> top > docs > PMC:1186732 > spans > 25198-25946 > annotations

PMC:1186732 / 25198-25946 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T5313 0-8 NN denotes Analysis
T5314 74-83 VBD denotes indicated
T5315 9-11 IN denotes of
T5316 12-19 JJ denotes several
T5317 48-55 NNS denotes factors
T5318 20-33 NN denotes photoreceptor
T5319 34-47 NN denotes transcription
T5320 56-58 IN denotes in
T5321 59-62 DT denotes the
T5322 67-73 NN denotes mutant
T5323 63-66 NN denotes rd7
T5324 84-88 IN denotes that
T5325 115-118 VBP denotes are
T5326 89-92 DT denotes the
T5327 93-99 NNS denotes levels
T5328 100-102 IN denotes of
T5329 103-106 NN denotes Crx
T5330 107-110 CC denotes and
T5331 111-114 NN denotes Nrl
T5332 119-129 JJ denotes unaffected
T5333 130-132 IN denotes in
T5334 133-136 DT denotes the
T5335 137-143 NN denotes mutant
T5336 144-146 IN denotes at
T5337 147-150 NN denotes P14
T5338 151-152 -LRB- denotes (
T5339 152-155 VB denotes see
T5340 156-162 NN denotes Figure
T5341 163-164 CD denotes 2
T5342 164-166 , denotes ,
T5343 166-171 JJR denotes lower
T5344 178-194 NNS denotes photomicrographs
T5345 172-177 JJ denotes right
T5346 194-195 -RRB- denotes )
T5347 195-196 . denotes .
T5348 196-377 sentence denotes Nrl is a rod-specific, basic leucine zipper transcription factor required for the activation of many rod-specific genes and the repression of most cone-specific genes in rods [24].
T5349 197-200 NN denotes Nrl
T5350 201-203 VBZ denotes is
T5351 204-205 DT denotes a
T5352 255-261 NN denotes factor
T5353 206-209 NN denotes rod
T5354 210-218 JJ denotes specific
T5355 209-210 HYPH denotes -
T5356 218-220 , denotes ,
T5357 220-225 JJ denotes basic
T5358 226-233 NN denotes leucine
T5359 234-240 NN denotes zipper
T5360 241-254 NN denotes transcription
T5361 262-270 VBN denotes required
T5362 271-274 IN denotes for
T5363 275-278 DT denotes the
T5364 279-289 NN denotes activation
T5365 290-292 IN denotes of
T5366 293-297 JJ denotes many
T5367 311-316 NNS denotes genes
T5368 298-301 NN denotes rod
T5369 302-310 JJ denotes specific
T5370 301-302 HYPH denotes -
T5371 317-320 CC denotes and
T5372 321-324 DT denotes the
T5373 325-335 NN denotes repression
T5374 336-338 IN denotes of
T5375 339-343 JJS denotes most
T5376 358-363 NNS denotes genes
T5377 344-348 NN denotes cone
T5378 349-357 JJ denotes specific
T5379 348-349 HYPH denotes -
T5380 364-366 IN denotes in
T5381 367-371 NNS denotes rods
T5382 372-373 -LRB- denotes [
T5383 373-375 CD denotes 24
T5384 375-376 -RRB- denotes ]
T5385 376-377 . denotes .
T5386 377-467 sentence denotes Nrl is known to be genetically upstream of Nr2e3 and is required for its expression [24].
T5387 378-381 NN denotes Nrl
T5388 385-390 VBN denotes known
T5389 382-384 VBZ denotes is
T5390 391-393 TO denotes to
T5391 394-396 VB denotes be
T5392 397-408 RB denotes genetically
T5393 409-417 RB denotes upstream
T5394 418-420 IN denotes of
T5395 421-426 NN denotes Nr2e3
T5396 427-430 CC denotes and
T5397 431-433 VBZ denotes is
T5398 434-442 VBN denotes required
T5399 443-446 IN denotes for
T5400 447-450 PRP$ denotes its
T5401 451-461 NN denotes expression
T5402 462-463 -LRB- denotes [
T5403 463-465 CD denotes 24
T5404 465-466 -RRB- denotes ]
T5405 466-467 . denotes .
T5406 467-625 sentence denotes Crx is a homeobox transcription factor expressed in both rods and cones and is required for the expression of a variety of rod- and cone-specific genes [25].
T5407 468-471 NN denotes Crx
T5408 472-474 VBZ denotes is
T5409 475-476 DT denotes a
T5410 500-506 NN denotes factor
T5411 477-485 NN denotes homeobox
T5412 486-499 NN denotes transcription
T5413 507-516 VBN denotes expressed
T5414 517-519 IN denotes in
T5415 520-524 CC denotes both
T5416 525-529 NNS denotes rods
T5417 530-533 CC denotes and
T5418 534-539 NNS denotes cones
T5419 540-543 CC denotes and
T5420 544-546 VBZ denotes is
T5421 547-555 VBN denotes required
T5422 556-559 IN denotes for
T5423 560-563 DT denotes the
T5424 564-574 NN denotes expression
T5425 575-577 IN denotes of
T5426 578-579 DT denotes a
T5427 580-587 NN denotes variety
T5428 588-590 IN denotes of
T5429 591-594 NN denotes rod
T5430 605-613 JJ denotes specific
T5431 594-595 HYPH denotes -
T5432 596-599 CC denotes and
T5433 600-604 NN denotes cone
T5434 604-605 HYPH denotes -
T5435 614-619 NNS denotes genes
T5436 620-621 -LRB- denotes [
T5437 621-623 CD denotes 25
T5438 623-624 -RRB- denotes ]
T5439 624-625 . denotes .
T5440 625-748 sentence denotes In contrast to what is seen in the Nrl mutant, Nr2e3 expression is unchanged in Crx mutant homozygotes (unpublished data).
T5441 626-628 IN denotes In
T5442 690-692 VBZ denotes is
T5443 629-637 NN denotes contrast
T5444 638-640 IN denotes to
T5445 641-645 WP denotes what
T5446 649-653 VBN denotes seen
T5447 646-648 VBZ denotes is
T5448 654-656 IN denotes in
T5449 657-660 DT denotes the
T5450 665-671 NN denotes mutant
T5451 661-664 NN denotes Nrl
T5452 671-673 , denotes ,
T5453 673-678 NN denotes Nr2e3
T5454 679-689 NN denotes expression
T5455 693-702 JJ denotes unchanged
T5456 703-705 IN denotes in
T5457 706-709 NN denotes Crx
T5458 717-728 NNS denotes homozygotes
T5459 710-716 NN denotes mutant
T5460 729-730 -LRB- denotes (
T5461 742-746 NNS denotes data
T5462 730-741 JJ denotes unpublished
T5463 746-747 -RRB- denotes )
T5464 747-748 . denotes .
R3346 T5313 T5314 nsubj Analysis,indicated
R3347 T5315 T5313 prep of,Analysis
R3348 T5316 T5317 amod several,factors
R3349 T5317 T5315 pobj factors,of
R3350 T5318 T5317 compound photoreceptor,factors
R3351 T5319 T5317 compound transcription,factors
R3352 T5320 T5313 prep in,Analysis
R3353 T5321 T5322 det the,mutant
R3354 T5322 T5320 pobj mutant,in
R3355 T5323 T5322 compound rd7,mutant
R3356 T5324 T5325 mark that,are
R3357 T5325 T5314 ccomp are,indicated
R3358 T5326 T5327 det the,levels
R3359 T5327 T5325 nsubj levels,are
R3360 T5328 T5327 prep of,levels
R3361 T5329 T5328 pobj Crx,of
R3362 T5330 T5329 cc and,Crx
R3363 T5331 T5329 conj Nrl,Crx
R3364 T5332 T5325 acomp unaffected,are
R3365 T5333 T5325 prep in,are
R3366 T5334 T5335 det the,mutant
R3367 T5335 T5333 pobj mutant,in
R3368 T5336 T5325 prep at,are
R3369 T5337 T5336 pobj P14,at
R3370 T5338 T5339 punct (,see
R3371 T5339 T5314 parataxis see,indicated
R3372 T5340 T5339 dobj Figure,see
R3373 T5341 T5340 nummod 2,Figure
R3374 T5342 T5340 punct ", ",Figure
R3375 T5343 T5344 amod lower,photomicrographs
R3376 T5344 T5340 appos photomicrographs,Figure
R3377 T5345 T5344 amod right,photomicrographs
R3378 T5346 T5339 punct ),see
R3379 T5347 T5314 punct .,indicated
R3380 T5349 T5350 nsubj Nrl,is
R3381 T5351 T5352 det a,factor
R3382 T5352 T5350 attr factor,is
R3383 T5353 T5354 npadvmod rod,specific
R3384 T5354 T5352 amod specific,factor
R3385 T5355 T5354 punct -,specific
R3386 T5356 T5352 punct ", ",factor
R3387 T5357 T5352 amod basic,factor
R3388 T5358 T5359 compound leucine,zipper
R3389 T5359 T5352 compound zipper,factor
R3390 T5360 T5352 compound transcription,factor
R3391 T5361 T5352 acl required,factor
R3392 T5362 T5361 prep for,required
R3393 T5363 T5364 det the,activation
R3394 T5364 T5362 pobj activation,for
R3395 T5365 T5364 prep of,activation
R3396 T5366 T5367 amod many,genes
R3397 T5367 T5365 pobj genes,of
R3398 T5368 T5369 npadvmod rod,specific
R3399 T5369 T5367 amod specific,genes
R3400 T5370 T5369 punct -,specific
R3401 T5371 T5364 cc and,activation
R3402 T5372 T5373 det the,repression
R3403 T5373 T5364 conj repression,activation
R3404 T5374 T5373 prep of,repression
R3405 T5375 T5376 amod most,genes
R3406 T5376 T5374 pobj genes,of
R3407 T5377 T5378 npadvmod cone,specific
R3408 T5378 T5376 amod specific,genes
R3409 T5379 T5378 punct -,specific
R3410 T5380 T5376 prep in,genes
R3411 T5381 T5380 pobj rods,in
R3412 T5382 T5383 punct [,24
R3413 T5383 T5350 parataxis 24,is
R3414 T5384 T5383 punct ],24
R3415 T5385 T5350 punct .,is
R3416 T5387 T5388 nsubjpass Nrl,known
R3417 T5389 T5388 auxpass is,known
R3418 T5390 T5391 aux to,be
R3419 T5391 T5388 xcomp be,known
R3420 T5392 T5393 advmod genetically,upstream
R3421 T5393 T5391 advmod upstream,be
R3422 T5394 T5393 prep of,upstream
R3423 T5395 T5394 pobj Nr2e3,of
R3424 T5396 T5388 cc and,known
R3425 T5397 T5398 auxpass is,required
R3426 T5398 T5388 conj required,known
R3427 T5399 T5398 prep for,required
R3428 T5400 T5401 poss its,expression
R3429 T5401 T5399 pobj expression,for
R3430 T5402 T5403 punct [,24
R3431 T5403 T5398 parataxis 24,required
R3432 T5404 T5403 punct ],24
R3433 T5405 T5388 punct .,known
R3434 T5407 T5408 nsubj Crx,is
R3435 T5409 T5410 det a,factor
R3436 T5410 T5408 attr factor,is
R3437 T5411 T5410 compound homeobox,factor
R3438 T5412 T5410 compound transcription,factor
R3439 T5413 T5410 acl expressed,factor
R3440 T5414 T5413 prep in,expressed
R3441 T5415 T5416 preconj both,rods
R3442 T5416 T5414 pobj rods,in
R3443 T5417 T5416 cc and,rods
R3444 T5418 T5416 conj cones,rods
R3445 T5419 T5408 cc and,is
R3446 T5420 T5421 auxpass is,required
R3447 T5421 T5408 conj required,is
R3448 T5422 T5421 prep for,required
R3449 T5423 T5424 det the,expression
R3450 T5424 T5422 pobj expression,for
R3451 T5425 T5424 prep of,expression
R3452 T5426 T5427 det a,variety
R3453 T5427 T5425 pobj variety,of
R3454 T5428 T5427 prep of,variety
R3455 T5429 T5430 npadvmod rod,specific
R3456 T5430 T5435 amod specific,genes
R3457 T5431 T5429 punct -,rod
R3458 T5432 T5429 cc and,rod
R3459 T5433 T5429 conj cone,rod
R3460 T5434 T5430 punct -,specific
R3461 T5435 T5428 pobj genes,of
R3462 T5436 T5437 punct [,25
R3463 T5437 T5421 parataxis 25,required
R3464 T5438 T5437 punct ],25
R3465 T5439 T5408 punct .,is
R3466 T5441 T5442 prep In,is
R3467 T5443 T5441 pobj contrast,In
R3468 T5444 T5443 prep to,contrast
R3469 T5445 T5446 dep what,seen
R3470 T5446 T5444 pcomp seen,to
R3471 T5447 T5446 auxpass is,seen
R3472 T5448 T5446 prep in,seen
R3473 T5449 T5450 det the,mutant
R3474 T5450 T5448 pobj mutant,in
R3475 T5451 T5450 compound Nrl,mutant
R3476 T5452 T5442 punct ", ",is
R3477 T5453 T5454 compound Nr2e3,expression
R3478 T5454 T5442 nsubj expression,is
R3479 T5455 T5442 acomp unchanged,is
R3480 T5456 T5442 prep in,is
R3481 T5457 T5458 compound Crx,homozygotes
R3482 T5458 T5456 pobj homozygotes,in
R3483 T5459 T5458 compound mutant,homozygotes
R3484 T5460 T5461 punct (,data
R3485 T5461 T5442 meta data,is
R3486 T5462 T5461 amod unpublished,data
R3487 T5463 T5461 punct ),data
R3488 T5464 T5442 punct .,is

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5208 20-33 CL:0000210 denotes photoreceptor
T5209 34-47 GO_EXT:transcription denotes transcription
T5210 34-55 GO_EXT:transcription_factor denotes transcription factors
T5211 67-73 SO_EXT:sequence_altered_entity denotes mutant
T5212 103-106 PR_EXT:000005904 denotes Crx
T5213 111-114 PR_EXT:000011432 denotes Nrl
T5214 137-143 SO_EXT:sequence_altered_entity denotes mutant
T5215 197-200 PR_EXT:000011432 denotes Nrl
T5216 206-209 CL:0000604 denotes rod
T5217 220-225 CHEBI_EXT:22695 denotes basic
T5218 226-233 CHEBI_SO_EXT:leucine denotes leucine
T5219 241-254 GO_EXT:transcription denotes transcription
T5220 241-261 GO_EXT:transcription_factor denotes transcription factor
T5221 298-301 CL:0000604 denotes rod
T5222 311-316 SO_EXT:0000704 denotes genes
T5223 344-348 CL:0000573 denotes cone
T5224 358-363 SO_EXT:0000704 denotes genes
T5225 367-371 CL:0000604 denotes rods
T5226 378-381 PR_EXT:000011432 denotes Nrl
T5227 397-408 SO_EXT:0000704 denotes genetically
T5228 421-426 PR_EXT:000011403 denotes Nr2e3
T5229 451-461 GO:0010467 denotes expression
T5230 468-471 PR_EXT:000005904 denotes Crx
T5231 486-499 GO_EXT:transcription denotes transcription
T5232 486-506 GO_EXT:transcription_factor denotes transcription factor
T5233 507-516 GO:0010467 denotes expressed
T5234 525-529 CL:0000604 denotes rods
T5235 534-539 CL:0000573 denotes cones
T5236 564-574 GO:0010467 denotes expression
T5237 591-594 CL:0000604 denotes rod
T5238 600-604 CL:0000573 denotes cone
T5239 614-619 SO_EXT:0000704 denotes genes
T5240 661-664 PR_EXT:000011432 denotes Nrl
T5241 665-671 SO_EXT:sequence_altered_entity denotes mutant
T5242 673-678 PR_EXT:000011403 denotes Nr2e3
T5243 679-689 GO:0010467 denotes expression
T5244 706-709 PR_EXT:000005904 denotes Crx
T5245 710-716 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5142 20-33 CL:0000210 denotes photoreceptor
T5143 103-106 PR:000005904 denotes Crx
T5144 111-114 PR:000011432 denotes Nrl
T5145 197-200 PR:000011432 denotes Nrl
T5146 206-209 CL:0000604 denotes rod
T5147 220-225 CHEBI:22695 denotes basic
T5148 298-301 CL:0000604 denotes rod
T5149 311-316 SO:0000704 denotes genes
T5150 344-348 CL:0000573 denotes cone
T5151 358-363 SO:0000704 denotes genes
T5152 367-371 CL:0000604 denotes rods
T5153 378-381 PR:000011432 denotes Nrl
T5154 397-408 SO:0000704 denotes genetically
T5155 421-426 PR:000011403 denotes Nr2e3
T5156 451-461 GO:0010467 denotes expression
T5157 468-471 PR:000005904 denotes Crx
T5158 507-516 GO:0010467 denotes expressed
T5159 525-529 CL:0000604 denotes rods
T5160 534-539 CL:0000573 denotes cones
T5161 564-574 GO:0010467 denotes expression
T5162 591-594 CL:0000604 denotes rod
T5163 600-604 CL:0000573 denotes cone
T5164 614-619 SO:0000704 denotes genes
T5165 661-664 PR:000011432 denotes Nrl
T5166 673-678 PR:000011403 denotes Nr2e3
T5167 679-689 GO:0010467 denotes expression
T5168 706-709 PR:000005904 denotes Crx

2_test

Id Subject Object Predicate Lexical cue
16110338-11694879-85798521 373-375 11694879 denotes 24
16110338-11694879-85798522 463-465 11694879 denotes 24
16110338-10581037-85798523 621-623 10581037 denotes 25
T85266 373-375 11694879 denotes 24
T4282 463-465 11694879 denotes 24
T41962 621-623 10581037 denotes 25