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PMC:1186732 / 6477-6689 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1476 0-212 sentence denotes Experiments at all timepoints were carried out in triplicate, and stringent criteria were applied in deciding whether a given gene was up- or down-regulated in the mutant (see Materials and Methods for details).
T1477 1-12 NNS denotes Experiments
T1478 36-43 VBN denotes carried
T1479 13-15 IN denotes at
T1480 16-19 DT denotes all
T1481 20-30 NNS denotes timepoints
T1482 31-35 VBD denotes were
T1483 44-47 RP denotes out
T1484 48-50 IN denotes in
T1485 51-61 NN denotes triplicate
T1486 61-63 , denotes ,
T1487 63-66 CC denotes and
T1488 67-76 JJ denotes stringent
T1489 77-85 NNS denotes criteria
T1490 91-98 VBN denotes applied
T1491 86-90 VBD denotes were
T1492 99-101 IN denotes in
T1493 102-110 VBG denotes deciding
T1494 111-118 IN denotes whether
T1495 148-157 VBN denotes regulated
T1496 119-120 DT denotes a
T1497 127-131 NN denotes gene
T1498 121-126 VBN denotes given
T1499 132-135 VBD denotes was
T1500 136-138 RB denotes up
T1501 138-139 HYPH denotes -
T1502 140-142 CC denotes or
T1503 143-147 RB denotes down
T1504 147-148 HYPH denotes -
T1505 158-160 IN denotes in
T1506 161-164 DT denotes the
T1507 165-171 NN denotes mutant
T1508 172-173 -LRB- denotes (
T1509 173-176 VB denotes see
T1510 177-186 NNS denotes Materials
T1511 187-190 CC denotes and
T1512 191-198 NNS denotes Methods
T1513 199-202 IN denotes for
T1514 203-210 NNS denotes details
T1515 210-211 -RRB- denotes )
T1516 211-212 . denotes .
R904 T1477 T1478 nsubjpass Experiments,carried
R905 T1479 T1477 prep at,Experiments
R906 T1480 T1481 det all,timepoints
R907 T1481 T1479 pobj timepoints,at
R908 T1482 T1478 auxpass were,carried
R909 T1483 T1478 prt out,carried
R910 T1484 T1478 prep in,carried
R911 T1485 T1484 pobj triplicate,in
R912 T1486 T1478 punct ", ",carried
R913 T1487 T1478 cc and,carried
R914 T1488 T1489 amod stringent,criteria
R915 T1489 T1490 nsubjpass criteria,applied
R916 T1490 T1478 conj applied,carried
R917 T1491 T1490 auxpass were,applied
R918 T1492 T1490 prep in,applied
R919 T1493 T1492 pcomp deciding,in
R920 T1494 T1495 mark whether,regulated
R921 T1495 T1493 ccomp regulated,deciding
R922 T1496 T1497 det a,gene
R923 T1497 T1495 nsubjpass gene,regulated
R924 T1498 T1497 amod given,gene
R925 T1499 T1495 auxpass was,regulated
R926 T1500 T1495 advmod up,regulated
R927 T1501 T1500 punct -,up
R928 T1502 T1500 cc or,up
R929 T1503 T1500 conj down,up
R930 T1504 T1495 punct -,regulated
R931 T1505 T1495 prep in,regulated
R932 T1506 T1507 det the,mutant
R933 T1507 T1505 pobj mutant,in
R934 T1508 T1509 punct (,see
R935 T1509 T1490 parataxis see,applied
R936 T1510 T1509 dobj Materials,see
R937 T1511 T1510 cc and,Materials
R938 T1512 T1510 conj Methods,Materials
R939 T1513 T1509 prep for,see
R940 T1514 T1513 pobj details,for
R941 T1515 T1509 punct ),see
R942 T1516 T1490 punct .,applied

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1356 127-131 SO_EXT:0000704 denotes gene
T1357 136-139 _FRAGMENT denotes up-
T1358 148-157 GO_EXT:positive_regulation denotes regulated
T1359 143-157 GO_EXT:negative_regulation denotes down-regulated
T1360 165-171 SO_EXT:sequence_altered_entity denotes mutant
R833 T1358 T1357 _lexicallyChainedTo regulated,up-

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1308 127-131 SO:0000704 denotes gene