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PMC:1186732 / 6690-7514 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1518 0-5 DT denotes These
T1519 6-17 NNS denotes experiments
T1520 18-30 VBD denotes demonstrated
T1521 31-41 JJ denotes widespread
T1522 45-55 NN denotes regulation
T1523 42-44 JJ denotes up
T1524 44-45 HYPH denotes -
T1525 56-58 IN denotes of
T1526 59-63 NN denotes cone
T1527 64-72 JJ denotes specific
T1528 63-64 HYPH denotes -
T1529 91-96 NNS denotes genes
T1530 73-76 CC denotes and
T1531 77-81 NN denotes cone
T1532 82-90 VBN denotes enriched
T1533 81-82 HYPH denotes -
T1534 97-99 IN denotes in
T1535 100-103 DT denotes the
T1536 108-114 NN denotes retina
T1537 104-107 NN denotes rd7
T1538 114-116 , denotes ,
T1539 116-126 RB denotes especially
T1540 127-129 IN denotes by
T1541 130-139 JJ denotes postnatal
T1542 140-143 NN denotes day
T1543 144-146 CD denotes 14
T1544 147-148 -LRB- denotes (
T1545 148-151 NN denotes P14
T1546 151-152 -RRB- denotes )
T1547 153-156 CC denotes and
T1548 157-160 NN denotes P21
T1549 161-162 -LRB- denotes (
T1550 162-168 NN denotes Figure
T1551 169-170 CD denotes 1
T1552 170-171 -RRB- denotes )
T1553 171-172 . denotes .
T1554 172-290 sentence denotes Most known cone-specific or cone-enriched genes were found to be up-regulated in the mutant (Figure 1, genes G1–G15).
T1555 173-177 JJS denotes Most
T1556 215-220 NNS denotes genes
T1557 178-183 JJ denotes known
T1558 184-188 NN denotes cone
T1559 189-197 JJ denotes specific
T1560 188-189 HYPH denotes -
T1561 198-200 CC denotes or
T1562 201-205 NN denotes cone
T1563 206-214 VBN denotes enriched
T1564 205-206 HYPH denotes -
T1565 226-231 VBN denotes found
T1566 221-225 VBD denotes were
T1567 232-234 TO denotes to
T1568 241-250 VBN denotes regulated
T1569 235-237 VB denotes be
T1570 238-240 RB denotes up
T1571 240-241 HYPH denotes -
T1572 251-253 IN denotes in
T1573 254-257 DT denotes the
T1574 258-264 NN denotes mutant
T1575 265-266 -LRB- denotes (
T1576 266-272 NN denotes Figure
T1577 273-274 CD denotes 1
T1578 274-276 , denotes ,
T1579 276-281 NNS denotes genes
T1580 282-284 NN denotes G1
T1581 284-285 SYM denotes –
T1582 285-288 NN denotes G15
T1583 288-289 -RRB- denotes )
T1584 289-290 . denotes .
T1585 290-433 sentence denotes The majority of these genes represent components of the phototransduction cascade (e.g., opsins, transducins, and phosphodiesterase subunits).
T1586 291-294 DT denotes The
T1587 295-303 NN denotes majority
T1588 319-328 VBP denotes represent
T1589 304-306 IN denotes of
T1590 307-312 DT denotes these
T1591 313-318 NNS denotes genes
T1592 329-339 NNS denotes components
T1593 340-342 IN denotes of
T1594 343-346 DT denotes the
T1595 365-372 NN denotes cascade
T1596 347-364 NN denotes phototransduction
T1597 373-374 -LRB- denotes (
T1598 380-386 NNS denotes opsins
T1599 374-378 FW denotes e.g.
T1600 378-380 , denotes ,
T1601 386-388 , denotes ,
T1602 388-399 NNS denotes transducins
T1603 399-401 , denotes ,
T1604 401-404 CC denotes and
T1605 405-422 NN denotes phosphodiesterase
T1606 423-431 NNS denotes subunits
T1607 431-432 -RRB- denotes )
T1608 432-433 . denotes .
T1609 433-629 sentence denotes In addition to these genes, several novel cone-specific genes of unknown function recently identified in our lab were also up-regulated (Figure 1, genes G16, G17, G21, and G24; unpublished data).
T1610 434-436 IN denotes In
T1611 560-569 VBN denotes regulated
T1612 437-445 NN denotes addition
T1613 446-448 IN denotes to
T1614 449-454 DT denotes these
T1615 455-460 NNS denotes genes
T1616 460-462 , denotes ,
T1617 462-469 JJ denotes several
T1618 490-495 NNS denotes genes
T1619 470-475 JJ denotes novel
T1620 476-480 NN denotes cone
T1621 481-489 JJ denotes specific
T1622 480-481 HYPH denotes -
T1623 496-498 IN denotes of
T1624 499-506 JJ denotes unknown
T1625 507-515 NN denotes function
T1626 516-524 RB denotes recently
T1627 525-535 VBN denotes identified
T1628 536-538 IN denotes in
T1629 539-542 PRP$ denotes our
T1630 543-546 NN denotes lab
T1631 547-551 VBD denotes were
T1632 552-556 RB denotes also
T1633 557-559 RB denotes up
T1634 559-560 HYPH denotes -
T1635 570-571 -LRB- denotes (
T1636 623-627 NNS denotes data
T1637 571-577 NNP denotes Figure
T1638 578-579 CD denotes 1
T1639 579-581 , denotes ,
T1640 581-586 NNS denotes genes
T1641 587-590 NN denotes G16
T1642 590-592 , denotes ,
T1643 592-595 NN denotes G17
T1644 595-597 , denotes ,
T1645 597-600 NN denotes G21
T1646 600-602 , denotes ,
T1647 602-605 CC denotes and
T1648 606-609 NN denotes G24
T1649 609-610 : denotes ;
T1650 611-622 JJ denotes unpublished
T1651 627-628 -RRB- denotes )
T1652 628-629 . denotes .
T1653 629-824 sentence denotes Finally, a wide range of other genes, most with no previously recognized role in the retina, were found to be up-regulated in the rd7 mutant (Figure 1, G26–G53; Tables S1 and S2; Figures S1–S7).
T1654 630-637 RB denotes Finally
T1655 728-733 VBN denotes found
T1656 637-639 , denotes ,
T1657 639-640 DT denotes a
T1658 646-651 NN denotes range
T1659 641-645 JJ denotes wide
T1660 652-654 IN denotes of
T1661 655-660 JJ denotes other
T1662 661-666 NNS denotes genes
T1663 666-668 , denotes ,
T1664 668-672 DT denotes most
T1665 673-677 IN denotes with
T1666 678-680 DT denotes no
T1667 703-707 NN denotes role
T1668 681-691 RB denotes previously
T1669 692-702 VBN denotes recognized
T1670 708-710 IN denotes in
T1671 711-714 DT denotes the
T1672 715-721 NN denotes retina
T1673 721-723 , denotes ,
T1674 723-727 VBD denotes were
T1675 734-736 TO denotes to
T1676 743-752 VBN denotes regulated
T1677 737-739 VB denotes be
T1678 740-742 RB denotes up
T1679 742-743 HYPH denotes -
T1680 753-755 IN denotes in
T1681 756-759 DT denotes the
T1682 764-770 NN denotes mutant
T1683 760-763 NN denotes rd7
T1684 771-772 -LRB- denotes (
T1685 772-778 NN denotes Figure
T1686 779-780 CD denotes 1
T1687 780-782 , denotes ,
T1688 782-785 NN denotes G26
T1689 785-786 SYM denotes –
T1690 786-789 NN denotes G53
T1691 789-790 : denotes ;
T1692 791-797 NNS denotes Tables
T1693 798-800 NN denotes S1
T1694 801-804 CC denotes and
T1695 805-807 NN denotes S2
T1696 807-808 : denotes ;
T1697 809-816 NNS denotes Figures
T1698 817-819 NN denotes S1
T1699 819-820 SYM denotes –
T1700 820-822 NN denotes S7
T1701 822-823 -RRB- denotes )
T1702 823-824 . denotes .
R943 T1518 T1519 det These,experiments
R944 T1519 T1520 nsubj experiments,demonstrated
R945 T1521 T1522 amod widespread,regulation
R946 T1522 T1520 dobj regulation,demonstrated
R947 T1523 T1522 amod up,regulation
R948 T1524 T1522 punct -,regulation
R949 T1525 T1522 prep of,regulation
R950 T1526 T1527 npadvmod cone,specific
R951 T1527 T1529 amod specific,genes
R952 T1528 T1527 punct -,specific
R953 T1529 T1525 pobj genes,of
R954 T1530 T1527 cc and,specific
R955 T1531 T1532 npadvmod cone,enriched
R956 T1532 T1527 conj enriched,specific
R957 T1533 T1532 punct -,enriched
R958 T1534 T1522 prep in,regulation
R959 T1535 T1536 det the,retina
R960 T1536 T1534 pobj retina,in
R961 T1537 T1536 compound rd7,retina
R962 T1538 T1522 punct ", ",regulation
R963 T1539 T1540 advmod especially,by
R964 T1540 T1522 prep by,regulation
R965 T1541 T1542 amod postnatal,day
R966 T1542 T1540 pobj day,by
R967 T1543 T1542 nummod 14,day
R968 T1544 T1542 punct (,day
R969 T1545 T1542 appos P14,day
R970 T1546 T1542 punct ),day
R971 T1547 T1542 cc and,day
R972 T1548 T1542 conj P21,day
R973 T1549 T1550 punct (,Figure
R974 T1550 T1522 parataxis Figure,regulation
R975 T1551 T1550 nummod 1,Figure
R976 T1552 T1550 punct ),Figure
R977 T1553 T1520 punct .,demonstrated
R978 T1555 T1556 amod Most,genes
R979 T1556 T1565 nsubjpass genes,found
R980 T1557 T1556 amod known,genes
R981 T1558 T1559 npadvmod cone,specific
R982 T1559 T1556 amod specific,genes
R983 T1560 T1559 punct -,specific
R984 T1561 T1559 cc or,specific
R985 T1562 T1563 npadvmod cone,enriched
R986 T1563 T1559 conj enriched,specific
R987 T1564 T1563 punct -,enriched
R988 T1566 T1565 auxpass were,found
R989 T1567 T1568 aux to,regulated
R990 T1568 T1565 xcomp regulated,found
R991 T1569 T1568 auxpass be,regulated
R992 T1570 T1568 advmod up,regulated
R993 T1571 T1568 punct -,regulated
R994 T1572 T1568 prep in,regulated
R995 T1573 T1574 det the,mutant
R996 T1574 T1572 pobj mutant,in
R997 T1575 T1576 punct (,Figure
R998 T1576 T1565 parataxis Figure,found
R999 T1577 T1576 nummod 1,Figure
R1000 T1578 T1576 punct ", ",Figure
R1001 T1579 T1580 compound genes,G1
R1002 T1580 T1576 appos G1,Figure
R1003 T1581 T1582 punct –,G15
R1004 T1582 T1580 prep G15,G1
R1005 T1583 T1576 punct ),Figure
R1006 T1584 T1565 punct .,found
R1007 T1586 T1587 det The,majority
R1008 T1587 T1588 nsubj majority,represent
R1009 T1589 T1587 prep of,majority
R1010 T1590 T1591 det these,genes
R1011 T1591 T1589 pobj genes,of
R1012 T1592 T1588 dobj components,represent
R1013 T1593 T1592 prep of,components
R1014 T1594 T1595 det the,cascade
R1015 T1595 T1593 pobj cascade,of
R1016 T1596 T1595 compound phototransduction,cascade
R1017 T1597 T1598 punct (,opsins
R1018 T1598 T1595 parataxis opsins,cascade
R1019 T1599 T1598 advmod e.g.,opsins
R1020 T1600 T1598 punct ", ",opsins
R1021 T1601 T1598 punct ", ",opsins
R1022 T1602 T1598 conj transducins,opsins
R1023 T1603 T1602 punct ", ",transducins
R1024 T1604 T1602 cc and,transducins
R1025 T1605 T1606 compound phosphodiesterase,subunits
R1026 T1606 T1602 conj subunits,transducins
R1027 T1607 T1598 punct ),opsins
R1028 T1608 T1588 punct .,represent
R1029 T1610 T1611 prep In,regulated
R1030 T1612 T1610 pobj addition,In
R1031 T1613 T1612 prep to,addition
R1032 T1614 T1615 det these,genes
R1033 T1615 T1613 pobj genes,to
R1034 T1616 T1611 punct ", ",regulated
R1035 T1617 T1618 amod several,genes
R1036 T1618 T1611 nsubjpass genes,regulated
R1037 T1619 T1618 amod novel,genes
R1038 T1620 T1621 npadvmod cone,specific
R1039 T1621 T1618 amod specific,genes
R1040 T1622 T1621 punct -,specific
R1041 T1623 T1618 prep of,genes
R1042 T1624 T1625 amod unknown,function
R1043 T1625 T1623 pobj function,of
R1044 T1626 T1627 advmod recently,identified
R1045 T1627 T1618 acl identified,genes
R1046 T1628 T1627 prep in,identified
R1047 T1629 T1630 poss our,lab
R1048 T1630 T1628 pobj lab,in
R1049 T1631 T1611 auxpass were,regulated
R1050 T1632 T1611 advmod also,regulated
R1051 T1633 T1611 advmod up,regulated
R1052 T1634 T1611 punct -,regulated
R1053 T1635 T1636 punct (,data
R1054 T1636 T1611 parataxis data,regulated
R1055 T1637 T1636 dep Figure,data
R1056 T1638 T1637 nummod 1,Figure
R1057 T1639 T1637 punct ", ",Figure
R1058 T1640 T1641 compound genes,G16
R1059 T1641 T1637 appos G16,Figure
R1060 T1642 T1641 punct ", ",G16
R1061 T1643 T1641 conj G17,G16
R1062 T1644 T1643 punct ", ",G17
R1063 T1645 T1643 conj G21,G17
R1064 T1646 T1645 punct ", ",G21
R1065 T1647 T1645 cc and,G21
R1066 T1648 T1645 conj G24,G21
R1067 T1649 T1636 punct ;,data
R1068 T1650 T1636 amod unpublished,data
R1069 T1651 T1636 punct ),data
R1070 T1652 T1611 punct .,regulated
R1071 T1654 T1655 advmod Finally,found
R1072 T1656 T1655 punct ", ",found
R1073 T1657 T1658 det a,range
R1074 T1658 T1655 nsubjpass range,found
R1075 T1659 T1658 amod wide,range
R1076 T1660 T1658 prep of,range
R1077 T1661 T1662 amod other,genes
R1078 T1662 T1660 pobj genes,of
R1079 T1663 T1662 punct ", ",genes
R1080 T1664 T1665 nsubj most,with
R1081 T1665 T1662 relcl with,genes
R1082 T1666 T1667 det no,role
R1083 T1667 T1665 pobj role,with
R1084 T1668 T1669 advmod previously,recognized
R1085 T1669 T1667 amod recognized,role
R1086 T1670 T1667 prep in,role
R1087 T1671 T1672 det the,retina
R1088 T1672 T1670 pobj retina,in
R1089 T1673 T1655 punct ", ",found
R1090 T1674 T1655 auxpass were,found
R1091 T1675 T1676 aux to,regulated
R1092 T1676 T1655 xcomp regulated,found
R1093 T1677 T1676 auxpass be,regulated
R1094 T1678 T1676 advmod up,regulated
R1095 T1679 T1676 punct -,regulated
R1096 T1680 T1676 prep in,regulated
R1097 T1681 T1682 det the,mutant
R1098 T1682 T1680 pobj mutant,in
R1099 T1683 T1682 compound rd7,mutant
R1100 T1684 T1685 punct (,Figure
R1101 T1685 T1655 parataxis Figure,found
R1102 T1686 T1685 nummod 1,Figure
R1103 T1687 T1685 punct ", ",Figure
R1104 T1688 T1685 appos G26,Figure
R1105 T1689 T1690 punct –,G53
R1106 T1690 T1688 prep G53,G26
R1107 T1691 T1685 punct ;,Figure
R1108 T1692 T1693 compound Tables,S1
R1109 T1693 T1685 appos S1,Figure
R1110 T1694 T1693 cc and,S1
R1111 T1695 T1693 conj S2,S1
R1112 T1696 T1685 punct ;,Figure
R1113 T1697 T1698 compound Figures,S1
R1114 T1698 T1685 appos S1,Figure
R1115 T1699 T1700 punct –,S7
R1116 T1700 T1698 prep S7,S1
R1117 T1701 T1685 punct ),Figure
R1118 T1702 T1655 punct .,found

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1361 42-55 GO_EXT:positive_regulation denotes up-regulation
T1362 59-63 CL:0000573 denotes cone
T1363 77-81 CL:0000573 denotes cone
T1364 91-96 SO_EXT:0000704 denotes genes
T1365 108-114 UBERON:0000966 denotes retina
T1366 134-139 GO:0007567 denotes natal
T1367 184-188 CL:0000573 denotes cone
T1368 201-205 CL:0000573 denotes cone
T1369 215-220 SO_EXT:0000704 denotes genes
T1370 238-250 GO_EXT:positive_regulation denotes up-regulated
T1371 258-264 SO_EXT:sequence_altered_entity denotes mutant
T1372 276-281 SO_EXT:0000704 denotes genes
T1373 313-318 SO_EXT:0000704 denotes genes
T1374 347-372 GO:0007602 denotes phototransduction cascade
T1375 380-386 PR_EXT:000001119 denotes opsins
T1376 405-422 GO_EXT:0008081 denotes phosphodiesterase
T1377 455-460 SO_EXT:0000704 denotes genes
T1378 476-480 CL:0000573 denotes cone
T1379 490-495 SO_EXT:0000704 denotes genes
T1380 557-569 GO_EXT:positive_regulation denotes up-regulated
T1381 581-586 SO_EXT:0000704 denotes genes
T1382 661-666 SO_EXT:0000704 denotes genes
T1383 715-721 UBERON:0000966 denotes retina
T1384 740-752 GO_EXT:positive_regulation denotes up-regulated
T1385 764-770 SO_EXT:sequence_altered_entity denotes mutant

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1309 59-63 CL:0000573 denotes cone
T1310 77-81 CL:0000573 denotes cone
T1311 91-96 SO:0000704 denotes genes
T1312 108-114 UBERON:0000966 denotes retina
T1313 134-139 GO:0007567 denotes natal
T1314 184-188 CL:0000573 denotes cone
T1315 201-205 CL:0000573 denotes cone
T1316 215-220 SO:0000704 denotes genes
T1317 276-281 SO:0000704 denotes genes
T1318 313-318 SO:0000704 denotes genes
T1319 347-372 GO:0007602 denotes phototransduction cascade
T1320 380-386 PR:000001119 denotes opsins
T1321 455-460 SO:0000704 denotes genes
T1322 476-480 CL:0000573 denotes cone
T1323 490-495 SO:0000704 denotes genes
T1324 581-586 SO:0000704 denotes genes
T1325 661-666 SO:0000704 denotes genes
T1326 715-721 UBERON:0000966 denotes retina