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PMC:1208879 / 25323-25698 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T6664 374-375 . denotes .
T6663 373-374 -RRB- denotes ]
T6662 370-371 , denotes ,
T6661 368-370 CD denotes 25
T6660 371-373 CD denotes 26
T6659 367-368 -LRB- denotes [
T6658 350-359 NN denotes consensus
T6657 344-349 NN denotes JPRED
T6656 360-366 NN denotes method
T6655 340-343 DT denotes the
T6654 334-339 VBG denotes using
T6653 320-323 VBD denotes was
T6652 324-333 VBN denotes performed
T6651 309-319 NN denotes prediction
T6650 299-308 NN denotes structure
T6649 289-298 JJ denotes Secondary
T6648 288-375 sentence denotes Secondary structure prediction was performed using the JPRED consensus method [25,26].
T6647 287-288 . denotes .
T6646 286-287 -RRB- denotes ]
T6645 284-286 CD denotes 24
T6644 283-284 -LRB- denotes [
T6643 275-282 NNP denotes CLUSTAL
T6642 269-274 VBG denotes using
T6641 256-260 VBD denotes were
T6640 251-255 NN denotes PAX6
T6639 245-250 JJ denotes human
T6638 242-244 IN denotes of
T6637 232-233 HYPH denotes -
T6636 231-232 NN denotes C
T6635 233-241 NN denotes terminus
T6634 227-230 DT denotes the
T6633 224-226 IN denotes to
T6632 213-223 JJ denotes homologous
T6631 206-212 RB denotes highly
T6630 201-205 VBD denotes were
T6629 196-200 WDT denotes that
T6628 261-268 VBN denotes aligned
T6627 186-195 NNS denotes sequences
T6626 178-185 NN denotes Protein
T6625 177-288 sentence denotes Protein sequences that were highly homologous to the C-terminus of human PAX6 were aligned using CLUSTAL [24].
T6624 176-177 . denotes .
T6623 175-176 -RRB- denotes ]
T6622 173-175 CD denotes 24
T6621 172-173 -LRB- denotes [
T6620 163-171 NNP denotes Research
T6619 154-162 NNP denotes Genomics
T6618 150-153 IN denotes for
T6617 134-142 NNP denotes Franklin
T6616 125-133 NNP denotes Rosalind
T6615 143-149 NNP denotes Centre
T6614 121-124 DT denotes the
T6613 118-120 IN denotes at
T6612 90-104 NNP denotes Bioinformatics
T6611 105-117 NNP denotes Applications
T6610 86-89 DT denotes the
T6609 78-85 IN denotes through
T6608 68-77 JJ denotes available
T6607 54-59 NNP denotes BLAST
T6606 60-67 NN denotes program
T6605 50-53 DT denotes the
T6604 44-49 VBG denotes using
T6603 40-43 RP denotes out
T6602 27-31 VBD denotes were
T6601 32-39 VBN denotes carried
T6600 9-17 NN denotes database
T6599 18-26 NNS denotes searches
T6598 0-8 NN denotes Sequence
R4138 T6598 T6599 compound Sequence,searches
R4139 T6599 T6601 nsubjpass searches,carried
R4140 T6600 T6599 compound database,searches
R4141 T6602 T6601 auxpass were,carried
R4142 T6603 T6601 prt out,carried
R4143 T6604 T6601 advcl using,carried
R4144 T6605 T6606 det the,program
R4145 T6606 T6604 dobj program,using
R4146 T6607 T6606 compound BLAST,program
R4147 T6608 T6606 amod available,program
R4148 T6609 T6608 prep through,available
R4149 T6610 T6611 det the,Applications
R4150 T6611 T6609 pobj Applications,through
R4151 T6612 T6611 compound Bioinformatics,Applications
R4152 T6613 T6611 prep at,Applications
R4153 T6614 T6615 det the,Centre
R4154 T6615 T6613 pobj Centre,at
R4155 T6616 T6617 compound Rosalind,Franklin
R4156 T6617 T6615 compound Franklin,Centre
R4157 T6618 T6615 prep for,Centre
R4158 T6619 T6620 compound Genomics,Research
R4159 T6620 T6618 pobj Research,for
R4160 T6621 T6622 punct [,24
R4161 T6622 T6601 parataxis 24,carried
R4162 T6623 T6622 punct ],24
R4163 T6624 T6601 punct .,carried
R4164 T6626 T6627 compound Protein,sequences
R4165 T6627 T6628 nsubjpass sequences,aligned
R4166 T6629 T6630 dep that,were
R4167 T6630 T6627 relcl were,sequences
R4168 T6631 T6632 advmod highly,homologous
R4169 T6632 T6630 acomp homologous,were
R4170 T6633 T6632 prep to,homologous
R4171 T6634 T6635 det the,terminus
R4172 T6635 T6633 pobj terminus,to
R4173 T6636 T6635 compound C,terminus
R4174 T6637 T6635 punct -,terminus
R4175 T6638 T6635 prep of,terminus
R4176 T6639 T6640 amod human,PAX6
R4177 T6640 T6638 pobj PAX6,of
R4178 T6641 T6628 auxpass were,aligned
R4179 T6642 T6628 advcl using,aligned
R4180 T6643 T6642 dobj CLUSTAL,using
R4181 T6644 T6645 punct [,24
R4182 T6645 T6628 parataxis 24,aligned
R4183 T6646 T6645 punct ],24
R4184 T6647 T6628 punct .,aligned
R4185 T6649 T6650 amod Secondary,structure
R4186 T6650 T6651 compound structure,prediction
R4187 T6651 T6652 nsubjpass prediction,performed
R4188 T6653 T6652 auxpass was,performed
R4189 T6654 T6652 advcl using,performed
R4190 T6655 T6656 det the,method
R4191 T6656 T6654 dobj method,using
R4192 T6657 T6656 compound JPRED,method
R4193 T6658 T6656 compound consensus,method
R4194 T6659 T6660 punct [,26
R4195 T6660 T6652 parataxis 26,performed
R4196 T6661 T6660 nummod 25,26
R4197 T6662 T6660 punct ",",26
R4198 T6663 T6660 punct ],26
R4199 T6664 T6652 punct .,performed

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6594 350-359 SO:0000993 denotes consensus
T6593 251-255 PR_EXT:000012318 denotes PAX6
T6592 245-250 NCBITaxon:9606 denotes human
T6591 231-241 CHEBI_SO_EXT:C_terminus_or_C_terminal_region denotes C-terminus
T6590 213-223 SO:0000857 denotes homologous
T6589 186-195 SO_EXT:biological_sequence denotes sequences
T6588 178-185 CHEBI_PR_EXT:protein denotes Protein
T6587 0-8 SO_EXT:biological_sequence denotes Sequence

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6586 350-359 SO:0000993 denotes consensus
T6585 251-255 PR:000012318 denotes PAX6
T6584 245-250 NCBITaxon:9606 denotes human
T6583 213-223 SO:0000857 denotes homologous