TGCRCNC
T5597 476-478 CC denotes or
T5598 479-483 JJR denotes more
T5599 484-487 NN denotes MRE
T5600 488-492 NN denotes core
T5601 493-502 NN denotes consensus
T5602 503-511 NN denotes sequence
T5603 520-526 IN denotes within
T5604 527-528 DT denotes a
T5605 529-536 NN denotes segment
T5606 537-539 IN denotes of
T5607 540-544 CD denotes 1000
T5608 545-547 NN denotes bp
T5609 548-556 RB denotes upstream
T5610 557-559 IN denotes of
T5611 560-563 DT denotes the
T5612 578-583 NN denotes start
T5613 564-577 NN denotes transcription
T5614 583-584 . denotes .
T5615 584-825 sentence denotes For 26 probe sets corresponding to 24 different characterized genes, a 2-fold or higher, reliable upregulation was detected in Mtf1Mx-cre livers (Table 1, b); 17 of these 24 genes contain MRE core consensus sequences in the upstream region.
T5616 585-588 IN denotes For
T5617 700-708 VBN denotes detected
T5618 589-591 CD denotes 26
T5619 598-602 NNS denotes sets
T5620 592-597 NN denotes probe
T5621 603-616 VBG denotes corresponding
T5622 617-619 IN denotes to
T5623 620-622 CD denotes 24
T5624 647-652 NNS denotes genes
T5625 623-632 JJ denotes different
T5626 633-646 VBN denotes characterized
T5627 652-654 , denotes ,
T5628 654-655 DT denotes a
T5629 683-695 NN denotes upregulation
T5630 656-662 JJ denotes 2-fold
T5631 663-665 CC denotes or
T5632 666-672 JJR denotes higher
T5633 672-674 , denotes ,
T5634 674-682 JJ denotes reliable
T5635 696-699 VBD denotes was
T5636 765-772 VBP denotes contain
T5637 709-711 IN denotes in
T5638 712-718 NN denotes Mtf1Mx
T5639 719-722 NN denotes cre
T5640 718-719 HYPH denotes -
T5641 723-729 NNS denotes livers
T5642 730-731 -LRB- denotes (
T5643 740-741 NN denotes b
T5644 731-736 NN denotes Table
T5645 737-738 CD denotes 1
T5646 738-740 , denotes ,
T5647 741-742 -RRB- denotes )
T5648 742-743 : denotes ;
T5649 744-746 CD denotes 17
T5650 747-749 IN denotes of
T5651 750-755 DT denotes these
T5652 759-764 NNS denotes genes
T5653 756-758 CD denotes 24
T5654 773-776 NN denotes MRE
T5655 777-781 NN denotes core
T5656 792-801 NNS denotes sequences
T5657 782-791 NN denotes consensus
T5658 802-804 IN denotes in
T5659 805-808 DT denotes the
T5660 818-824 NN denotes region
T5661 809-817 JJ denotes upstream
T5662 824-825 . denotes .
T5663 825-1128 sentence denotes The data set for livers of cadmium-treated Mtf1Mx-cre and Mtf1loxP mice revealed an at least 2-fold, reliable downregulation in Mtf1Mx-cre livers for 21 probe sets corresponding to 16 different characterized genes (Table 1, c); 10 of these contain MRE core consensus sequences in their upstream region.
T5664 826-829 DT denotes The
T5665 835-838 NN denotes set
T5666 830-834 NNS denotes data
T5667 898-906 VBD denotes revealed
T5668 839-842 IN denotes for
T5669 843-849 NNS denotes livers
T5670 850-852 IN denotes of
T5671 853-860 NN denotes cadmium
T5672 861-868 VBN denotes treated
T5673 860-861 HYPH denotes -
T5674 893-897 NNS denotes mice
T5675 869-875 NN denotes Mtf1Mx
T5676 876-879 NN denotes cre
T5677 875-876 HYPH denotes -
T5678 880-883 CC denotes and
T5679 884-892 NN denotes Mtf1loxP
T5680 1066-1073 VBP denotes contain
T5681 907-909 DT denotes an
T5682 936-950 NN denotes downregulation
T5683 910-912 RB denotes at
T5684 913-918 RBS denotes least
T5685 919-925 JJ denotes 2-fold
T5686 925-927 , denotes ,
T5687 927-935 JJ denotes reliable
T5688 951-953 IN denotes in
T5689 954-960 NN denotes Mtf1Mx
T5690 961-964 NN denotes cre
T5691 960-961 HYPH denotes -
T5692 965-971 NNS denotes livers
T5693 972-975 IN denotes for
T5694 976-978 CD denotes 21
T5695 985-989 NNS denotes sets
T5696 979-984 NN denotes probe
T5697 990-1003 VBG denotes corresponding
T5698 1004-1006 IN denotes to
T5699 1007-1009 CD denotes 16
T5700 1034-1039 NNS denotes genes
T5701 1010-1019 JJ denotes different
T5702 1020-1033 VBN denotes characterized
T5703 1040-1041 -LRB- denotes (
T5704 1050-1051 NN denotes c
T5705 1041-1046 NN denotes Table
T5706 1047-1048 CD denotes 1
T5707 1048-1050 , denotes ,
T5708 1051-1052 -RRB- denotes )
T5709 1052-1053 : denotes ;
T5710 1054-1056 CD denotes 10
T5711 1057-1059 IN denotes of
T5712 1060-1065 DT denotes these
T5713 1074-1077 NN denotes MRE
T5714 1093-1102 NNS denotes sequences
T5715 1078-1082 NN denotes core
T5716 1083-1092 NN denotes consensus
T5717 1103-1105 IN denotes in
T5718 1106-1111 PRP$ denotes their
T5719 1121-1127 NN denotes region
T5720 1112-1120 JJ denotes upstream
T5721 1127-1128 . denotes .
T5722 1128-1297 sentence denotes For 9 probe sets corresponding to 9 different characterized genes, an at least 2-fold, reliable upregulation was detected (Table 1, d); five of them contain MRE motifs.
T5723 1129-1132 IN denotes For
T5724 1242-1250 VBN denotes detected
T5725 1133-1134 CD denotes 9
T5726 1141-1145 NNS denotes sets
T5727 1135-1140 NN denotes probe
T5728 1146-1159 VBG denotes corresponding
T5729 1160-1162 IN denotes to
T5730 1163-1164 CD denotes 9
T5731 1189-1194 NNS denotes genes
T5732 1165-1174 JJ denotes different
T5733 1175-1188 VBN denotes characterized
T5734 1194-1196 , denotes ,
T5735 1196-1198 DT denotes an
T5736 1225-1237 NN denotes upregulation
T5737 1199-1201 RB denotes at
T5738 1202-1207 RBS denotes least
T5739 1208-1214 JJ denotes 2-fold
T5740 1214-1216 , denotes ,
T5741 1216-1224 JJ denotes reliable
T5742 1238-1241 VBD denotes was
T5743 1278-1285 VBP denotes contain
T5744 1251-1252 -LRB- denotes (
T5745 1261-1262 NN denotes d
T5746 1252-1257 NN denotes Table
T5747 1258-1259 CD denotes 1
T5748 1259-1261 , denotes ,
T5749 1262-1263 -RRB- denotes )
T5750 1263-1264 : denotes ;
T5751 1265-1269 CD denotes five
T5752 1270-1272 IN denotes of
T5753 1273-1277 PRP denotes them
T5754 1286-1289 NN denotes MRE
T5755 1290-1296 NNS denotes motifs
T5756 1296-1297 . denotes .
T5757 1297-1487 sentence denotes In addition to characterized genes, ESTs and RIKEN cDNA sequences were also found in the comparison of Mtf1Mx-cre and Mtf1loxP livers to be differentially expressed (Supplementary Table 1).
T5758 1298-1300 IN denotes In
T5759 1374-1379 VBN denotes found
T5760 1301-1309 NN denotes addition
T5761 1310-1312 IN denotes to
T5762 1313-1326 VBN denotes characterized
T5763 1327-1332 NNS denotes genes
T5764 1332-1334 , denotes ,
T5765 1334-1338 NNS denotes ESTs
T5766 1339-1342 CC denotes and
T5767 1343-1348 NN denotes RIKEN
T5768 1349-1353 NN denotes cDNA
T5769 1354-1363 NNS denotes sequences
T5770 1364-1368 VBD denotes were
T5771 1369-1373 RB denotes also
T5772 1380-1382 IN denotes in
T5773 1383-1386 DT denotes the
T5774 1387-1397 NN denotes comparison
T5775 1398-1400 IN denotes of
T5776 1401-1407 NN denotes Mtf1Mx
T5777 1408-1411 NN denotes cre
T5778 1407-1408 HYPH denotes -
T5779 1425-1431 NNS denotes livers
T5780 1412-1415 CC denotes and
T5781 1416-1424 NN denotes Mtf1loxP
T5782 1432-1434 TO denotes to
T5783 1453-1462 VBN denotes expressed
T5784 1435-1437 VB denotes be
T5785 1438-1452 RB denotes differentially
T5786 1463-1464 -LRB- denotes (
T5787 1478-1483 NN denotes Table
T5788 1464-1477 JJ denotes Supplementary
T5789 1484-1485 CD denotes 1
T5790 1485-1486 -RRB- denotes )
T5791 1486-1487 . denotes .
T5792 1487-1692 sentence denotes Downregulation of Mt1 and Mt2 was detected in Mtf1Mx-cre livers for both conditions (though the level of significance for the downregulation of Mt1 in mock-treated animals was above 0.05; data not shown).
T5793 1488-1502 NN denotes Downregulation
T5794 1522-1530 VBN denotes detected
T5795 1503-1505 IN denotes of
T5796 1506-1509 NN denotes Mt1
T5797 1510-1513 CC denotes and
T5798 1514-1517 NN denotes Mt2
T5799 1518-1521 VBD denotes was
T5800 1531-1533 IN denotes in
T5801 1534-1540 NN denotes Mtf1Mx
T5802 1541-1544 NN denotes cre
T5803 1540-1541 HYPH denotes -
T5804 1545-1551 NNS denotes livers
T5805 1552-1555 IN denotes for
T5806 1556-1560 DT denotes both
T5807 1561-1571 NNS denotes conditions
T5808 1572-1573 -LRB- denotes (
T5809 1573-1579 IN denotes though
T5810 1660-1663 VBD denotes was
T5811 1580-1583 DT denotes the
T5812 1584-1589 NN denotes level
T5813 1590-1592 IN denotes of
T5814 1593-1605 NN denotes significance
T5815 1606-1609 IN denotes for
T5816 1610-1613 DT denotes the
T5817 1614-1628 NN denotes downregulation
T5818 1629-1631 IN denotes of
T5819 1632-1635 NN denotes Mt1
T5820 1636-1638 IN denotes in
T5821 1639-1643 JJ denotes mock
T5822 1644-1651 VBN denotes treated
T5823 1643-1644 HYPH denotes -
T5824 1652-1659 NNS denotes animals
T5825 1664-1669 IN denotes above
T5826 1670-1674 CD denotes 0.05
T5827 1674-1675 : denotes ;
T5828 1676-1680 NNS denotes data
T5829 1685-1690 VBN denotes shown
T5830 1681-1684 RB denotes not
T5831 1690-1691 -RRB- denotes )
T5832 1691-1692 . denotes .
R3480 T5502 T5503 prep In,compared
R3481 T5504 T5505 det a,approach
R3482 T5505 T5502 pobj approach,In
R3483 T5506 T5505 amod second,approach
R3484 T5507 T5503 punct ", ",compared
R3485 T5508 T5509 det the,profile
R3486 T5509 T5503 nsubjpass profile,compared
R3487 T5510 T5511 compound gene,expression
R3488 T5511 T5509 compound expression,profile
R3489 T5512 T5509 prep in,profile
R3490 T5513 T5512 pobj livers,in
R3491 T5514 T5513 prep of,livers
R3492 T5515 T5516 det the,mice
R3493 T5516 T5514 pobj mice,of
R3494 T5517 T5518 advmod above,mentioned
R3495 T5518 T5516 amod mentioned,mice
R3496 T5519 T5503 auxpass was,compared
R3497 T5520 T5503 agent by,compared
R3498 T5521 T5522 nmod Affymetrix,GeneChip
R3499 T5522 T5523 nmod GeneChip,Arrays
R3500 T5523 T5520 pobj Arrays,by
R3501 T5524 T5522 punct ®,GeneChip
R3502 T5525 T5526 nmod Mouse,Genome
R3503 T5526 T5523 nmod Genome,Arrays
R3504 T5527 T5526 nummod 430,Genome
R3505 T5528 T5526 nummod 2.0,Genome
R3506 T5529 T5530 punct (,Table
R3507 T5530 T5503 parataxis Table,compared
R3508 T5531 T5530 nummod 1,Table
R3509 T5532 T5530 punct ),Table
R3510 T5533 T5503 punct .,compared
R3511 T5535 T5536 advmod When,analyzing
R3512 T5536 T5537 advcl analyzing,detected
R3513 T5538 T5539 det the,data
R3514 T5539 T5536 dobj data,analyzing
R3515 T5540 T5539 compound probe,data
R3516 T5541 T5539 compound array,data
R3517 T5542 T5539 prep of,data
R3518 T5543 T5542 pobj livers,of
R3519 T5544 T5543 prep from,livers
R3520 T5545 T5546 amod mock,treated
R3521 T5546 T5548 amod treated,mice
R3522 T5547 T5546 punct -,treated
R3523 T5548 T5544 pobj mice,from
R3524 T5549 T5550 nmod Mtf1Mx,cre
R3525 T5550 T5548 nmod cre,mice
R3526 T5551 T5550 punct -,cre
R3527 T5552 T5550 cc and,cre
R3528 T5553 T5550 conj Mtf1loxP,cre
R3529 T5554 T5537 punct ", ",detected
R3530 T5555 T5556 det an,downregulation
R3531 T5556 T5537 nsubjpass downregulation,detected
R3532 T5557 T5558 advmod at,least
R3533 T5558 T5559 advmod least,2-fold
R3534 T5559 T5556 nummod 2-fold,downregulation
R3535 T5560 T5556 punct ", ",downregulation
R3536 T5561 T5556 amod reliable,downregulation
R3537 T5562 T5556 prep of,downregulation
R3538 T5563 T5562 pobj expression,of
R3539 T5564 T5537 auxpass was,detected
R3540 T5565 T5537 prep in,detected
R3541 T5566 T5567 compound Mtf1Mx,cre
R3542 T5567 T5569 compound cre,livers
R3543 T5568 T5567 punct -,cre
R3544 T5569 T5565 pobj livers,in
R3545 T5570 T5537 prep for,detected
R3546 T5571 T5572 nummod 13,sets
R3547 T5572 T5570 pobj sets,for
R3548 T5573 T5574 nmod Affymetrix,GeneChip
R3549 T5574 T5572 nmod GeneChip,sets
R3550 T5575 T5574 punct ®,GeneChip
R3551 T5576 T5572 compound probe,sets
R3552 T5577 T5572 acl corresponding,sets
R3553 T5578 T5577 prep to,corresponding
R3554 T5579 T5580 nummod 11,genes
R3555 T5580 T5578 pobj genes,to
R3556 T5581 T5580 amod characterized,genes
R3557 T5582 T5583 punct (,a
R3558 T5583 T5537 parataxis a,detected
R3559 T5584 T5583 nmod Table,a
R3560 T5585 T5583 nummod 1,a
R3561 T5586 T5583 punct ", ",a
R3562 T5587 T5583 punct ),a
R3563 T5588 T5537 punct .,detected
R3564 T5590 T5591 nsubj Seven,contain
R3565 T5592 T5590 prep of,Seven
R3566 T5593 T5594 det these,genes
R3567 T5594 T5592 pobj genes,of
R3568 T5595 T5596 nummod one,TGCRCNC
R3569 T5596 T5591 dobj TGCRCNC,contain
R3570 T5597 T5595 cc or,one
R3571 T5598 T5595 conj more,one
R3572 T5599 T5600 compound MRE,core
R3573 T5600 T5596 compound core,TGCRCNC
R3574 T5601 T5596 compound consensus,TGCRCNC
R3575 T5602 T5596 compound sequence,TGCRCNC
R3576 T5603 T5596 prep within,TGCRCNC
R3577 T5604 T5605 det a,segment
R3578 T5605 T5603 pobj segment,within
R3579 T5606 T5605 prep of,segment
R3580 T5607 T5608 nummod 1000,bp
R3581 T5608 T5606 pobj bp,of
R3582 T5609 T5605 advmod upstream,segment
R3583 T5610 T5609 prep of,upstream
R3584 T5611 T5612 det the,start
R3585 T5612 T5610 pobj start,of
R3586 T5613 T5612 compound transcription,start
R3587 T5614 T5591 punct .,contain
R3588 T5616 T5617 prep For,detected
R3589 T5617 T5636 ccomp detected,contain
R3590 T5618 T5619 nummod 26,sets
R3591 T5619 T5616 pobj sets,For
R3592 T5620 T5619 compound probe,sets
R3593 T5621 T5619 acl corresponding,sets
R3594 T5622 T5621 prep to,corresponding
R3595 T5623 T5624 nummod 24,genes
R3596 T5624 T5622 pobj genes,to
R3597 T5625 T5624 amod different,genes
R3598 T5626 T5624 amod characterized,genes
R3599 T5627 T5617 punct ", ",detected
R3600 T5628 T5629 det a,upregulation
R3601 T5629 T5617 nsubjpass upregulation,detected
R3602 T5630 T5629 amod 2-fold,upregulation
R3603 T5631 T5630 cc or,2-fold
R3604 T5632 T5630 conj higher,2-fold
R3605 T5633 T5629 punct ", ",upregulation
R3606 T5634 T5629 amod reliable,upregulation
R3607 T5635 T5617 auxpass was,detected
R3608 T5637 T5617 prep in,detected
R3609 T5638 T5639 compound Mtf1Mx,cre
R3610 T5639 T5641 compound cre,livers
R3611 T5640 T5639 punct -,cre
R3612 T5641 T5637 pobj livers,in
R3613 T5642 T5643 punct (,b
R3614 T5643 T5641 parataxis b,livers
R3615 T5644 T5643 nmod Table,b
R3616 T5645 T5643 nummod 1,b
R3617 T5646 T5643 punct ", ",b
R3618 T5647 T5643 punct ),b
R3619 T5648 T5636 punct ;,contain
R3620 T5649 T5636 nsubj 17,contain
R3621 T5650 T5649 prep of,17
R3622 T5651 T5652 det these,genes
R3623 T5652 T5650 pobj genes,of
R3624 T5653 T5652 nummod 24,genes
R3625 T5654 T5655 compound MRE,core
R3626 T5655 T5656 compound core,sequences
R3627 T5656 T5636 dobj sequences,contain
R3628 T5657 T5656 compound consensus,sequences
R3629 T5658 T5636 prep in,contain
R3630 T5659 T5660 det the,region
R3631 T5660 T5658 pobj region,in
R3632 T5661 T5660 amod upstream,region
R3633 T5662 T5636 punct .,contain
R3634 T5664 T5665 det The,set
R3635 T5665 T5667 nsubj set,revealed
R3636 T5666 T5665 compound data,set
R3638 T5668 T5665 prep for,set
R3639 T5669 T5668 pobj livers,for
R3640 T5670 T5669 prep of,livers
R3641 T5671 T5672 npadvmod cadmium,treated
R3642 T5672 T5674 amod treated,mice
R3643 T5673 T5672 punct -,treated
R3644 T5674 T5670 pobj mice,of
R3645 T5675 T5676 nmod Mtf1Mx,cre
R3646 T5676 T5674 nmod cre,mice
R3647 T5677 T5676 punct -,cre
R3648 T5678 T5676 cc and,cre
R3649 T5679 T5676 conj Mtf1loxP,cre
R3650 T5681 T5682 det an,downregulation
R3651 T5682 T5667 dobj downregulation,revealed
R3652 T5683 T5684 advmod at,least
R3653 T5684 T5685 advmod least,2-fold
R3654 T5685 T5682 amod 2-fold,downregulation
R3655 T5686 T5682 punct ", ",downregulation
R3656 T5687 T5682 amod reliable,downregulation
R3657 T5688 T5667 prep in,revealed
R3658 T5689 T5690 compound Mtf1Mx,cre
R3659 T5690 T5692 compound cre,livers
R3660 T5691 T5690 punct -,cre
R3661 T5692 T5688 pobj livers,in
R3662 T5693 T5667 prep for,revealed
R3663 T5694 T5695 nummod 21,sets
R3664 T5695 T5693 pobj sets,for
R3665 T5696 T5695 compound probe,sets
R3666 T5697 T5695 acl corresponding,sets
R3667 T5698 T5697 prep to,corresponding
R3668 T5699 T5700 nummod 16,genes
R3669 T5700 T5698 pobj genes,to
R3670 T5701 T5700 amod different,genes
R3671 T5702 T5700 amod characterized,genes
R3672 T5703 T5704 punct (,c
R3673 T5704 T5667 parataxis c,revealed
R3674 T5705 T5704 nmod Table,c
R3675 T5706 T5704 nummod 1,c
R3676 T5707 T5704 punct ", ",c
R3677 T5708 T5704 punct ),c
R3678 T5709 T5680 punct ;,contain
R3679 T5710 T5680 nsubj 10,contain
R3680 T5711 T5710 prep of,10
R3681 T5712 T5711 pobj these,of
R3682 T5713 T5714 compound MRE,sequences
R3683 T5714 T5680 dobj sequences,contain
R3684 T5715 T5714 compound core,sequences
R3685 T5716 T5714 compound consensus,sequences
R3686 T5717 T5680 prep in,contain
R3687 T5718 T5719 poss their,region
R3688 T5719 T5717 pobj region,in
R3689 T5720 T5719 amod upstream,region
R3690 T5721 T5680 punct .,contain
R3691 T5723 T5724 prep For,detected
R3692 T5724 T5743 ccomp detected,contain
R3693 T5725 T5726 nummod 9,sets
R3694 T5726 T5723 pobj sets,For
R3695 T5727 T5726 compound probe,sets
R3696 T5728 T5726 acl corresponding,sets
R3697 T5729 T5728 prep to,corresponding
R3698 T5730 T5731 nummod 9,genes
R3699 T5731 T5729 pobj genes,to
R3700 T5732 T5731 amod different,genes
R3701 T5733 T5731 amod characterized,genes
R3702 T5734 T5724 punct ", ",detected
R3703 T5735 T5736 det an,upregulation
R3704 T5736 T5724 nsubjpass upregulation,detected
R3705 T5737 T5738 advmod at,least
R3706 T5738 T5739 advmod least,2-fold
R3707 T5739 T5736 nummod 2-fold,upregulation
R3708 T5740 T5736 punct ", ",upregulation
R3709 T5741 T5736 amod reliable,upregulation
R3710 T5742 T5724 auxpass was,detected
R3711 T5744 T5745 punct (,d
R3712 T5745 T5724 parataxis d,detected
R3713 T5746 T5745 nmod Table,d
R3714 T5747 T5745 nummod 1,d
R3715 T5748 T5745 punct ", ",d
R3716 T5749 T5745 punct ),d
R3717 T5750 T5743 punct ;,contain
R3718 T5751 T5743 nsubj five,contain
R3719 T5752 T5751 prep of,five
R3720 T5753 T5752 pobj them,of
R3721 T5754 T5755 compound MRE,motifs
R3722 T5755 T5743 dobj motifs,contain
R3723 T5756 T5743 punct .,contain
R3724 T5758 T5759 prep In,found
R3725 T5760 T5758 pobj addition,In
R3726 T5761 T5760 prep to,addition
R3727 T5762 T5763 amod characterized,genes
R3728 T5763 T5761 pobj genes,to
R3729 T5764 T5759 punct ", ",found
R3730 T5765 T5759 nsubjpass ESTs,found
R3731 T5766 T5765 cc and,ESTs
R3732 T5767 T5768 compound RIKEN,cDNA
R3733 T5768 T5769 compound cDNA,sequences
R3734 T5769 T5765 conj sequences,ESTs
R3735 T5770 T5759 auxpass were,found
R3736 T5771 T5759 advmod also,found
R3737 T5772 T5759 prep in,found
R3738 T5773 T5774 det the,comparison
R3739 T5774 T5772 pobj comparison,in
R3740 T5775 T5774 prep of,comparison
R3741 T5776 T5777 nmod Mtf1Mx,cre
R3742 T5777 T5779 nmod cre,livers
R3743 T5778 T5777 punct -,cre
R3744 T5779 T5775 pobj livers,of
R3745 T5780 T5777 cc and,cre
R3746 T5781 T5777 conj Mtf1loxP,cre
R3747 T5782 T5783 aux to,expressed
R3748 T5783 T5759 xcomp expressed,found
R3749 T5784 T5783 auxpass be,expressed
R3750 T5785 T5783 advmod differentially,expressed
R3751 T5786 T5787 punct (,Table
R3752 T5787 T5759 parataxis Table,found
R3753 T5788 T5787 amod Supplementary,Table
R3754 T5789 T5787 nummod 1,Table
R3755 T5790 T5787 punct ),Table
R3756 T5791 T5759 punct .,found
R3757 T5793 T5794 nsubjpass Downregulation,detected
R3758 T5795 T5793 prep of,Downregulation
R3759 T5796 T5795 pobj Mt1,of
R3760 T5797 T5796 cc and,Mt1
R3761 T5798 T5796 conj Mt2,Mt1
R3762 T5799 T5794 auxpass was,detected
R3763 T5800 T5794 prep in,detected
R3764 T5801 T5802 compound Mtf1Mx,cre
R3765 T5802 T5804 compound cre,livers
R3766 T5803 T5802 punct -,cre
R3767 T5804 T5800 pobj livers,in
R3768 T5805 T5794 prep for,detected
R3769 T5806 T5807 det both,conditions
R3770 T5807 T5805 pobj conditions,for
R3771 T5808 T5794 punct (,detected
R3772 T5809 T5810 mark though,was
R3773 T5810 T5794 advcl was,detected
R3774 T5811 T5812 det the,level
R3775 T5812 T5810 nsubj level,was
R3776 T5813 T5812 prep of,level
R3777 T5814 T5813 pobj significance,of
R3778 T5815 T5812 prep for,level
R3779 T5816 T5817 det the,downregulation
R3780 T5817 T5815 pobj downregulation,for
R3781 T5818 T5817 prep of,downregulation
R3782 T5819 T5818 pobj Mt1,of
R3783 T5820 T5812 prep in,level
R3784 T5821 T5822 amod mock,treated
R3785 T5822 T5824 amod treated,animals
R3786 T5823 T5822 punct -,treated
R3787 T5824 T5820 pobj animals,in
R3788 T5825 T5826 quantmod above,0.05
R3789 T5826 T5810 attr 0.05,was
R3790 T5827 T5810 punct ;,was
R3791 T5828 T5829 nsubj data,shown
R3792 T5829 T5810 parataxis shown,was
R3793 T5830 T5829 neg not,shown
R3794 T5831 T5794 punct ),detected
R3795 T5832 T5794 punct .,detected
R3637 T5667 T5680 ccomp revealed,contain

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5150 26-30 SO:0000704 denotes gene
T5151 26-41 GO:0010467 denotes gene expression
T5152 53-59 UBERON:0002107 denotes livers
T5153 83-87 NCBITaxon:10088 denotes mice
T5154 125-130 NCBITaxon:10088 denotes Mouse
T5155 131-137 SO:0001026 denotes Genome
T5156 203-209 UBERON:0002107 denotes livers
T5157 228-232 PR:000010717 denotes Mtf1
T5158 232-234 PR:000010788 denotes Mx
T5159 243-247 PR:000010717 denotes Mtf1
T5160 247-251 SO:0000346 denotes loxP
T5161 252-256 NCBITaxon:10088 denotes mice
T5162 287-315 GO:0010629 denotes downregulation of expression
T5163 332-336 PR:000010717 denotes Mtf1
T5164 336-338 PR:000010788 denotes Mx
T5165 343-349 UBERON:0002107 denotes livers
T5166 423-428 SO:0000704 denotes genes
T5167 458-463 SO:0000704 denotes genes
T5168 493-502 SO:0000993 denotes consensus
T5169 545-547 SO:0000028 denotes bp
T5170 647-652 SO:0000704 denotes genes
T5171 712-716 PR:000010717 denotes Mtf1
T5172 716-718 PR:000010788 denotes Mx
T5173 723-729 UBERON:0002107 denotes livers
T5174 759-764 SO:0000704 denotes genes
T5175 782-791 SO:0000993 denotes consensus
T5176 843-849 UBERON:0002107 denotes livers
T5177 869-873 PR:000010717 denotes Mtf1
T5178 873-875 PR:000010788 denotes Mx
T5179 884-888 PR:000010717 denotes Mtf1
T5180 888-892 SO:0000346 denotes loxP
T5181 893-897 NCBITaxon:10088 denotes mice
T5182 954-958 PR:000010717 denotes Mtf1
T5183 958-960 PR:000010788 denotes Mx
T5184 965-971 UBERON:0002107 denotes livers
T5185 1034-1039 SO:0000704 denotes genes
T5186 1083-1092 SO:0000993 denotes consensus
T5187 1189-1194 SO:0000704 denotes genes
T5188 1327-1332 SO:0000704 denotes genes
T5189 1334-1338 SO:0000345 denotes ESTs
T5190 1401-1405 PR:000010717 denotes Mtf1
T5191 1405-1407 PR:000010788 denotes Mx
T5192 1416-1420 PR:000010717 denotes Mtf1
T5193 1420-1424 SO:0000346 denotes loxP
T5194 1425-1431 UBERON:0002107 denotes livers
T5195 1453-1462 GO:0010467 denotes expressed
T5196 1506-1509 PR:000010925 denotes Mt1
T5197 1514-1517 PR:000010704 denotes Mt2
T5198 1534-1538 PR:000010717 denotes Mtf1
T5199 1538-1540 PR:000010788 denotes Mx
T5200 1545-1551 UBERON:0002107 denotes livers
T5201 1632-1635 PR:000010925 denotes Mt1
T5202 1652-1659 NCBITaxon:33208 denotes animals

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5241 26-30 SO_EXT:0000704 denotes gene
T5242 26-41 GO:0010467 denotes gene expression
T5243 53-59 UBERON:0002107 denotes livers
T5244 83-87 NCBITaxon:10088 denotes mice
T5245 125-130 NCBITaxon:10088 denotes Mouse
T5246 131-137 SO_EXT:0001026 denotes Genome
T5247 183-188 CHEBI_SO_EXT:molecular_probe denotes probe
T5248 203-209 UBERON:0002107 denotes livers
T5249 228-232 PR_EXT:000010717 denotes Mtf1
T5250 232-234 PR_EXT:000010788 denotes Mx
T5251 243-247 PR_EXT:000010717 denotes Mtf1
T5252 247-251 SO_EXT:0000346 denotes loxP
T5253 252-256 NCBITaxon:10088 denotes mice
T5254 287-315 GO:0010629 denotes downregulation of expression
T5255 332-336 PR_EXT:000010717 denotes Mtf1
T5256 336-338 PR_EXT:000010788 denotes Mx
T5257 343-349 UBERON:0002107 denotes livers
T5258 378-383 CHEBI_SO_EXT:molecular_probe denotes probe
T5259 423-428 SO_EXT:0000704 denotes genes
T5260 458-463 SO_EXT:0000704 denotes genes
T5261 493-502 SO:0000993 denotes consensus
T5262 503-511 SO_EXT:biological_sequence denotes sequence
T5263 545-547 SO_EXT:0000028 denotes bp
T5264 548-556 SO_EXT:sequence_upstreamness denotes upstream
T5265 564-583 GO_SO_EXT:transcriptional_start_entity_or_process denotes transcription start
T5266 592-597 CHEBI_SO_EXT:molecular_probe denotes probe
T5267 647-652 SO_EXT:0000704 denotes genes
T5268 683-695 GO_EXT:positive_regulation denotes upregulation
T5269 712-716 PR_EXT:000010717 denotes Mtf1
T5270 716-718 PR_EXT:000010788 denotes Mx
T5271 723-729 UBERON:0002107 denotes livers
T5272 759-764 SO_EXT:0000704 denotes genes
T5273 782-791 SO:0000993 denotes consensus
T5274 792-801 SO_EXT:biological_sequence denotes sequences
T5275 809-817 SO_EXT:sequence_upstreamness denotes upstream
T5276 843-849 UBERON:0002107 denotes livers
T5277 853-860 CHEBI_EXT:cadmium denotes cadmium
T5278 869-873 PR_EXT:000010717 denotes Mtf1
T5279 873-875 PR_EXT:000010788 denotes Mx
T5280 884-888 PR_EXT:000010717 denotes Mtf1
T5281 888-892 SO_EXT:0000346 denotes loxP
T5282 893-897 NCBITaxon:10088 denotes mice
T5283 936-950 GO_EXT:negative_regulation denotes downregulation
T5284 954-958 PR_EXT:000010717 denotes Mtf1
T5285 958-960 PR_EXT:000010788 denotes Mx
T5286 965-971 UBERON:0002107 denotes livers
T5287 979-984 CHEBI_SO_EXT:molecular_probe denotes probe
T5288 1034-1039 SO_EXT:0000704 denotes genes
T5289 1083-1092 SO:0000993 denotes consensus
T5290 1093-1102 SO_EXT:biological_sequence denotes sequences
T5291 1112-1120 SO_EXT:sequence_upstreamness denotes upstream
T5292 1135-1140 CHEBI_SO_EXT:molecular_probe denotes probe
T5293 1189-1194 SO_EXT:0000704 denotes genes
T5294 1225-1237 GO_EXT:positive_regulation denotes upregulation
T5295 1290-1296 SO_EXT:sequence_or_structure_motif denotes motifs
T5296 1327-1332 SO_EXT:0000704 denotes genes
T5297 1334-1338 SO_EXT:0000345 denotes ESTs
T5298 1349-1353 SO_EXT:cDNA denotes cDNA
T5299 1354-1363 SO_EXT:biological_sequence denotes sequences
T5300 1401-1405 PR_EXT:000010717 denotes Mtf1
T5301 1405-1407 PR_EXT:000010788 denotes Mx
T5302 1416-1420 PR_EXT:000010717 denotes Mtf1
T5303 1420-1424 SO_EXT:0000346 denotes loxP
T5304 1425-1431 UBERON:0002107 denotes livers
T5305 1453-1462 GO:0010467 denotes expressed
T5306 1488-1502 GO_EXT:negative_regulation denotes Downregulation
T5307 1506-1509 PR_EXT:000010925 denotes Mt1
T5308 1514-1517 PR_EXT:000010704 denotes Mt2
T5309 1534-1538 PR_EXT:000010717 denotes Mtf1
T5310 1538-1540 PR_EXT:000010788 denotes Mx
T5311 1545-1551 UBERON:0002107 denotes livers
T5312 1614-1628 GO_EXT:negative_regulation denotes downregulation
T5313 1632-1635 PR_EXT:000010925 denotes Mt1
T5314 1652-1659 NCBITaxon:33208 denotes animals