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PMC:1253828 / 10378-10897 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T3137 0-2 NN denotes S1
T3138 12-19 NN denotes mapping
T3139 3-11 NN denotes nuclease
T3140 20-22 IN denotes of
T3141 23-34 NNS denotes transcripts
T3142 35-36 -LRB- denotes (
T3143 39-47 NN denotes analysis
T3144 36-38 NN denotes S1
T3145 47-48 -RRB- denotes )
T3146 48-185 sentence denotes S1 analysis was performed as previously described (29), using 100 µg DNase I-digested total RNA (RNA isolation see microarray analysis).
T3147 49-51 NN denotes S1
T3148 52-60 NN denotes analysis
T3149 65-74 VBN denotes performed
T3150 61-64 VBD denotes was
T3151 75-77 IN denotes as
T3152 89-98 VBN denotes described
T3153 78-88 RB denotes previously
T3154 99-100 -LRB- denotes (
T3155 100-102 CD denotes 29
T3156 102-103 -RRB- denotes )
T3157 103-105 , denotes ,
T3158 105-110 VBG denotes using
T3159 111-114 CD denotes 100
T3160 115-117 NN denotes µg
T3161 141-144 NN denotes RNA
T3162 118-123 NN denotes DNase
T3163 126-134 VBN denotes digested
T3184 232-241 NNP denotes Molecular
T3196 293-296 NN denotes 32P
T3164 124-125 CD denotes I
T3165 125-126 HYPH denotes -
T3166 135-140 JJ denotes total
T3167 145-146 -LRB- denotes (
T3168 160-163 VBP denotes see
T3169 146-149 NN denotes RNA
T3170 150-159 NN denotes isolation
T3171 164-174 NN denotes microarray
T3172 175-183 NN denotes analysis
T3173 183-184 -RRB- denotes )
T3174 184-185 . denotes .
T3175 185-252 sentence denotes The gels were developed using PhosphorImager (Molecular Dynamics).
T3176 186-189 DT denotes The
T3177 190-194 NNS denotes gels
T3178 200-209 VBN denotes developed
T3179 195-199 VBD denotes were
T3180 210-215 VBG denotes using
T3181 216-230 NNP denotes PhosphorImager
T3182 231-232 -LRB- denotes (
T3183 242-250 NNP denotes Dynamics
T3185 250-251 -RRB- denotes )
T3186 251-252 . denotes .
T3187 252-519 sentence denotes S1 analysis was done with the following 32P-labeled oligonucleotides: Hprt S1: 5′-TCTTCAGTCTGATAAAATCTACAGTCATAGGAATGGATCTATCACTATTTCTATTCAGTGATTACATTAAAG-3′, Sepw1 S1: 5′-TTCAACCGGGAACACCTGGAAACATGGCTGCCTGTCTTCTTGAAGTCTTGAGGTGGAAAGGGAAAGCAAAGCAGGAGGGTTTTCCCACCC-3′.
T3188 253-255 NN denotes S1
T3189 256-264 NN denotes analysis
T3190 269-273 VBN denotes done
T3191 265-268 VBD denotes was
T3192 274-278 IN denotes with
T3193 279-282 DT denotes the
T3194 305-321 NNS denotes oligonucleotides
T3195 283-292 VBG denotes following
T3197 297-304 VBN denotes labeled
T3198 296-297 HYPH denotes -
T3199 321-323 : denotes :
T3200 323-327 NN denotes Hprt
T3201 328-330 NN denotes S1
T3202 330-332 : denotes :
T3203 332-333 CD denotes 5
T3204 335-407 NN denotes TCTTCAGTCTGATAAAATCTACAGTCATAGGAATGGATCTATCACTATTTCTATTCAGTGATTACATTAAAG
T3205 333-334 SYM denotes ′
T3206 334-335 HYPH denotes -
T3207 407-408 HYPH denotes -
T3208 408-409 CD denotes 3
T3209 409-410 SYM denotes ′
T3210 410-412 , denotes ,
T3211 412-417 NN denotes Sepw1
T3212 418-420 NN denotes S1
T3213 420-422 : denotes :
T3214 422-423 CD denotes 5
T3215 425-515 NN denotes TTCAACCGGGAACACCTGGAAACATGGCTGCCTGTCTTCTTGAAGTCTTGAGGTGGAAAGGGAAAGCAAAGCAGGAGGGTTTTCCCACCC
T3216 423-424 SYM denotes ′
T3217 424-425 HYPH denotes -
T3218 515-516 HYPH denotes -
T3219 516-517 CD denotes 3
T3220 517-518 SYM denotes ′
T3221 518-519 . denotes .
R2009 T3137 T3138 compound S1,mapping
R2010 T3139 T3138 compound nuclease,mapping
R2011 T3140 T3138 prep of,mapping
R2012 T3141 T3140 pobj transcripts,of
R2013 T3142 T3143 punct (,analysis
R2014 T3143 T3138 parataxis analysis,mapping
R2015 T3144 T3143 compound S1,analysis
R2016 T3145 T3143 punct ),analysis
R2017 T3147 T3148 compound S1,analysis
R2018 T3148 T3149 nsubjpass analysis,performed
R2019 T3150 T3149 auxpass was,performed
R2020 T3151 T3152 mark as,described
R2021 T3152 T3149 advcl described,performed
R2022 T3153 T3152 advmod previously,described
R2023 T3154 T3155 punct (,29
R2024 T3155 T3152 parataxis 29,described
R2025 T3156 T3155 punct ),29
R2026 T3157 T3149 punct ", ",performed
R2027 T3158 T3149 advcl using,performed
R2028 T3159 T3160 nummod 100,µg
R2029 T3160 T3161 nmod µg,RNA
R2030 T3161 T3158 dobj RNA,using
R2031 T3162 T3163 npadvmod DNase,digested
R2032 T3163 T3161 amod digested,RNA
R2033 T3164 T3162 nummod I,DNase
R2034 T3165 T3163 punct -,digested
R2035 T3166 T3161 amod total,RNA
R2036 T3167 T3168 punct (,see
R2037 T3168 T3161 parataxis see,RNA
R2038 T3169 T3170 compound RNA,isolation
R2039 T3170 T3168 nsubj isolation,see
R2040 T3171 T3172 compound microarray,analysis
R2041 T3172 T3168 dobj analysis,see
R2042 T3173 T3168 punct ),see
R2043 T3174 T3149 punct .,performed
R2044 T3176 T3177 det The,gels
R2045 T3177 T3178 nsubjpass gels,developed
R2046 T3179 T3178 auxpass were,developed
R2047 T3180 T3178 advcl using,developed
R2048 T3181 T3180 dobj PhosphorImager,using
R2049 T3182 T3183 punct (,Dynamics
R2050 T3183 T3178 parataxis Dynamics,developed
R2051 T3184 T3183 compound Molecular,Dynamics
R2052 T3185 T3183 punct ),Dynamics
R2053 T3186 T3178 punct .,developed
R2054 T3188 T3189 compound S1,analysis
R2055 T3189 T3190 nsubjpass analysis,done
R2056 T3191 T3190 auxpass was,done
R2057 T3192 T3190 prep with,done
R2058 T3193 T3194 det the,oligonucleotides
R2059 T3194 T3192 pobj oligonucleotides,with
R2060 T3195 T3194 amod following,oligonucleotides
R2061 T3196 T3197 npadvmod 32P,labeled
R2062 T3197 T3194 amod labeled,oligonucleotides
R2063 T3198 T3197 punct -,labeled
R2064 T3199 T3194 punct : ,oligonucleotides
R2065 T3200 T3201 compound Hprt,S1
R2066 T3201 T3194 appos S1,oligonucleotides
R2067 T3202 T3201 punct : ,S1
R2068 T3203 T3204 nummod 5,TCTTCAGTCTGATAAAATCTACAGTCATAGGAATGGATCTATCACTATTTCTATTCAGTGATTACATTAAAG
R2069 T3204 T3201 appos TCTTCAGTCTGATAAAATCTACAGTCATAGGAATGGATCTATCACTATTTCTATTCAGTGATTACATTAAAG,S1
R2070 T3205 T3203 punct ′,5
R2071 T3206 T3204 punct -,TCTTCAGTCTGATAAAATCTACAGTCATAGGAATGGATCTATCACTATTTCTATTCAGTGATTACATTAAAG
R2072 T3207 T3204 punct -,TCTTCAGTCTGATAAAATCTACAGTCATAGGAATGGATCTATCACTATTTCTATTCAGTGATTACATTAAAG
R2073 T3208 T3204 nummod 3,TCTTCAGTCTGATAAAATCTACAGTCATAGGAATGGATCTATCACTATTTCTATTCAGTGATTACATTAAAG
R2074 T3209 T3204 punct ′,TCTTCAGTCTGATAAAATCTACAGTCATAGGAATGGATCTATCACTATTTCTATTCAGTGATTACATTAAAG
R2075 T3210 T3201 punct ", ",S1
R2076 T3211 T3212 compound Sepw1,S1
R2077 T3212 T3201 appos S1,S1
R2078 T3213 T3212 punct : ,S1
R2079 T3214 T3215 nummod 5,TTCAACCGGGAACACCTGGAAACATGGCTGCCTGTCTTCTTGAAGTCTTGAGGTGGAAAGGGAAAGCAAAGCAGGAGGGTTTTCCCACCC
R2080 T3215 T3212 appos TTCAACCGGGAACACCTGGAAACATGGCTGCCTGTCTTCTTGAAGTCTTGAGGTGGAAAGGGAAAGCAAAGCAGGAGGGTTTTCCCACCC,S1
R2081 T3216 T3214 punct ′,5
R2082 T3217 T3215 punct -,TTCAACCGGGAACACCTGGAAACATGGCTGCCTGTCTTCTTGAAGTCTTGAGGTGGAAAGGGAAAGCAAAGCAGGAGGGTTTTCCCACCC
R2083 T3218 T3215 punct -,TTCAACCGGGAACACCTGGAAACATGGCTGCCTGTCTTCTTGAAGTCTTGAGGTGGAAAGGGAAAGCAAAGCAGGAGGGTTTTCCCACCC
R2084 T3219 T3215 nummod 3,TTCAACCGGGAACACCTGGAAACATGGCTGCCTGTCTTCTTGAAGTCTTGAGGTGGAAAGGGAAAGCAAAGCAGGAGGGTTTTCCCACCC
R2085 T3220 T3215 punct ′,TTCAACCGGGAACACCTGGAAACATGGCTGCCTGTCTTCTTGAAGTCTTGAGGTGGAAAGGGAAAGCAAAGCAGGAGGGTTTTCCCACCC
R2086 T3221 T3190 punct .,done

2_test

Id Subject Object Predicate Lexical cue
16221973-390497-77403415 100-102 390497 denotes 29

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T3222 0-11 PR:000025471 denotes S1 nuclease
T3223 23-34 SO:0000673 denotes transcripts
T3224 36-38 PR:000025471 denotes S1
T3225 49-51 PR:000025471 denotes S1
T3226 253-255 PR:000025471 denotes S1
T3227 293-296 CHEBI:37972 denotes 32P
T3228 328-330 PR:000025471 denotes S1
T3229 412-417 PR:000014662 denotes Sepw1
T3230 418-420 PR:000025471 denotes S1

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T3231 0-11 PR_EXT:000025471 denotes S1 nuclease
T3232 3-11 GO_EXT:0004518 denotes nuclease
T3233 23-34 SO_EXT:0000673 denotes transcripts
T3234 36-38 PR_EXT:000025471 denotes S1
T3235 49-51 PR_EXT:000025471 denotes S1
T3236 118-125 GO_PR_EXT:deoxyribonuclease_I denotes DNase I
T3237 141-144 CHEBI_SO_EXT:RNA denotes RNA
T3238 146-149 CHEBI_SO_EXT:RNA denotes RNA
T3239 232-241 CHEBI_EXT:polyatomic_entity_or_group denotes Molecular
T3240 253-255 PR_EXT:000025471 denotes S1
T3241 293-296 CHEBI:37972 denotes 32P
T3242 297-304 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T3243 305-321 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotides
T3244 323-327 GO_PR_EXT:hypoxanthine_guanine_phosphoribosyltransferase denotes Hprt
T3245 328-330 PR_EXT:000025471 denotes S1
T3246 412-417 PR_EXT:000014662 denotes Sepw1
T3247 418-420 PR_EXT:000025471 denotes S1