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PMC:1186732 / 58103-59012 JSONTXT

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Id Subject Object Predicate Lexical cue
T13527 0-4 DT denotes This
T13528 5-13 NN denotes protocol
T13529 18-25 VBN denotes adapted
T13530 14-17 VBD denotes was
T13531 26-30 IN denotes from
T13532 31-34 CD denotes one
T13533 35-39 VBN denotes used
T13534 40-42 IN denotes by
T13535 43-50 NNP denotes Raviola
T13536 51-52 -LRB- denotes [
T13537 52-54 CD denotes 64
T13538 54-55 -RRB- denotes ]
T13539 56-60 IN denotes with
T13540 61-65 DT denotes some
T13541 66-79 NNS denotes modifications
T13542 80-87 VBN denotes derived
T13543 88-92 IN denotes from
T13544 93-99 NNP denotes Carter
T13545 100-106 NNP denotes Dawson
T13546 99-100 HYPH denotes -
T13547 107-110 CC denotes and
T13548 111-117 NNP denotes Lavail
T13549 118-119 -LRB- denotes [
T13550 119-121 CD denotes 26
T13551 121-122 -RRB- denotes ]
T13552 122-123 . denotes .
T13553 123-265 sentence denotes Four adult wild-type and four mutant animals were deeply anesthetized by intraperitoneal injection of Avertin and the eyes were then removed.
T13554 124-128 CD denotes Four
T13555 140-144 NN denotes type
T13556 129-134 JJ denotes adult
T13557 135-139 JJ denotes wild
T13558 139-140 HYPH denotes -
T13559 161-168 NNS denotes animals
T13560 145-148 CC denotes and
T13561 149-153 CD denotes four
T13562 154-160 NN denotes mutant
T13563 181-193 VBN denotes anesthetized
T13564 169-173 VBD denotes were
T13565 174-180 RB denotes deeply
T13566 194-196 IN denotes by
T13567 197-212 JJ denotes intraperitoneal
T13568 213-222 NN denotes injection
T13569 223-225 IN denotes of
T13570 226-233 NNP denotes Avertin
T13571 234-237 CC denotes and
T13572 238-241 DT denotes the
T13573 242-246 NNS denotes eyes
T13574 257-264 VBN denotes removed
T13575 247-251 VBD denotes were
T13576 252-256 RB denotes then
T13577 264-265 . denotes .
T13578 265-354 sentence denotes The cornea was gently punctured with sharp forceps and excised with iridectomy scissors.
T13579 266-269 DT denotes The
T13580 270-276 NN denotes cornea
T13581 288-297 VBN denotes punctured
T13582 277-280 VBD denotes was
T13583 281-287 RB denotes gently
T13584 298-302 IN denotes with
T13585 303-308 JJ denotes sharp
T13586 309-316 NN denotes forceps
T13587 317-320 CC denotes and
T13588 321-328 VBN denotes excised
T13589 329-333 IN denotes with
T13590 334-344 NN denotes iridectomy
T13591 345-353 NNS denotes scissors
T13592 353-354 . denotes .
T13593 354-506 sentence denotes The eye was then transferred to a solution of 2% paraformaldehyde/2% glutaraldehyde in cacodylate buffer (0.1 M cacodylic acid; 0.1% calcium chloride).
T13594 355-358 DT denotes The
T13595 359-362 NN denotes eye
T13596 372-383 VBN denotes transferred
T13597 363-366 VBD denotes was
T13598 367-371 RB denotes then
T13599 384-386 IN denotes to
T13600 387-388 DT denotes a
T13601 389-397 NN denotes solution
T13602 398-400 IN denotes of
T13603 401-402 CD denotes 2
T13604 402-403 NN denotes %
T13605 404-420 NN denotes paraformaldehyde
T13606 420-421 HYPH denotes /
T13607 421-422 CD denotes 2
T13608 422-423 NN denotes %
T13609 424-438 NN denotes glutaraldehyde
T13610 439-441 IN denotes in
T13611 442-452 NN denotes cacodylate
T13612 453-459 NN denotes buffer
T13613 460-461 -LRB- denotes (
T13614 477-481 NN denotes acid
T13615 461-464 CD denotes 0.1
T13616 465-466 NN denotes M
T13617 467-476 JJ denotes cacodylic
T13618 481-482 : denotes ;
T13619 483-486 CD denotes 0.1
T13620 486-487 NN denotes %
T13621 496-504 NN denotes chloride
T13622 488-495 NN denotes calcium
T13623 504-505 -RRB- denotes )
T13624 505-506 . denotes .
T13625 506-593 sentence denotes The lens was gently removed and the eyecup allowed to fix for 2 h at room temperature.
T13626 507-510 DT denotes The
T13627 511-515 NN denotes lens
T13628 527-534 VBN denotes removed
T13629 516-519 VBD denotes was
T13630 520-526 RB denotes gently
T13631 535-538 CC denotes and
T13632 539-542 DT denotes the
T13633 543-549 NN denotes eyecup
T13634 550-557 VBD denotes allowed
T13635 558-560 TO denotes to
T13636 561-564 VB denotes fix
T13637 565-568 IN denotes for
T13638 569-570 CD denotes 2
T13639 571-572 NN denotes h
T13640 573-575 IN denotes at
T13641 576-580 NN denotes room
T13642 581-592 NN denotes temperature
T13643 592-593 . denotes .
T13644 593-787 sentence denotes The fixed eye was then placed on dental wax and sectioned in the midline with a fresh razor blade (half of the retinas were sectioned along the D-V axis and half along the nasal-temporal axis).
T13645 594-597 DT denotes The
T13646 604-607 NN denotes eye
T13647 598-603 VBN denotes fixed
T13648 617-623 VBN denotes placed
T13649 608-611 VBD denotes was
T13650 612-616 RB denotes then
T13651 624-626 IN denotes on
T13652 627-633 JJ denotes dental
T13653 634-637 NN denotes wax
T13654 638-641 CC denotes and
T13655 642-651 VBN denotes sectioned
T13656 652-654 IN denotes in
T13657 655-658 DT denotes the
T13658 659-666 NN denotes midline
T13659 667-671 IN denotes with
T13660 672-673 DT denotes a
T13661 686-691 NN denotes blade
T13662 674-679 JJ denotes fresh
T13663 680-685 NN denotes razor
T13664 692-693 -LRB- denotes (
T13665 718-727 VBN denotes sectioned
T13666 693-697 NN denotes half
T13667 698-700 IN denotes of
T13668 701-704 DT denotes the
T13669 705-712 NNS denotes retinas
T13670 713-717 VBD denotes were
T13671 728-733 IN denotes along
T13672 734-737 DT denotes the
T13673 742-746 NN denotes axis
T13674 738-739 NN denotes D
T13675 740-741 NN denotes V
T13676 739-740 HYPH denotes -
T13677 747-750 CC denotes and
T13678 751-755 NN denotes half
T13679 756-761 IN denotes along
T13680 762-765 DT denotes the
T13681 781-785 NN denotes axis
T13682 766-771 JJ denotes nasal
T13683 772-780 JJ denotes temporal
T13684 771-772 HYPH denotes -
T13685 785-786 -RRB- denotes )
T13686 786-787 . denotes .
T13687 787-909 sentence denotes The retinas (and attached retinal pigment epithelium) were carefully dissected away from the sclera, which was discarded.
T13688 788-791 DT denotes The
T13689 792-799 NNS denotes retinas
T13690 857-866 VBN denotes dissected
T13691 800-801 -LRB- denotes (
T13692 801-804 CC denotes and
T13693 805-813 VBN denotes attached
T13694 830-840 NN denotes epithelium
T13695 814-821 JJ denotes retinal
T13696 822-829 NN denotes pigment
T13697 840-841 -RRB- denotes )
T13698 842-846 VBD denotes were
T13699 847-856 RB denotes carefully
T13700 867-871 RB denotes away
T13701 872-876 IN denotes from
T13702 877-880 DT denotes the
T13703 881-887 NN denotes sclera
T13704 887-889 , denotes ,
T13705 889-894 WDT denotes which
T13706 899-908 VBN denotes discarded
T13707 895-898 VBD denotes was
T13708 908-909 . denotes .
R8929 T13527 T13528 det This,protocol
R8930 T13528 T13529 nsubjpass protocol,adapted
R8931 T13530 T13529 auxpass was,adapted
R8932 T13531 T13529 prep from,adapted
R8933 T13532 T13531 pobj one,from
R8934 T13533 T13532 acl used,one
R8935 T13534 T13533 agent by,used
R8936 T13535 T13534 pobj Raviola,by
R8937 T13536 T13537 punct [,64
R8938 T13537 T13533 parataxis 64,used
R8939 T13538 T13537 punct ],64
R8940 T13539 T13529 prep with,adapted
R8941 T13540 T13541 det some,modifications
R8942 T13541 T13539 pobj modifications,with
R8943 T13542 T13541 acl derived,modifications
R8944 T13543 T13542 prep from,derived
R8945 T13544 T13545 compound Carter,Dawson
R8946 T13545 T13543 pobj Dawson,from
R8947 T13546 T13545 punct -,Dawson
R8948 T13547 T13545 cc and,Dawson
R8949 T13548 T13545 conj Lavail,Dawson
R8950 T13549 T13550 punct [,26
R8951 T13550 T13529 parataxis 26,adapted
R8952 T13551 T13550 punct ],26
R8953 T13552 T13529 punct .,adapted
R8954 T13554 T13555 nummod Four,type
R8955 T13555 T13559 nmod type,animals
R8956 T13556 T13555 amod adult,type
R8957 T13557 T13555 amod wild,type
R8958 T13558 T13555 punct -,type
R8959 T13559 T13563 nsubjpass animals,anesthetized
R8960 T13560 T13555 cc and,type
R8961 T13561 T13562 nummod four,mutant
R8962 T13562 T13555 conj mutant,type
R8963 T13564 T13563 auxpass were,anesthetized
R8964 T13565 T13563 advmod deeply,anesthetized
R8965 T13566 T13563 prep by,anesthetized
R8966 T13567 T13568 amod intraperitoneal,injection
R8967 T13568 T13566 pobj injection,by
R8968 T13569 T13568 prep of,injection
R8969 T13570 T13569 pobj Avertin,of
R8970 T13571 T13563 cc and,anesthetized
R8971 T13572 T13573 det the,eyes
R8972 T13573 T13574 nsubjpass eyes,removed
R8973 T13574 T13563 conj removed,anesthetized
R8974 T13575 T13574 auxpass were,removed
R8975 T13576 T13574 advmod then,removed
R8976 T13577 T13574 punct .,removed
R8977 T13579 T13580 det The,cornea
R8978 T13580 T13581 nsubjpass cornea,punctured
R8979 T13582 T13581 auxpass was,punctured
R8980 T13583 T13581 advmod gently,punctured
R8981 T13584 T13581 prep with,punctured
R8982 T13585 T13586 amod sharp,forceps
R8983 T13586 T13584 pobj forceps,with
R8984 T13587 T13581 cc and,punctured
R8985 T13588 T13581 conj excised,punctured
R8986 T13589 T13588 prep with,excised
R8987 T13590 T13591 compound iridectomy,scissors
R8988 T13591 T13589 pobj scissors,with
R8989 T13592 T13581 punct .,punctured
R8990 T13594 T13595 det The,eye
R8991 T13595 T13596 nsubjpass eye,transferred
R8992 T13597 T13596 auxpass was,transferred
R8993 T13598 T13596 advmod then,transferred
R8994 T13599 T13596 prep to,transferred
R8995 T13600 T13601 det a,solution
R8996 T13601 T13599 pobj solution,to
R8997 T13602 T13601 prep of,solution
R8998 T13603 T13604 nummod 2,%
R8999 T13604 T13605 compound %,paraformaldehyde
R9000 T13605 T13602 pobj paraformaldehyde,of
R9001 T13606 T13605 punct /,paraformaldehyde
R9002 T13607 T13608 nummod 2,%
R9003 T13608 T13609 compound %,glutaraldehyde
R9004 T13609 T13605 appos glutaraldehyde,paraformaldehyde
R9005 T13610 T13605 prep in,paraformaldehyde
R9006 T13611 T13612 compound cacodylate,buffer
R9007 T13612 T13610 pobj buffer,in
R9008 T13613 T13614 punct (,acid
R9009 T13614 T13605 parataxis acid,paraformaldehyde
R9010 T13615 T13616 nummod 0.1,M
R9011 T13616 T13614 nmod M,acid
R9012 T13617 T13614 amod cacodylic,acid
R9013 T13618 T13614 punct ;,acid
R9014 T13619 T13620 nummod 0.1,%
R9015 T13620 T13621 compound %,chloride
R9016 T13621 T13614 appos chloride,acid
R9017 T13622 T13621 compound calcium,chloride
R9018 T13623 T13614 punct ),acid
R9019 T13624 T13596 punct .,transferred
R9020 T13626 T13627 det The,lens
R9021 T13627 T13628 nsubjpass lens,removed
R9022 T13629 T13628 auxpass was,removed
R9023 T13630 T13628 advmod gently,removed
R9024 T13631 T13628 cc and,removed
R9025 T13632 T13633 det the,eyecup
R9026 T13633 T13634 nsubj eyecup,allowed
R9027 T13634 T13628 conj allowed,removed
R9028 T13635 T13636 aux to,fix
R9029 T13636 T13634 xcomp fix,allowed
R9030 T13637 T13636 prep for,fix
R9031 T13638 T13639 nummod 2,h
R9032 T13639 T13637 pobj h,for
R9033 T13640 T13636 prep at,fix
R9034 T13641 T13642 compound room,temperature
R9035 T13642 T13640 pobj temperature,at
R9036 T13643 T13634 punct .,allowed
R9037 T13645 T13646 det The,eye
R9038 T13646 T13648 nsubjpass eye,placed
R9039 T13647 T13646 amod fixed,eye
R9040 T13649 T13648 auxpass was,placed
R9041 T13650 T13648 advmod then,placed
R9042 T13651 T13648 prep on,placed
R9043 T13652 T13653 amod dental,wax
R9044 T13653 T13651 pobj wax,on
R9045 T13654 T13648 cc and,placed
R9046 T13655 T13648 conj sectioned,placed
R9047 T13656 T13655 prep in,sectioned
R9048 T13657 T13658 det the,midline
R9049 T13658 T13656 pobj midline,in
R9050 T13659 T13655 prep with,sectioned
R9051 T13660 T13661 det a,blade
R9052 T13661 T13659 pobj blade,with
R9053 T13662 T13661 amod fresh,blade
R9054 T13663 T13661 compound razor,blade
R9055 T13664 T13665 punct (,sectioned
R9056 T13665 T13655 parataxis sectioned,sectioned
R9057 T13666 T13665 nsubjpass half,sectioned
R9058 T13667 T13666 prep of,half
R9059 T13668 T13669 det the,retinas
R9060 T13669 T13667 pobj retinas,of
R9061 T13670 T13665 auxpass were,sectioned
R9062 T13671 T13665 prep along,sectioned
R9063 T13672 T13673 det the,axis
R9064 T13673 T13671 pobj axis,along
R9065 T13674 T13675 compound D,V
R9066 T13675 T13673 compound V,axis
R9067 T13676 T13675 punct -,V
R9068 T13677 T13665 cc and,sectioned
R9069 T13678 T13665 conj half,sectioned
R9070 T13679 T13678 prep along,half
R9071 T13680 T13681 det the,axis
R9072 T13681 T13679 pobj axis,along
R9073 T13682 T13683 amod nasal,temporal
R9074 T13683 T13681 amod temporal,axis
R9075 T13684 T13683 punct -,temporal
R9076 T13685 T13665 punct ),sectioned
R9077 T13686 T13648 punct .,placed
R9078 T13688 T13689 det The,retinas
R9079 T13689 T13690 nsubjpass retinas,dissected
R9080 T13691 T13689 punct (,retinas
R9081 T13692 T13689 cc and,retinas
R9082 T13693 T13694 amod attached,epithelium
R9083 T13694 T13689 conj epithelium,retinas
R9084 T13695 T13694 amod retinal,epithelium
R9085 T13696 T13694 compound pigment,epithelium
R9086 T13697 T13690 punct ),dissected
R9087 T13698 T13690 auxpass were,dissected
R9088 T13699 T13690 advmod carefully,dissected
R9089 T13700 T13690 advmod away,dissected
R9090 T13701 T13700 prep from,away
R9091 T13702 T13703 det the,sclera
R9092 T13703 T13701 pobj sclera,from
R9093 T13704 T13703 punct ", ",sclera
R9094 T13705 T13706 dep which,discarded
R9095 T13706 T13703 relcl discarded,sclera
R9096 T13707 T13706 auxpass was,discarded
R9097 T13708 T13690 punct .,dissected

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13421 135-144 SO_EXT:wild_type_entity_or_quality denotes wild-type
T13422 154-160 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T13423 161-168 NCBITaxon:33208 denotes animals
T13424 181-193 CHEBI_EXT:anaesthetic_process denotes anesthetized
T13425 202-212 UBERON:0001179 denotes peritoneal
T13426 242-246 UBERON:0000970 denotes eyes
T13427 270-276 UBERON:0000964 denotes cornea
T13428 359-362 UBERON:0000970 denotes eye
T13429 372-383 GO_EXT:biological_movement_or_translocation_process denotes transferred
T13430 389-397 CHEBI:75958 denotes solution
T13431 404-420 CHEBI_EXT:paraformaldehye denotes paraformaldehyde
T13432 424-438 CHEBI:64276 denotes glutaraldehyde
T13433 442-452 CHEBI:16223 denotes cacodylate
T13434 453-459 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T13435 467-481 CHEBI:48765 denotes cacodylic acid
T13436 488-504 CHEBI:3312 denotes calcium chloride
T13437 511-515 UBERON_EXT:lens denotes lens
T13438 543-549 UBERON:0003072 denotes eyecup
T13439 604-607 UBERON:0000970 denotes eye
T13440 627-633 UBERON:0001091 denotes dental
T13441 634-637 CHEBI:73702 denotes wax
T13442 705-712 UBERON:0000966 denotes retinas
T13443 766-771 UBERON:0000004 denotes nasal
T13444 792-799 UBERON:0000966 denotes retinas
T13445 814-840 UBERON:0001782 denotes retinal pigment epithelium
T13446 822-829 CHEBI_EXT:26130 denotes pigment
T13447 881-887 UBERON:0001773 denotes sclera

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T13357 161-168 NCBITaxon:33208 denotes animals
T13358 202-212 UBERON:0001179 denotes peritoneal
T13359 242-246 UBERON:0000970 denotes eyes
T13360 270-276 UBERON:0000964 denotes cornea
T13361 359-362 UBERON:0000970 denotes eye
T13362 389-397 CHEBI:75958 denotes solution
T13363 424-438 CHEBI:64276 denotes glutaraldehyde
T13364 442-452 CHEBI:16223 denotes cacodylate
T13365 467-481 CHEBI:48765 denotes cacodylic acid
T13366 488-504 CHEBI:3312 denotes calcium chloride
T13367 543-549 UBERON:0003072 denotes eyecup
T13368 604-607 UBERON:0000970 denotes eye
T13369 627-633 UBERON:0001091 denotes dental
T13370 634-637 CHEBI:73702 denotes wax
T13371 705-712 UBERON:0000966 denotes retinas
T13372 766-771 UBERON:0000004 denotes nasal
T13373 792-799 UBERON:0000966 denotes retinas
T13374 814-840 UBERON:0001782 denotes retinal pigment epithelium
T13375 822-829 CHEBI:26130 denotes pigment
T13376 881-887 UBERON:0001773 denotes sclera

2_test

Id Subject Object Predicate Lexical cue
16110338-15676071-85798578 52-54 15676071 denotes 64
16110338-500858-85798579 119-121 500858 denotes 26
T90420 52-54 15676071 denotes 64
T88610 119-121 500858 denotes 26