PMC:1208879 / 5135-5683 JSONTXT

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    craft-sa-dev

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we report the preliminary results of the first systematic screen for proteins that interact with PAX6. We used sequence alignment algorithms and secondary structure prediction programs to define a new domain of 32 amino acids at the C-terminal end of the PAX6 protein. We then screened a brain library with this peptide using the yeast two-hybrid technique and identified three novel interacting proteins, HOMER3, DNCL1 and TRIM11. The interaction between PAX6 and these proteins was disrupted by naturally occurring C-terminal PAX6 mutations."}

    craft-ca-core-ex-dev

    {"project":"craft-ca-core-ex-dev","denotations":[{"id":"T814","span":{"begin":74,"end":82},"obj":"CHEBI_PR_EXT:protein"},{"id":"T815","span":{"begin":102,"end":106},"obj":"PR_EXT:000012318"},{"id":"T816","span":{"begin":116,"end":124},"obj":"SO_EXT:biological_sequence"},{"id":"T817","span":{"begin":206,"end":212},"obj":"SO_EXT:0000417"},{"id":"T818","span":{"begin":219,"end":230},"obj":"CHEBI_SO_EXT:amino_acid"},{"id":"T819","span":{"begin":238,"end":248},"obj":"CHEBI_SO_EXT:C_terminus_or_C_terminal_region"},{"id":"T820","span":{"begin":260,"end":264},"obj":"PR_EXT:000012318"},{"id":"T821","span":{"begin":265,"end":272},"obj":"CHEBI_PR_EXT:protein"},{"id":"T822","span":{"begin":293,"end":298},"obj":"UBERON:0000955"},{"id":"T823","span":{"begin":317,"end":324},"obj":"CHEBI_SO_EXT:peptide_or_peptide_region"},{"id":"T824","span":{"begin":335,"end":340},"obj":"NCBITaxon_EXT:yeast"},{"id":"T825","span":{"begin":401,"end":409},"obj":"CHEBI_PR_EXT:protein"},{"id":"T826","span":{"begin":411,"end":417},"obj":"PR_EXT:000008680"},{"id":"T827","span":{"begin":419,"end":424},"obj":"PR_EXT:000002325"},{"id":"T828","span":{"begin":429,"end":435},"obj":"PR_EXT:000016642"},{"id":"T829","span":{"begin":461,"end":465},"obj":"PR_EXT:000012318"},{"id":"T830","span":{"begin":476,"end":484},"obj":"CHEBI_PR_EXT:protein"},{"id":"T831","span":{"begin":522,"end":532},"obj":"CHEBI_SO_EXT:C_terminus_or_C_terminal_region"},{"id":"T832","span":{"begin":533,"end":537},"obj":"PR_EXT:000012318"},{"id":"T833","span":{"begin":538,"end":547},"obj":"SO_EXT:sequence_alteration_entity_or_process"}],"text":"Here we report the preliminary results of the first systematic screen for proteins that interact with PAX6. We used sequence alignment algorithms and secondary structure prediction programs to define a new domain of 32 amino acids at the C-terminal end of the PAX6 protein. We then screened a brain library with this peptide using the yeast two-hybrid technique and identified three novel interacting proteins, HOMER3, DNCL1 and TRIM11. The interaction between PAX6 and these proteins was disrupted by naturally occurring C-terminal PAX6 mutations."}

    craft-ca-core-dev

    {"project":"craft-ca-core-dev","denotations":[{"id":"T656","span":{"begin":102,"end":106},"obj":"PR:000012318"},{"id":"T657","span":{"begin":206,"end":212},"obj":"SO:0000417"},{"id":"T658","span":{"begin":260,"end":264},"obj":"PR:000012318"},{"id":"T659","span":{"begin":293,"end":298},"obj":"UBERON:0000955"},{"id":"T660","span":{"begin":411,"end":417},"obj":"PR:000008680"},{"id":"T661","span":{"begin":419,"end":424},"obj":"PR:000002325"},{"id":"T662","span":{"begin":429,"end":435},"obj":"PR:000016642"},{"id":"T663","span":{"begin":461,"end":465},"obj":"PR:000012318"},{"id":"T664","span":{"begin":533,"end":537},"obj":"PR:000012318"}],"text":"Here we report the preliminary results of the first systematic screen for proteins that interact with PAX6. We used sequence alignment algorithms and secondary structure prediction programs to define a new domain of 32 amino acids at the C-terminal end of the PAX6 protein. We then screened a brain library with this peptide using the yeast two-hybrid technique and identified three novel interacting proteins, HOMER3, DNCL1 and TRIM11. The interaction between PAX6 and these proteins was disrupted by naturally occurring C-terminal PAX6 mutations."}